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Author Berry [303 articles]

Recent papers posted to CiteULike by the author Berry.
  • A Mathematical Analysis of the Effects of Hebbian Learning Rules on the Dynamics and Structure of Discrete-Time Random Recurrent Neural Networks.
    Neural computation (14 July 2008)
    by Benoît Siri, Hugues Berry, Bruno Cessac, Bruno Delord, Mathias Quoy
    posted to theory plasticity network by sen_cheng on 2008-07-25 17:20:15 as ***
  • On the nature of fur evolution: a phylogenetic approach in Actinobacteria
    BMC Evolutionary Biology, Vol. 8 (25 June 2008), 185.
    by Catarina L Santos, Joao Vieira, Fernando Tavares, David R Benson, Louis S Tisa, Alison M Berry, Pedro Moradas-Ferreira, Philippe Normand
    posted to no-tag by Retchless on 2008-07-24 21:14:58 as **
  • Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
    Cell, Vol. 133, No. 3. (2 May 2008), pp. 523-536.
    by Ryan Lister, Ronan C O'Malley, Julian Tonti-Filippini, Brian D Gregory, Charles C Berry, Harvey A Millar, Joseph R Ecker
    posted to methylation genome-organization genome arabidopsis by jmjimenez on 2008-07-24 16:31:05 as read along with 3 people GeeSharpMinor caseybrown megraw
  • The chemical abstract machine
    (1990), pp. 81-94.
    by Gerard Berry, Gerard Boudol
    posted to no-tag by mperalta on 2008-07-23 20:44:35 as ** along with 6 people pedagand bfraser erikgarrison scis0000001 mstone cogumbreiro
  • Dominance and environmental correlates of alien annual plants in the Mojave Desert, USA
    Journal of Arid Environments, Vol. 67, No. Supplement 1. (2006), pp. 100-124.
    by ML Brooks, KH Berry
    posted to mojave-desert invasive-species alien-plants by mrobles on 2008-07-22 18:49:53 as **
  • Direct observation of steps in rotation of the bacterial flagellar motor
    Nature, Vol. 437, No. 7060., pp. 916-919.
    by Yoshiyuki Sowa, Alexander D Rowe, Mark C Leake, Toshiharu Yakushi, Michio Homma, Akihiko Ishijima, Richard M Berry
    posted to stepping motor flagellar bacterial by gabe_rosser on 2008-07-21 11:13:06 as ** along with 2 people and 2 groups barry chrn structural_bioinformatics Bioinformatics
  • Stoichiometry and turnover in single, functioning membrane protein complexes
    Nature (13 September 2006)
    by Mark C Leake, Jennifer H Chandler, George H Wadhams, Fan Bai, Richard M Berry, Judith P Armitage
    posted to turnover motor flagellar bacterial by gabe_rosser on 2008-07-21 00:20:39 as read along with 2 people chrn balabu
  • Using Linear Algebra for Intelligent Information Retrieval
    No. UT-CS-94-270. (1994)
    by Michael W Berry, Susan T Dumais, Gavin W O'Brien
    posted to lsi ir by fer on 2008-07-17 18:22:27 as ** along with 12 people imrchen A_Olympia pdlug arsyed mthomure sugarexpletive harshrc sflinter sid137 ehohman george_g navil
  • The maximum number of torque-generating units in the flagellar motor of Escherichia coli is at least 11.
    Proc Natl Acad Sci U S A, Vol. 103, No. 21. (23 May 2006), pp. 8066-8071.
    by SW Reid, MC Leake, JH Chandler, CJ Lo, JP Armitage, RM Berry
    posted to stator motor motb mota flagellar bacterial by gabe_rosser on 2008-07-15 18:04:22 as ** along with 2 people chrn litam
  • HER2 and response to paclitaxel in node-positive breast cancer.
