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Author Lauffenburger [53 articles]

Recent papers posted to CiteULike by the author Lauffenburger.
  • Multivariate proteomic analysis of murine embryonic stem cell self-renewal versus differentiation signaling
    Proceedings of the National Academy of Sciences, Vol. 101, No. 9. (2 March 2004), pp. 2900-2905.
    by Wendy Prudhomme, George Q Daley, Peter Zandstra, Douglas A Lauffenburger
    posted to proteome integration by inesdesantiago on 2008-07-24 16:26:30 as ***** along with 1 person faisalm
  • Modeling of signal-response cascades using decision tree analysis
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2027-2035.
    by Sampsa Hautaniemi, Sourabh Kharait, Akihiro Iwabu, Alan Wells, Douglas A Lauffenburger
    posted to systems biology bioe594 by kallberg on 2008-06-17 20:43:44 as **
  • Cell adhesion and motility depend on nanoscale RGD clustering.
    Journal of cell science, Vol. 113 ( Pt 10) (May 2000), pp. 1677-1686.
    by G Maheshwari, G Brown, DA Lauffenburger, A Wells, LG Griffith
    posted to origami-use origami by dna on 2008-05-09 15:24:42 as **
  • Quantitative Analysis of Pathways Controlling Extrinsic Apoptosis in Single Cells
    Molecular Cell, Vol. 30, No. 1. (11 April 2008), pp. 11-25.
    by John G Albeck, John M Burke, Bree B Aldridge, Mingsheng Zhang, Douglas A Lauffenburger, Peter K Sorger
    posted to signaling quantitation proteomics modeling apoptosis by brianb on 2008-05-08 19:09:55 as ** along with 1 person burkey
  • Physicochemical modelling of cell signalling pathways
    Nature Cell Biology, Vol. 8, No. 11., pp. 1195-1203.
    by Bree B Aldridge, John M Burke, Douglas A Lauffenburger, Peter K Sorger
    posted to systems_biology nature_sysbio_08 by shikin to the group GeneGo on 2008-05-04 12:29:26 as *** along with 5 people and 4 groups mattjb mhucka jaycopeland cdppublications burkey ComplexAdaptiveSystems DSTO-CAS SorgerLab CDP
  • Collecting and organizing systematic sets of protein data
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11., pp. 803-812.
    by John G Albeck, Gavin Macbeath, Forest M White, Peter K Sorger, Douglas A Lauffenburger, Suzanne Gaudet
    posted to systems_biology nature_sysbio_08 by shikin to the group GeneGo on 2008-05-04 12:28:47 as *** along with 5 people and 2 groups balajis massivemayhem jaycopeland cdppublications cdpwebadmin SorgerLab CDP
  • Interleukin-7 receptor signaling network: an integrated systems perspective.
    Cellular & molecular immunology, Vol. 5, No. 2. (April 2008), pp. 79-89.
    by MJ Palmer, VS Mahajan, LC Trajman, DJ Irvine, DA Lauffenburger, JZ Chen
    posted to signaling network mapping by brianb on 2008-05-02 02:53:36 as ***
  • Ligand/receptor signaling threshold (LIST) model accounts for gp130-mediated embryonic stem cell self-renewal responses to LIF and HIL-6.
    Stem cells (Dayton, Ohio), Vol. 20, No. 2. (2002), pp. 119-138.
    by S Viswanathan, T Benatar, S Rose-John, DA Lauffenburger, PW Zandstra
    posted to leukemia_inhibitory_factor by MllePapillon on 2008-04-28 16:24:39 as **
  • MULTI-PATHWAY MODEL ENABLES PREDICTION OF KINASE INHIBITOR CROSS-TALK EFFECTS ON MIGRATION OF HER2-OVEREXPRESSING MAMMARY EPITHELIAL CELLS
    Mol Pharmacol (18 March 2008), mol.107.043794.
    by Neil Kumar, Raffi Afeyan, Hyung-Do Kim, Douglas A Lauffenburger
    posted to quantitation proteomics modeling by brianb on 2008-04-28 01:39:33 as **
  • Quantitative studies of bacterial chemotaxis and microbial population dynamics
    Microbial Ecology, Vol. 22, No. 1. (5 December 1991), pp. 175-185.
    by Douglas Lauffenburger
    posted to bacterial chemotaxis competition ecology population by vladimirov on 2008-04-16 13:50:46 as read
  • Effect of bacterial chemotaxis on dynamics of microbial competition
    Microbial Ecology, Vol. 16, No. 2. (1988), pp. 115-131.
    by Francis X Kelly, Karen J Dapsis, Douglas A Lauffenburger
    posted to chemotaxis competition microbial population by vladimirov on 2008-04-16 13:47:42 as read
  • Flexible Informatics for Linking Experimental Data to Mathemati-cal Models via DataRail.
