Group: biomedical-nlp - with tag comps [63 articles] Export

Recent papers posted by members of the biomedical-nlp group with tag comps

	Using information theory to search for co-evolving residues in proteins. [My Copy] Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4116-4124. by L. C. Martin, G. B. Gloor, S. D. Dunn, L. M. Wahl posted to major-proposal information-theory comps compensatory coevolution bioi7712 by caporaso to the group biomedical-nlp on 2006-11-30 19:02:02 as along with 5 people zambujo bioinfo rabio rsantana cjeans
	FlyBase: anatomical data, images and queries [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_1. (1 January 2006), pp. D484-488. by Gary Grumbling, Victor Strelets, The FlyBase Consortium posted to comps database genomics major-proposal by caporaso to the group biomedical-nlp on 2006-11-28 23:20:33 as along with 3 people tienholin juanitogarcia cmor
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted to compare comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-11-13 20:28:08 as along with 30 people and 4 groups tomatoe45 rneches gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet Md_2007 sebk wallacei knaseanka chrn jwm balajis gbart sriram_s cdallett sanchezbuelna timflutre gisle urgi Ema LabDros References for 3DSim paper Radiation_Damage Stressosome
	Residue coevolution: Modeling and interpretation [My Copy] (August 2006) by Zhengyuan Wang posted to coevolution compensatory comps major-proposal by caporaso to the group biomedical-nlp on 2006-11-11 00:44:42 as
	Sarcomeric Proteins and Familial Hypertrophic Cardiomyopathy: Linking Mutations in Structural Proteins to Complex Cardiovascular Phenotypes [My Copy] Heart Failure Reviews, Vol. 10, No. 3. (September 2005), pp. 237-248. by Jil Tardiff posted to comps major-proposal myosin by caporaso to the group biomedical-nlp on 2006-11-11 00:39:35 as
	Comparing genomes in terms of protein structure: surveys of a finite parts list. [My Copy] FEMS Microbiol Rev, Vol. 22, No. 4. (October 1998), pp. 277-304. by M. Gerstein, H. Hegyi posted to comps evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-23 01:40:45 as
	Global mapping of pharmacological space [My Copy] Nature Biotechnology, Vol. 24, No. 7. (13 July 2006), pp. 805-815. by Gaia V. Paolini, Richard H. B. Shapland, Willem P. van Hoorn, Jonathan S. Mason, Andrew L. Hopkins posted to comps drug-design minor-proposal by caporaso to the group biomedical-nlp on 2006-09-22 21:13:18 as along with 12 people bertelsen sameersoi superpyrin richardbickerton ramensky Yanno BragilMassoud guhjy kuhn bicko allmensch jerome_ucsf_slb
	Studying Genomes Through the Aeons: Protein Families, Pseudogenes and Proteome Evolution [My Copy] Journal of Molecular Biology, Vol. 318, No. 5. (17 May 2002), pp. 1155-1174. by Paul M. Harrison, Mark Gerstein posted to comps evolution major-proposal protein structural-biology by caporaso to the group biomedical-nlp on 2006-09-22 16:55:21 as
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted to alignment comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-09-19 18:06:21 as along with 34 people biomcgary vprieto tomjad oceanwind Blackbeard db344 udivi daforerog Md_2007 sebk cen4ik usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk ahanora Haggan BioNica timflutre adijr xingxu newton1234 Lombardo_7
	Multiple sequence alignment [My Copy] Current Opinion in Structural Biology In Nucleic acids/Sequences and topology - Anna Marie Pyle and Jonathan Widom/Nick V Grishin and Sarah A Teichmann, Vol. 16, No. 3. (June 2006), pp. 368-373. by R. Edgar, S. Batzoglou posted to alignment comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-09-19 18:03:29 as along with 10 people natstreet carlk treangen druvus CharlesM rabio cjeans mingzhi edvin nklee
	Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements [My Copy] Nucl. Acids Res., Vol. 29, No. 14. (15 July 2001), pp. 2994-3005. by Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, et al.Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, Stephen F. Altschul posted to alignment comps major-proposal sequence by caporaso to the group biomedical-nlp on 2006-09-19 18:01:22 as
	Structural determinants of allosteric ligand activation in RXR heterodimers. [My Copy] Cell, Vol. 116, No. 3. (6 February 2004), pp. 417-429. by A. I. Shulman, C. Larson, D. J. Mangelsdorf, R. Ranganathan posted to comps evolution protein by caporaso to the group biomedical-nlp on 2006-09-14 22:35:47 as along with 3 people and 2 groups lna marcius gbart BioinfoCIPF SGU-CIPF
	Allosteric determinants in guanine nucleotide-binding proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450. by M. E. Hatley, S. W. Lockless, S. K. Gibson, A. G. Gilman, R. Ranganathan posted to comps evolution major-proposal by caporaso to the group biomedical-nlp on 2006-09-14 22:34:07 as along with 5 people and 4 groups qluo barry lna Einat marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties. [My Copy] Journal of molecular biology, Vol. 315, No. 4. (25 January 2002), pp. 771-786. by Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz posted to comps function major-proposal by caporaso to the group biomedical-nlp on 2006-09-14 01:23:57 as along with 1 person and 3 groups marcius References for 3DSim paper BioinfoCIPF SGU-CIPF
	PMUT: a web-based tool for the annotation of pathological mutations on proteins. [My Copy] Bioinformatics (Oxford, England) , Vol. 21, No. 14. (15 July 2005), pp. 3176-3178. by C. Ferrer-Costa, J. L. Gelpí, L. Zamakola, I. Parraga, X. de la Cruz, M. Orozco posted to bioinformatics comps function major-proposal mutation by caporaso to the group biomedical-nlp on 2006-09-13 23:26:08 as along with 2 people daforerog guhjy
	Deleterious mutation prediction in the secondary structure of RNAs [My Copy] Nucl. Acids Res., Vol. 31, No. 22. (15 November 2003), pp. 6578-6584. by Danny Barash posted to comps function major-proposal rna structure by caporaso to the group biomedical-nlp on 2006-09-13 18:50:36 as
	Prediction of deleterious human alleles. [My Copy] Hum Mol Genet, Vol. 10, No. 6. (15 March 2001), pp. 591-597. by S. Sunyaev, V. Ramensky, I. Koch, W. Lathe, A. S. Kondrashov, P. Bork posted to comps function major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-13 01:56:16 as along with 4 people and 1 group massivemayhem cat_worth lpfernandes adijr structural_bioinformatics
	Predicting the Effects of Amino Acid Substitutions on Protein Function. [My Copy] Annu Rev Genomics Hum Genet (9 August 2005) by Pauline C C. Ng, Steven Henikoff posted to comps function major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-13 01:54:39 as along with 7 people and 1 group daforerog Einat hdopazo ramensky massivemayhem cat_worth lpfernandes structural_bioinformatics
	Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation. [My Copy] J Mol Biol, Vol. 307, No. 2. (23 March 2001), pp. 683-706. by D. Chasman, R. M. Adams posted to comps function major-proposal by caporaso to the group biomedical-nlp on 2006-09-13 01:53:59 as along with 2 people chrn chad_davis
	The impact of structural genomics on the protein data bank. [My Copy] Am J Pharmacogenomics, Vol. 4, No. 4. (2004), pp. 247-252. by H. M. Berman, J. D. Westbrook posted to comps major-proposal pdb structural-genomics-consortium by caporaso to the group biomedical-nlp on 2006-09-13 01:53:19 as
	SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non synonymous SNPs. [My Copy] Bioinformatics (29 June 2006) by Joke Reumers, Sebastian Maurer-Stroh, Joost Schymkowitz, Frederic Rousseau posted to bioinformatics comps function major-proposal mutation structural-biology by caporaso to the group biomedical-nlp on 2006-09-13 00:24:23 as along with 4 people and 2 groups chad_davis massivemayhem cat_worth skoddet structural_bioinformatics Nielsen group
	The challenge of documenting mutation across the genome: the human genome variation society approach. [My Copy] Hum Mutat, Vol. 23, No. 5. (May 2004), pp. 447-452. by O. Horaitis, R. G. Cotton posted to comps database major-proposal mutation by caporaso to the group biomedical-nlp on 2006-09-12 18:01:19 as along with 1 person snuppepuppan
	Protein structure database search and evolutionary classification. [My Copy] Nucleic Acids Res, Vol. 34, No. 13. (2006), pp. 3646-3659. by J. M. Yang, C. H. Tung posted to alignment comps evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-11 03:26:03 as along with 1 person and 1 group waffle168 mgh-lcs
	Integration of structural and functional genomics [My Copy] Animal Genetics, Vol. 37, No. s1. (2006), pp. 1-6. by C. K. Tuggle, J. C. M. Dekkers, J. M. Reecy posted to comps major-proposal by caporaso to the group biomedical-nlp on 2006-09-11 03:24:58 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	The developing art of protein crystallisation: new advances from improved knowledge automation and miniaturisation. [My Copy] Prog Biophys Mol Biol, Vol. 88, No. 3. (July 2005), pp. 283-284. by T. L. Blundell posted to comps major-proposal structural-biology by caporaso to the group biomedical-nlp on 2006-09-11 03:23:52 as
	Application of NMR screening in drug discovery. [My Copy] Curr Top Med Chem, Vol. 3, No. 1. (2003), pp. 81-97. by J. Fejzo, C. Lepre, X. Xie posted to comps drug-design druggability minor-proposal screening by caporaso to the group biomedical-nlp on 2006-09-10 23:32:54 as along with 1 person and 2 groups sangeetha Bioinformatics insilicodrug
	NMR-based screening in drug discovery. [My Copy] Q Rev Biophys, Vol. 32, No. 3. (August 1999), pp. 211-240. by P. J. Hajduk, R. P. Meadows, S. W. Fesik posted to comps drug-design druggability minor-proposal screening by caporaso to the group biomedical-nlp on 2006-09-10 23:29:36 as
	Discovering High-Affinity Ligands for Proteins: SAR by NMR [My Copy] Science, Vol. 274, No. 5292. (29 November 1996), pp. 1531-1534. by Suzanne B. Shuker, Philip J. Hajduk, Robert P. Meadows, Stephen W. Fesik posted to comps drug-design druggability minor-proposal screening by caporaso to the group biomedical-nlp on 2006-09-10 23:19:55 as along with 6 people ubcg08l mkrishna dgruiz apaydin cjeans viktor21614
	Latest developments in crystallography and structure-based design of protein kinase inhibitors as drug candidates. [My Copy] Curr Opin Pharmacol, Vol. 2, No. 5. (October 2002), pp. 567-573. by D. H. Williams, T. Mitchell posted to comps drug-design druggability minor-proposal by caporaso to the group biomedical-nlp on 2006-09-10 23:02:27 as
	Target analysis: a priori assessment of druggability. [My Copy] Ernst Schering Res Found Workshop, No. 42. (2003), pp. 11-17. by A. L. Hopkins, C. R. Groom posted to comps drug-design druggability minor-proposal protein by caporaso to the group biomedical-nlp on 2006-09-10 23:01:05 as along with 1 person bicko
	From target identification to drug screening assays for neurodegenerative diseases. [My Copy] Pharmacol Res, Vol. 52, No. 3. (September 2005), pp. 245-251. by C. Zuccato, M. Tartari, D. Goffredo, E. Cattaneo, D. Rigamonti posted to comps druggability minor-proposal screening by caporaso to the group biomedical-nlp on 2006-09-10 22:57:26 as
	Druggability: selecting optimized drug candidates. [My Copy] Drug Discov Today, Vol. 10, No. 23-24. (December 2005), pp. 1577-1579. by Y. Sugiyama posted to comps drug-design druggability minor-proposal by caporaso to the group biomedical-nlp on 2006-09-10 22:51:58 as