    The New England journal of medicine, Vol. 357, No. 15. (11 October 2007), pp. 1496-1506.
    by DF Hayes, AD Thor, LG Dressler, D Weaver, S Edgerton, D Cowan, G Broadwater, LJ Goldstein, S Martino, JN Ingle, IC Henderson, L Norton, EP Winer, CA Hudis, MJ Ellis, DA Berry,
    posted to cancer by djmonstermo on 2008-07-11 04:46:50 as **
  • Acute mild footshock alters ethanol drinking and plasma corticosterone levels in C57BL/6J male mice, but not DBA/2J or A/J male mice.
    Alcohol (Fayetteville, N.Y.) (1 July 2008)
    by Douglas B B Matthews, A Leslie L Morrow, Todd O'Buckley, Timothy J J Flanigan, Raymond B B Berry, Melloni N N Cook, Guy Mittleman, Dan Goldowitz, Sayaka Tokunaga, Janelle M M Silvers
    posted to no-tag by schmoutz on 2008-07-06 17:20:24 as **
  • The effect of asbestosis on lung cancer risk beyond the dose related effect of asbestos alone.
    Occupational and environmental medicine, Vol. 62, No. 12. (December 2005), pp. 885-889.
    by A Reid, N de Klerk, GL Ambrosini, N Olsen, SC Pang, G Berry, AW Musk
    posted to _pietro by azonaiss on 2008-07-04 10:23:42 as **
  • The other beetle-hunter
    Nature, Vol. 453, No. 7199. (25 June 2008), pp. 1188-1190.
    by Andrew Berry, Janet Browne
    posted to no-tag by gulsacan on 2008-06-30 20:14:41 as ****
  • Tomatoes, land and hearsay: Property and history in asante in the time of structural adjustment
    World Development, Vol. 25, No. 8. (August 1997), pp. 1225-1241.
    by Sara Berry
    posted to juliepaper by ddsalon on 2008-06-26 16:18:03 as **
  • Orientational Order in Block Copolymer Films Zone Annealed below the Order-Disorder Transition Temperature
    Nano Lett., Vol. 7, No. 9. (12 September 2007), pp. 2789-2794.
    by BC Berry, AW Bosse, JF Douglas, RL Jones, A Karim
    posted to bcp by dwinston on 2008-06-25 04:19:36 as ****
  • Cetuximab for the treatment of colorectal cancer.
    N Engl J Med, Vol. 357, No. 20. (15 November 2007), pp. 2040-2048.
    by DJ Jonker, CJ O'Callaghan, CS Karapetis, JR Zalcberg, D Tu, HJ Au, SR Berry, M Krahn, T Price, RJ Simes, NC Tebbutt, G van Hazel, R Wierzbicki, C Langer, MJ Moore
    posted to treatment rectal_cancer cetuximab by frohike on 2008-06-20 18:43:49 as ** along with 1 person jfr
  • Quantification of viable tumor microvascular characteristics by multispectral analysis
    Magnetic Resonance in Medicine, Vol. 9999, No. 9999. (2008), NA.
    by Leanne R Berry, Kai H Barck, Mary A Go, Jed Ross, Xiumin Wu, Simon P Williams, Alvin Gogineni, Mary J Cole, Nicholas Van Bruggen, Germaine Fuh, Frank Peale, Napoleone Ferrara, Sarajane Ross, Ralph H Schwall, Richard AD Carano
    posted to t2 mri dw-mri dce-mri angiogenesis by xtizon on 2008-06-19 07:34:43 as *****
  • Algorithms and applications for approximate nonnegative matrix factorization
    Computational Statistics & Data Analysis, Vol. 52, No. 1. (15 September 2007), pp. 155-173.
    by Michael W Berry, Murray Browne, Amy N Langville, Paul V Pauca, Robert J Plemmons
    posted to rss georss clustering algorithm by ianturton on 2008-06-18 16:27:31 as **
  • Lucas: A System for Modeling Land-Use Change
    IEEE Comput. Sci. Eng., Vol. 3, No. 1. (March 1996), pp. 24-35.
    by Michael W Berry, Brett C Hazen, Rhonda L Macintyre, Richard O Flamm
    posted to no-tag by skosta on 2008-06-17 21:56:08 as **
  • Optical lattices with PT symmetry are not transparent
    Journal of Physics A: Mathematical and Theoretical, Vol. 41, No. 24. (2008), 244007.
    by MV Berry
    posted to pt-symmetry pt_applications by RMT on 2008-06-15 08:28:30 as *****
  • Rapid tracheal intubation with rocuronium: a probability approach to determining dose.