    Bioinformatics (24 January 2008)
    by Julio Saez-Rodriguez, Arthur Goldsipe, Jeremy Muhlich, Leonidas G G Alexopoulos, Bjorn Millard, Douglas A A Lauffenburger, Peter K K Sorger
    posted to bioinformatics modeling by GeeSharpMinor on 2008-03-18 00:03:28 as ** along with 2 people jyuh cdppublications
  • Control of self-assembling oligopeptide matrix formation through systematic variation of amino acid sequence
    Biomaterials, Vol. 23, No. 1. (January 2002), pp. 219-227.
    by Michael R Caplan, Elissa M Schwartzfarb, Shuguang Zhang, Roger D Kamm, Douglas A Lauffenburger
    posted to positively references by kirinli on 2008-02-28 21:52:32 as **
  • Simulation of integrin-cytoskeletal interactions in migrating fibroblasts.
    Biophys J, Vol. 67, No. 1. (July 1994), pp. 461-474.
    by CE Schmidt, T Chen, DA Lauffenburger
    posted to migration by soojin on 2008-02-16 23:27:38 as **
  • Cell Migration: A Physically Integrated Molecular Process
    Cell, Vol. 84, No. 3. (9 February 1996), pp. 359-369.
    by Douglas A Lauffenburger, Alan F Horwitz
    posted to migration by soojin on 2008-02-15 03:38:23 as **
  • Modeling HER2 Effects on Cell Behavior from Mass Spectrometry Phosphotyrosine Data.
    PLoS Comput Biol, Vol. 3, No. 1. (5 January 2007)
    by Neil Kumar, Alejandro Wolf-Yadlin, Forest M M White, Douglas A A Lauffenburger
    posted to pls by cdpwebadmin on 2008-01-31 18:45:01 as ** along with 2 people jfr pjasper
  • A biological approach to computational models of proteomic networks
    Current Opinion in Chemical Biology, Vol. In Press, Corrected Proof
    by Kevin A Janes, Douglas A Lauffenburger
    posted to pls by cdpwebadmin on 2008-01-31 18:43:17 as ** along with 6 people and 2 groups Borelli Ayest eweaver julius ponsfrilus cdppublications SysbioMPI-TCells CDP
  • A Systems Model of Signaling Identifies a Molecular Basis Set for Cytokine-Induced Apoptosis
    Science, Vol. 310, No. 5754. (9 December 2005), pp. 1646-1653.
    by Kevin A Janes, John G Albeck, Suzanne Gaudet, Peter K Sorger, Douglas A Lauffenburger, Michael B Yaffe
    posted to pls by cdpwebadmin on 2008-01-31 18:38:12 as ** along with 5 people and 3 groups tmmurali julius j3xucite jaycopeland cdppublications SysbioMPI-TCells SorgerLab CDP
  • Cue-Signal-Response Analysis of TNF-Induced Apoptosis by Partial Least Squares Regression of Dynamic Multivariate Data
    Journal of Computational Biology, Vol. 11, No. 4. (2004), pp. 544-561.
    by Kevin A Janes, Jason R Kelly, Suzanne Gaudet, John G Albeck, Peter K Sorger, Douglas A Lauffenburger
    posted to pls by cdpwebadmin on 2008-01-31 18:37:21 as **
  • A compendium of signals and responses triggered by prodeath and prosurvival cytokines.