	Progress and problems in the exploration of therapeutic targets. [My Copy] Drug Discov Today, Vol. 11, No. 9-10. (May 2006), pp. 412-420. by C. Zheng, L. Han, C. W. Yap, B. Xie, Y. Chen posted to comps drug-design druggability minor-proposal by caporaso to the group biomedical-nlp on 2006-09-10 22:45:10 as
	Modern biomedical research: an internally self-consistent universe with little contact with medical reality? [My Copy] Nature Reviews Drug Discovery, Vol. 2, No. 2. (01 February 2003), pp. 151-154. by David F. Horrobin posted to comps drug-design druggability minor-proposal by caporaso to the group biomedical-nlp on 2006-09-10 21:47:48 as along with 2 people diod massivemayhem
	Chemoinformatics - predicting the physicochemical properties of 'drug-like' molecules. [My Copy] Curr Opin Biotechnol, Vol. 11, No. 1. (February 2000), pp. 104-107. by J. F. Blake posted to comps data-mining drug-design druggability minor-proposal screening by caporaso to the group biomedical-nlp on 2006-09-10 19:24:26 as
	Binding MOAD (Mother Of All Databases). [My Copy] Proteins (21 June 2005) by Liegi Hu, Mark L L. Benson, Richard D D. Smith, Michael G G. Lerner, Heather A A. Carlson posted to comps data-mining database drug-design major-proposal pdb protein structural-biology by caporaso to the group biomedical-nlp on 2006-09-10 02:38:19 as along with 5 people and 9 groups BragilMassoud sangeetha shantanu papatonyhill higueruelo structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology insilicodrug
	A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses. [My Copy] Genetics, Vol. 173, No. 1. (1 May 2006), pp. 9-23. by M. A. Fares, S. A. Travers posted to compensatory comps evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-08 19:24:36 as along with 9 people and 2 groups chica biomcgary qluo marti stevanspringer operon breden cjeans tale FAB-lab SFUAntibodyResearch
	Anti-SARS drug screening by molecular docking. [My Copy] Amino Acids, Vol. 31, No. 1. (July 2006), pp. 73-80. by D. Q. Wei, R. Zhang, Q. S. Du, et al.W. N. Gao, Y. Li, H. Gao, S. Q. Wang, X. Zhang, A. X. Li, S. Sirois, K. C. Chou posted to comps drug-design druggability minor-proposal screening by caporaso to the group biomedical-nlp on 2006-09-07 16:21:44 as
	A cell-based ultra-high-throughput screening assay for identifying inhibitors of D-amino acid oxidase. [My Copy] J Biomol Screen, Vol. 11, No. 5. (August 2006), pp. 481-487. by P. E. Brandish, C. S. Chiu, J. Schneeweis, et al.N. J. Brandon, C. L. Leech, O. Kornienko, E. M. Scolnick, B. Strulovici, W. Zheng posted to comps drug-design druggability high-throughput minor-proposal protein screening by caporaso to the group biomedical-nlp on 2006-09-07 16:17:41 as
	Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information. [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2185-2190. by L. Bao, Y. Cui posted to comps data-mining function major-proposal mutation structural-biology by caporaso to the group biomedical-nlp on 2006-09-06 23:23:15 as along with 4 people and 1 group chrn bicko massivemayhem cat_worth structural_bioinformatics
	Lead- and drug-like compounds: the rule-of-five revolution [My Copy] Drug Discovery Today: Technologies, Vol. 1, No. 4. (December 2004), pp. 337-341. by Christopher A. Lipinski posted to comps drug-design druggability minor-proposal by caporaso to the group biomedical-nlp on 2006-09-05 23:29:09 as along with 5 people sameersoi lindsayBattle massivemayhem noby LamBras
	Druggability Indices for Protein Targets Derived from NMR-Based Screening Data [My Copy] Journal of Medicinal Chemistry, Vol. 48, No. 7. (1 April 2005), pp. 2518-2525. by Philip J. Hajduk, Jeffrey R. Huth, Stephen W. Fesik posted to comps drug-design druggability minor-proposal screening structural-biology by caporaso to the group biomedical-nlp on 2006-09-05 20:45:11 as along with 3 people ubcg08l kshameer higueruelo