    Anesthesiology, Vol. 91, No. 1. (July 1999), pp. 131-136.
    by H Kirkegaard-Nielsen, JE Caldwell, PD Berry
    posted to no-tag by p_waghs on 2008-06-13 18:04:21 as **
  • Implicit and explicit knowledge bases in artificial grammar learning.
    Journal of experimental psychology. Learning, memory, and cognition, Vol. 17, No. 5. (September 1991), pp. 875-887.
    by Z Dienes, D Broadbent, D Berry
    posted to ag by jamalex on 2008-06-08 10:23:02 as **
  • Statistical methods in epidemiology: a comparison of statistical methods to analyze dose-response and trend analysis in epidemiologic studies.
    Journal of clinical epidemiology, Vol. 51, No. 12. (December 1998), pp. 1223-1233.
    by KM Boucher, ML Slattery, TD Berry, C Quesenberry, K Anderson
    posted to changepoint by jyuh on 2008-06-06 16:11:32 as **
  • Potential effects of climate change on plant communities in three montane nature reserves in Scotland, UK
    Biological Conservation, Vol. In Press, Corrected Proof
    by Mandar R Trivedi, Michael D Morecroft, Pamela M Berry, Terence P Dawson
    posted to urban ecology by dekay23 to the group Urban Ecology on 2008-06-04 02:11:20 as read
  • Engineering novel metalloproteins: design of metal-binding sites into native protein scaffolds.
    Chemical reviews, Vol. 101, No. 10. (October 2001), pp. 3047-3080.
    by Y Lu, SM Berry, TD Pfister
    posted to protein-design enzyme biometal by robert on 2008-06-02 16:38:34 as **
  • The Nature and Determinants of Customer Expectations of Service
    Journal of the Academy of Marketing Science, Vol. 21, No. 1. (1 January 1993), pp. 1-12.
    by Valarie A Zeithaml, Leonard L Berry, A Parasuraman
    posted to no-tag by network01 on 2008-05-30 21:33:57 as * along with 2 people GrasyNY b4mkuutt
  • Calculating the bound spectrum by path summation in action-angle variables
    Journal of Physics A: Mathematical and General, Vol. 10, No. 3. (1977), pp. 371-379.
    by MV Berry, M Tabor
    posted to quantum_chaos by RMT on 2008-05-28 12:23:29 as **
  • Optimization of Deep-Etched, Single-Mode GaAs/AlGaAs Optical Waveguides Using Controlled Leakage into the Substrate
    J. Lightwave Technol., Vol. 17, No. 2. (1 February 1999), 267.
    by John M Heaton, Michelle M Bourke, Sylvia B Jones, Brian H Smith, Keith P Hilton, Gilbert W Smith, Jeremy C Birbeck, Graham Berry, Susan V Dewar, David R Wight
    posted to waveguide gaas design algaas by dmt195 on 2008-05-28 09:45:05 as *****
  • Gene expression profiling of human prostate cancer stem cells reveals a pro-inflammatory phenotype and the importance of extracellular matrix interactions
    Genome Biology, Vol. 9 (20 May 2008), R83.
    by Richard Birnie, Steven D Bryce, Claire Roome, Vincent Dussupt, Alastair Droop, Shona H Lang, Paul A Berry, Catherine F Hyde, John L Lewis, Michael J Stower, Norman J Maitland, Anne T Collins
    posted to ecm disease cancer by grahamc on 2008-05-28 02:26:19 as **
  • The RNA silencing endonuclease Argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster.