    Mol Cell Proteomics, Vol. 4, No. 10. (October 2005), pp. 1569-1590.
    by S Gaudet, KA Janes, JG Albeck, EA Pace, DA Lauffenburger, PK Sorger
    posted to pls by cdpwebadmin on 2008-01-31 18:33:25 as ** along with 2 people and 2 groups jaycopeland cdppublications SorgerLab CDP
  • Common effector processing mediates cell-specific responses to stimuli
    Nature (18 July 2007)
    by Kathryn Miller-Jensen, Kevin A Janes, Joan S Brugge, Douglas A Lauffenburger
    posted to biology differentiation system by dvaidpz on 2008-01-08 11:27:37 as read along with 2 people and 1 group jyuh cdppublications CDP
  • Bayesian analysis of signaling networks governing embryonic stem cell fate decisions
    Bioinformatics, Vol. 21, No. 6. (15 March 2005), pp. 741-753.
    by J Woolf, Prudhomme Wendy, Daheron Laurence, Q Daley, A Lauffenburger
    posted to bayesian_networks network_inference signaling_nw by roys on 2007-11-06 04:15:30 as ** along with 1 person rmk
  • Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 523-529.
    by Karen Sachs, Omar Perez, Dana Pe'er, Douglas A Lauffenburger, Garry P Nolan
    posted to ml networks by lp2 on 2007-10-19 16:48:54 as ** along with 12 people and 1 group kentsis kaarsinogen balajis rand_bayes ryang wnpx os252 j3xucite noano koller jhatrimatri cdppublications CDP
  • Direct Lyapunov exponent analysis enables parametric study of transient signalling governing cell behaviour
    Systems Biology, IEE Proceedings, Vol. 153, No. 6. (2006), pp. 425-432.
    by BB Aldridge, G Haller, PK Sorger, DA Lauffenburger
    posted to gene_regulatory_networks by mattjb to the group DSTO-CAS on 2007-10-18 07:26:36 as read along with 1 group ComplexAdaptiveSystems
  • Leukemia inhibitory factor (LIF) concentration modulates embryonic stem cell self-renewal and differentiation independently of proliferation
    Biotechnology and Bioengineering, Vol. 69, No. 6. (2000), pp. 607-617.
    by PW Zandstra, HV Le, GQ Daley, LG Griffith, DA Lauffenburger
    posted to self-renewal stem-cells by faisalm on 2007-10-01 04:33:14 as **
  • Supplementation-dependent differences in the rates of embryonic stem cell self-renewal, differentiation, and apoptosis
    Biotechnology and Bioengineering, Vol. 84, No. 5. (2003), pp. 505-517.
    by Sowmya Viswanathan, Tania Benatar, Maria Mileikovsky, Douglas A Lauffenburger, Andras Nagy, Peter W Zandstra
    posted to cell-signalling self-renewal stem-cells by faisalm on 2007-09-28 02:33:29 as ***
  • Autocrine loops with positive feedback enable context-dependent cell signaling.
    Am J Physiol Cell Physiol, Vol. 282, No. 3. (March 2002)
    by SY Shvartsman, MP Hagan, A Yacoub, P Dent, HS Wiley, DA Lauffenburger
    posted to no-tag by jyuh on 2007-09-22 08:45:03 as ** along with 1 person and 4 groups jwdietrich MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks.
    Proc Natl Acad Sci U S A (26 March 2007)
    by Alejandro Wolf-Yadlin, Sampsa Hautaniemi, Douglas A A Lauffenburger, Forest M M White
    posted to no-tag by jyuh on 2007-08-14 03:24:27 as ** along with 1 person and 1 group cdppublications CDP
  • Calpain-2 as a target for limiting prostate cancer invasion.
    Cancer Res, Vol. 63, No. 15. (1 August 2003), pp. 4632-4640.
    by A Mamoune, JH Luo, DA Lauffenburger, A Wells
    posted to invasion matrigel by CCampbell00 on 2007-07-29 22:16:42 as **
  • Epi-allelic Erk1 and Erk2 knockdown series for quantitative analysis of T cell Erk regulation and IL-2 production
    Molecular Immunology, Vol. 44, No. 12. (May 2007), pp. 3085-3091.
    by Lucia Wille, Melissa L Kemp, Peter Sandy, Christina L Lewis, Douglas A Lauffenburger
    posted to cdp_center by cdppublications on 2007-06-11 21:34:57 as ** along with 1 group CDP
  • Bayesian network approach to cell signaling pathway modeling.