	Discovery of a potent inhibitor of the antiapoptotic protein Bcl-xL from NMR and parallel synthesis. [My Copy] J Med Chem, Vol. 49, No. 2. (26 January 2006), pp. 656-663. by A. M. Petros, J. Dinges, D. J. Augeri, et al.S. A. Baumeister, D. A. Betebenner, M. G. Bures, S. W. Elmore, P. J. Hajduk, M. K. Joseph, S. K. Landis, D. G. Nettesheim, S. H. Rosenberg, W. Shen, S. Thomas, X. Wang, I. Zanze, H. Zhang, S. W. Fesik posted to comps drug-design druggability minor-proposal screening structural-biology by caporaso to the group biomedical-nlp on 2006-09-05 20:42:01 as
	From fold predictions to function predictions: automation of functional site conservation analysis for functional genome predictions. [My Copy] Protein Sci, Vol. 8, No. 5. (May 1999), pp. 1104-1115. by B. Zhang, L. Rychlewski, K. Pawłowski, J. S. Fetrow, J. Skolnick, A. Godzik posted to comps database major-proposal minor-proposal structural-biology by caporaso to the group biomedical-nlp on 2006-09-04 20:10:34 as along with 1 person sriram_s
	Statistically rigorous automated protein annotation. [My Copy] Bioinformatics, Vol. 20, No. 7. (1 May 2004), pp. 1066-1073. by W. G. Krebs, P. E. Bourne posted to compare comps function major-proposal mutation protein structural-biology by caporaso to the group biomedical-nlp on 2006-09-02 01:26:20 as
	Statistical and visual morph movie analysis of crystallographic mutant selection bias in protein mutation resource data. [My Copy] J Bioinform Comput Biol, Vol. 2, No. 1. (March 2004), pp. 61-75. by W. G. Krebs, P. E. Bourne posted to compare comps data-mining major-proposal mutation protein structural-biology by caporaso to the group biomedical-nlp on 2006-09-02 01:24:29 as
	Statistical and visual morph movie analysis of crystallographic mutant selection bias in protein mutation resource data. [My Copy] Proc IEEE Comput Soc Bioinform Conf, Vol. 2 (2003), pp. 180-189. by W. G. Krebs, P. E. Bourne posted to compare comps data-mining major-proposal mutation pdb protein structural-biology by caporaso to the group biomedical-nlp on 2006-09-02 01:18:57 as
	MutaProt: a web interface for structural analysis of point mutations. [My Copy] Bioinformatics, Vol. 17, No. 4. (April 2001), pp. 381-382. by E. Eyal, R. Najmanovich, V. Sobolev, M. Edelman posted to compare comps high-throughput major-proposal mutation pdb protein structural-biology by caporaso to the group biomedical-nlp on 2006-09-01 23:43:00 as
	Clustering of highly homologous sequences to reduce the size of large protein databases. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 3. (1 March 2001), pp. 282-283. by W. Li, L. Jaroszewski, A. Godzik posted to clustering comps major-proposal protein sequence by caporaso to the group biomedical-nlp on 2006-09-01 22:00:52 as along with 4 people maria_hauser TLVincent yylin Cortel
	MSDsite: A database search and retrieval system for the analysis and viewing of bound ligands and active sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 58, No. 1. (2005), pp. 190-199. by Adel Golovin, Dimitris Dimitropoulos, Tom Oldfield, Abdelkrim Rachedi, Kim Henrick posted to comps database drug-design minor-proposal pdb protein by caporaso to the group biomedical-nlp on 2006-09-01 21:17:05 as along with 2 people nickolay massivemayhem

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all	57
file-import-09-04-28	56
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nlp	4
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priming	4
privacy	4
similarity	4

Group: biomedical-nlp - with tag comps [63 articles] Export

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