    Genes & development, Vol. 20, No. 21. (1 November 2006), pp. 2985-2995.
    by RP van Rij, MC Saleh, B Berry, C Foo, A Houk, C Antoniewski, R Andino
    posted to rnai drosophila antiviral by shuzhens on 2008-05-27 22:30:32 as **
  • Overcoming the Curse of Dimensionality in Clustering by Means of the Wavelet Transform
    The Computer Journal, Vol. 43, No. 2. (???? 2000), pp. 107-120.
    by Fionn Murtagh, Jean L Starck, Michael W Berry
    posted to no-tag by burtonwu on 2008-05-27 06:16:04 as ** along with 2 people atbrew jiong
  • Comparing ANNs and Genetic Programming for Voice Quality Assessment Post-Treatment
    Applied Artificial Intelligence, Vol. 22, No. 3. (2008), pp. 198-207.
    by Tim Ritchings, Carl Berry, Walaa Sheta
    posted to two-class dfunctions by sventura to the group Classification with Genetic Programming on 2008-05-24 13:34:07 as read
  • Environmental Modulation of Protein Cation-π Interactions
    J. Am. Chem. Soc., Vol. 129, No. 17. (2 May 2007), pp. 5308-5309.
    by BW Berry, MM Elvekrog, C Tommos
    posted to tryptophan cation-pi by loison on 2008-05-20 09:41:36 as **
  • The use of exhaled nitric oxide to guide asthma management: a randomized controlled trial.
    American journal of respiratory and critical care medicine, Vol. 176, No. 3. (1 August 2007), pp. 231-237.
    by DE Shaw, MA Berry, M Thomas, RH Green, CE Brightling, AJ Wardlaw, ID Pavord
    posted to no asthma by Amazoness on 2008-05-19 08:52:10 as **
  • Concentration and purification by magnetic separation of the erythrocytic stages of all human Plasmodium species
    Malaria Journal, Vol. 7 (05 March 2008), 45.
    by Clotilde Ribaut, Antoine Berry, Severine Chevalley, Karine Reybier, Isabelle Morlais, Daniel Parzy, Francoise Nepveu, Fancoise Benoit-Vical, Alexis Valentin
    posted to parasite-production by becarmson on 2008-05-18 08:46:45 as **
  • Initial sequencing and comparative analysis of the mouse genome.
    Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562.
    by RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, R Agarwala, R Ainscough, M Alexandersson, P An, SE Antonarakis, J Attwood, R Baertsch, J Bailey, K Barlow, S Beck, E Berry, B Birren, T Bloom, P Bork, M Botcherby, N Bray, MR Brent, DG Brown, SD Brown, C Bult, J Burton, J Butler, RD Campbell, P Carninci, S Cawley, F Chiaromonte, AT Chinwalla, DM Church, M Clamp, C Clee, FS Collins, LL Cook, RR Copley, A Coulson, O Couronne, J Cuff, V Curwen, T Cutts, M Daly, R David, J Davies, KD Delehaunty, J Deri, ET Dermitzakis, C Dewey, NJ Dickens, M Diekhans, S Dodge, I Dubchak, DM Dunn, SR Eddy, L Elnitski, RD Emes, P Eswara, E Eyras, A Felsenfeld, GA Fewell, P Flicek, K Foley, WN Frankel, LA Fulton, RS Fulton, TS Furey, D Gage, RA Gibbs, G Glusman, S Gnerre, N Goldman, L Goodstadt, D Grafham, TA Graves, ED Green, S