    Sci STKE, Vol. 2002, No. 148. (3 September 2002)
    by K Sachs, D Gifford, T Jaakkola, P Sorger, DA Lauffenburger
    posted to bayesian network_inference by dragonrez on 2007-05-18 01:56:50 as ** along with 2 people wnpx noano
  • Effects of HER2 overexpression on cell signaling networks governing proliferation and migration
    Mol Syst Biol, Vol. 2 (3 October 2006)
    by Alejandro Wolf-Yadlin, Neil Kumar, Yi Zhang, Sampsa Hautaniemi, Muhammad Zaman, Hyung-Do Kim, Viara Grantcharova, Douglas A Lauffenburger, Forest M White
    posted to erbb2 migration signaling by pjasper on 2007-04-25 20:32:43 as ** along with 3 people and 1 group jfr balabu cdppublications CDP
  • Building with a scaffold: emerging strategies for high- to low-level cellular modeling
    Trends in Biotechnology, Vol. 21, No. 6. (June 2003), pp. 255-262.
    by T Ideker, D Lauffenburger
    posted to cassman-workshop by mhucka on 2007-04-18 04:50:13 as ** along with 2 people and 2 groups wnpx roland_ewald dIEMoSIRIS MoSi-Rostock
  • Bioengineering and Systems Biology
    Annals of Biomedical Engineering, Vol. 34, No. 2. (February 2006), pp. 257-264.
    by Trey Ideker, L Winslow, A Lauffenburger
    posted to sysbio toread by wnpx on 2007-04-07 11:08:46 as ** along with 1 person and 1 group cdppublications CDP
  • Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules.
    Mol Cell Proteomics, Vol. 4, No. 9. (September 2005), pp. 1240-1250.
    by Y Zhang, A Wolf-Yadlin, PL Ross, DJ Pappin, J Rush, DA Lauffenburger, FM White
    posted to cdp_center egfr mass_spectrometry by cdppublications on 2007-04-04 17:05:36 as ** along with 1 group CDP
  • A multiplexed homogeneous fluorescence-based assay for protein kinase activity in cell lysates
    Nature Methods, Vol. 2, No. 4. (23 March 2005), pp. 277-284.
    by Melissa D Shults, Kevin A Janes, Douglas A Lauffenburger, Barbara Imperiali
    posted to cdp_center kinase by cdppublications on 2007-04-04 15:57:16 as ** along with 1 group CDP
  • Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A, Vol. 101, No. 52. (28 December 2004), pp. 18006-18011.
    by MR Said, TJ Begley, AV Oppenheim, DA Lauffenburger, LD Samson
    posted to cdp_center cell_signalling proteomic_networks yeast by cdppublications on 2007-04-04 15:28:42 as ** along with 1 person and 1 group opheliav CDP
  • Adenoviral vector saturates Akt pro-survival signaling and blocks insulin-mediated rescue of tumor necrosis-factor-induced apoptosis.
    J Cell Sci, Vol. 119, No. Pt 18. (15 September 2006), pp. 3788-3798.
    by K Miller-Jensen, KA Janes, YL Wong, LG Griffith, DA Lauffenburger
    posted to apoptosis cdp_center tumor_necrosis_factor by cdppublications on 2007-04-04 15:26:40 as ** along with 1 group CDP
  • Quantitative Network Signal Combinations Downstream of TCR Activation Can Predict IL-2 Production Response.
    J Immunol, Vol. 178, No. 8. (15 April 2007), pp. 4984-4992.
    by ML Kemp, L Wille, CL Lewis, LB Nicholson, DA Lauffenburger
    posted to cdp_center cell_signalling by cdppublications on 2007-04-04 15:03:55 as ** along with 1 group CDP
  • Integrated mechanistic and data-driven modelling for multivariate analysis of signalling pathways.
    J R Soc Interface, Vol. 3, No. 9. (22 August 2006), pp. 515-526.
    by F Hua, S Hautaniemi, R Yokoo, DA Lauffenburger
    posted to cdp_center cell_signalling modelling by cdppublications on 2007-04-04 14:55:38 as ** along with 1 group CDP
  • Effects of Bcl-2 levels on Fas signaling-induced caspase-3 activation: molecular genetic tests of computational model predictions.
    J Immunol, Vol. 175, No. 2. (15 July 2005), pp. 985-995.
    by F Hua, MG Cornejo, MH Cardone, CL Stokes, DA Lauffenburger
    posted to apoptosis cdp_center modelling by cdppublications on 2007-04-04 14:48:59 as ** along with 1 group CDP
  • A high-throughput quantitative multiplex kinase assay for monitoring information flow in signaling networks: application to sepsis-apoptosis.
    Mol Cell Proteomics, Vol. 2, No. 7. (July 2003), pp. 463-473.
    by KA Janes, JG Albeck, LX Peng, PK Sorger, DA Lauffenburger, MB Yaffe
    posted to apoptosis cdp_center kinase sepsis signalling_networks by cdppublications on 2007-04-03 15:53:15 as ** along with 1 person and 2 groups jaycopeland SorgerLab CDP
  • Cue-signal-response analysis of TNF-induced apoptosis by partial least squares regression of dynamic multivariate data.
    J Comput Biol, Vol. 11, No. 4. (2004), pp. 544-561.
    by KA Janes, JR Kelly, S Gaudet, JG Albeck, PK Sorger, DA Lauffenburger
    posted to apoptosis cdp_center tumor_necrosis_factor by cdppublications on 2007-04-03 15:52:09 as ** along with 1 person and 2 groups jaycopeland SorgerLab CDP
  • Direct Lyapunov exponent analysis enables parametric study of transient signalling governing cell behaviour.
    Syst Biol (Stevenage), Vol. 153, No. 6. (November 2006), pp. 425-432.
    by BB Aldridge, G Haller, PK Sorger, DA Lauffenburger
    posted to cdp_center cell_signalling by cdppublications on 2007-04-03 15:43:39 as ** along with 1 person and 2 groups jmuhlich SorgerLab CDP
  • The response of human epithelial cells to TNF involves an inducible autocrine cascade.
    Cell, Vol. 124, No. 6. (24 March 2006), pp. 1225-1239.
    by KA Janes, S Gaudet, JG Albeck, UB Nielsen, DA Lauffenburger, PK Sorger
    posted to cdp_center systems_biology tumor_necrosis_factor by cdppublications on 2007-04-03 15:27:27 as ** along with 3 people and 3 groups julius dailybiomed jaycopeland SysbioMPI-TCells SorgerLab CDP
  • Migration of individual microvessel endothelial cells: stochastic model and parameter measurement
    J Cell Sci, Vol. 99, No. 2. (1 June 1991), pp. 419-430.
    by Cl Stokes, Da Lauffenburger, Sk Williams
    posted to motility by ksk on 2007-02-13 09:38:03 as ** along with 1 group ikeg-lab
  • Spatial range of autocrine signaling: modeling and computational analysis.
    Biophys J, Vol. 81, No. 4. (October 2001), pp. 1854-1867.
    by SY Shvartsman, HS Wiley, WM Deen, DA Lauffenburger
    posted to biomedical-cybernetics cybernetics by jwdietrich on 2006-09-26 18:59:56 as ** along with 1 person and 4 groups jstajic MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Cell signaling pathways as control modules: Complexity for simplicity?
    PNAS, Vol. 97, No. 10. (9 May 2000), pp. 5031-5033.
    by Douglas A Lauffenburger
    posted to cell discretisation intro simulation by livingthingdan on 2006-09-21 02:11:27 as ** along with 1 group livingthing
  • Microfluidic shear devices for quantitative analysis of cell adhesion.
    Anal Chem, Vol. 76, No. 18. (15 September 2004), pp. 5257-5264.
    by H Lu, LY Koo, WM Wang, DA Lauffenburger, LG Griffith, KF Jensen
    posted to adhesion cell chip microfluidic pdms shear by tsjipko on 2006-08-30 15:54:42 as ***
  • Computational modeling of the EGF-receptor system: a paradigm for systems biology
    Trends in Cell Biology, Vol. 13, No. 1. (January 2003), pp. 43-50.
    by Steven, Stanislav Y Shvartsman, Douglas A Lauffenburger
    posted to biology system by j3xucite on 2006-05-07 02:33:44 as **
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