Gregory, R Guigó, M Guyer, RC Hardison, D Haussler, Y Hayashizaki, LW Hillier, A Hinrichs, W Hlavina, T Holzer, F Hsu, A Hua, T Hubbard, A Hunt, I Jackson, DB Jaffe, LS Johnson, M Jones, TA Jones, A Joy, M Kamal, EK Karlsson, D Karolchik, A Kasprzyk, J Kawai, E Keibler, C Kells, WJ Kent, A Kirby, DL Kolbe, I Korf, RS Kucherlapati, EJ Kulbokas, D Kulp, T Landers, JP Leger, S Leonard, I Letunic, R Levine, J Li, M Li, C Lloyd, S Lucas, B Ma, DR Maglott, ER Mardis, L Matthews, E Mauceli, JH Mayer, M McCarthy, WR McCombie, S McLaren, K McLay, JD McPherson, J Meldrim, B Meredith, JP Mesirov, W Miller, TL Miner, E Mongin, KT Montgomery, M Morgan, R Mott, JC Mullikin, DM Muzny, WE Nash, JO Nelson, MN Nhan, R Nicol, Z Ning, C Nusbaum, MJ O'Connor, Y Okazaki, K Oliver, E Overton-Larty, L Pachter, G Parra, KH Pepin, J Peterson, P Pevzner, R Plumb, CS Pohl, A Poliakov, TC Ponce, CP Ponting, S Potter, M Quail, A Reymond, BA Roe, KM Roskin, EM Rubin, AG Rust, R Santos, V Sapojnikov, B Schultz, J Schultz, MS Schwartz, S Schwartz, C Scott, S Seaman, S Searle, T Sharpe, A Sheridan, R Shownkeen, S Sims, JB Singer, G Slater, A Smit, DR Smith, B Spencer, A Stabenau, N Stange-Thomann, C Sugnet, M Suyama, G Tesler, J Thompson, D Torrents, E Trevaskis, J Tromp, C Ucla, A Ureta-Vidal, JP Vinson, AC Von Niederhausern, CM Wade, M Wall, RJ Weber, RB Weiss, MC Wendl, AP West, K Wetterstrand, R Wheeler, S Whelan, J Wierzbowski, D Willey, S Williams, RK Wilson, E Winter, KC Worley, D Wyman, S Yang, SP Yang, EM Zdobnov, MC Zody, ES Lander,
    posted to test by OriginalLurch on 2008-05-16 17:16:19 as ** along with 17 people and 2 groups dkulp sdinka Cortel jwortman Dax42 aprasad ccots indigoviolet adepace treangen joshuashen djkt stajich olympos hausen yoanjacquemin elfar EisenLab Berkeley Mycology
  • An information theoretic approach to the functional classification of neurons
    ArXiv Physics e-prints (December 2002)
    by E Schneidman, W Bialek, Berry
    posted to neuroscience neurons journal-club info-theory by i-stevenson to the group Kording Lab on 2008-05-09 17:48:57 as read
  • Prediction of mesothelioma and lung cancer in a cohort of asbestos exposed workers.
    European journal of epidemiology (26 April 2008)
    by Antonio Gasparrini, Anna M Pizzo, Giuseppe Gorini, Adele Seniori Costantini, Stefano Silvestri, Cesare Ciapini, Andrea Innocenti, Geoffrey Berry
    posted to elaborato_generale by azonaiss on 2008-05-09 09:33:02 as *****
  • Neural networks for molecular sequence classification.
    Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 1 (1993), pp. 429-437.
    by C Wu, M Berry, YS Fung, J McLarty
    posted to sequence neural_networks molecular classification by soramame_0518 on 2008-05-08 15:04:58 as **
  • Quantitative fluorescence resonance energy transfer measurements using fluorescence microscopy.
    Biophys J, Vol. 74, No. 5. (May 1998), pp. 2702-2713.
    by GW Gordon, G Berry, XH Liang, B Levine, B Herman
    posted to measurements live fret cells by nahnah on 2008-05-07 21:58:18 as ** along with 3 people and 1 group pgastrein dark_innocent Fritz neurolit
  • Elastic and Anelastic Behavior of Ion-Implanted Silicon
    Applied Physics Letters, Vol. 20, No. 2. (1972), pp. 88-90.
    by SI Tan, BS Berry, BL Crowder
    posted to apl by rice on 2008-05-06 16:43:08 as **
  • Bayesian Multiple Comparisons Using Dirichlet Process Priors
    Journal of the American Statistical Association, Vol. 93, No. 443. (1998), pp. 1130-1139.
    by Ramanan Gopalan, Donald A Berry
    posted to dirichletprior by abbie_riner on 2008-05-06 14:01:45 as **
  • Discovery of a Novel and Potent Class of FabI-Directed Antibacterial Agents
    Antimicrob. Agents Chemother., Vol. 46, No. 10. (1 October 2002), pp. 3118-3124.
    by David J Payne, William H Miller, Valerie Berry, John Brosky, Walter J Burgess, Emile Chen, Walter E Dewolf, Andrew P Fosberry, Rebecca Greenwood, Martha S Head, Dirk A Heerding, Cheryl A Janson, Deborah D Jaworski, Paul M Keller, Peter J Manley, Terrance D Moore, Kenneth A Newlander, Stewart Pearson, Brian J Polizzi, Xiayang Qiu, Stephen F Rittenhouse, Courtney Slater-Radosti, Kevin L Salyers, Mark A Seefeld, Martin G Smyth, Dennis T Takata, Irene N Uzinskas, Kalindi Vaidya, Nicola G Wallis, Scott B Winram, Catherine C Yuan, William F Huffman
    posted to antibiotics by GX on 2008-05-05 03:21:21 as **
  • Torque Generated by the Flagellar Motor of Escherichia coli while Driven Backward
    Biophys. J., Vol. 76, No. 1. (1 January 1999), pp. 580-587.
    by Richard M Berry, Howard C Berg
    posted to bacteria_flagella_project by kdesmond on 2008-05-04 22:32:32 as **
  • Torque and switching in the bacterial flagellar motor. An electrostatic model.
    Biophys. J., Vol. 64, No. 4. (1 April 1993), pp. 961-973.
    by RM Berry
    posted to biophysics bacteria_flagella_project by kdesmond on 2008-05-02 19:16:08 as **
  • Torque generated by the bacterial flagellar motor close to stall.
    Biophys J, Vol. 71, No. 6. (December 1996), pp. 3501-3510.
    by RM Berry, HC Berg
    posted to biophysics bacteria_flagella_project by kdesmond on 2008-05-02 19:13:15 as ** along with 1 person chrn
  • Torque-speed relationship of the bacterial flagellar motor.
    Proc Natl Acad Sci U S A, Vol. 103, No. 5. (31 January 2006), pp. 1260-1265.
    by J Xing, F Bai, R Berry, G Oster
    posted to bacteria_flagella_project by kdesmond on 2008-05-02 19:12:00 as ** along with 1 person chrn
  • Hadamard NMR spectroscopy for relaxation measurements of large (>35 kDa) proteins
    Journal of Biomolecular NMR, Vol. 39, No. 3. (16 November 2007), pp. 239-245.
    by B Burnley, Arnout Kalverda, Stephen Paisey, Alan Berry, Steve Homans
    posted to relaxation nmr-processing by rph on 2008-05-01 01:20:10 as **
  • Data Mining Techniques: For Marketing, Sales, and Customer Support
    (1997)
    by Michael J Berry, Gordon Linoff
    posted to data_mining by gr650 on 2008-04-28 15:22:50 as read
  • Chloroquine treatment of severe malaria in children. Pharmacokinetics, toxicity, and new dosage recommendations.
    The New England journal of medicine, Vol. 319, No. 23. (8 December 1988), pp. 1493-1500.
    by NJ White, KD Miller, FC Churchill, C Berry, J Brown, SB Williams, BM Greenwood
    posted to no-tag by cchand on 2008-04-25 20:00:45 as **
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