Group: biomedical-nlp - with tag evolution [40 articles] Export

Recent papers posted by members of the biomedical-nlp group with tag evolution

	God: The Failed Hypothesis. How Science Shows That God Does Not Exist [My Copy] (25 January 2007) by Victor J. Stenger posted to evolution by caporaso to the group biomedical-nlp on 2007-03-08 21:17:56 as along with 1 person ultrascichick
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted to compare comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-11-13 20:28:08 as along with 29 people and 4 groups rneches gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet Md_2007 sebk wallacei knaseanka chrn jwm balajis gbart sriram_s cdallett sanchezbuelna timflutre gisle urgi Ema LabDros References for 3DSim paper Radiation_Damage Stressosome
	Why are some human disease-associated mutations fixed in mice? [My Copy] Trends Genet, Vol. 19, No. 12. (December 2003), pp. 678-681. by L. Gao, J. Zhang posted to compensatory evolution major-proposal mutation by caporaso to the group biomedical-nlp on 2006-11-07 17:29:36 as along with 1 person bpcusack
	Correlated mutations contain information about protein-protein interaction [My Copy] J Mol Biol, Vol. 271, No. 4. (Aug 1997), pp. 511-523. by F. Pazos, Helmer M. Citterich, G. Ausiello, A. Valencia posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Coevolving protein residues: maximum likelihood identification and relationship to structure [My Copy] J Mol Biol, Vol. 287, No. 1. (Mar 1999), pp. 187-198. by D. D. Pollock, W. R. Taylor, N. Goldman posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 7. (Mar 2000), pp. 3288-3291. by K. R. Wollenberg, W. R. Atchley posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Exploring a phylogenetic approach for the detection of correlated substitutions in proteins [My Copy] Mol Biol Evol, Vol. 17, No. 11. (Nov 2000), pp. 1753-1759. by P. Tuff, P. Darlu posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Correlated mutation analyses on very large sequence families [My Copy] Chembiochem, Vol. 3, No. 10. (Oct 2002), pp. 1010-1017. by L. Oliveira, A. C. Paiva, G. Vriend posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments [My Copy] Bioinformatics, Vol. 19, No. 6. (Apr 2003), pp. 750-755. by E. R. Tillier, T. W. Lui posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Using multiple sequence correlation analysis to characterize functionally important protein regions [My Copy] Protein Eng, Vol. 16, No. 6. (Jun 2003), pp. 397-406. by M. C. Saraf, G. L. Moore, C. D. Maranas posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Evaluating the predictability of conformational switching in RNA [My Copy] Bioinformatics, Vol. 20, No. 10. (Jul 2004), pp. 1573-1582. by B. Voss, C. Meyer, R. Giegerich posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	On evolutionary conservation of thermodynamic coupling in proteins [My Copy] J Biol Chem, Vol. 279, No. 18. (Apr 2004), pp. 19046-19050. by A. A. Fodor, R. W. Aldrich posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Influence of conservation on calculations of amino acid covariance in multiple sequence alignments [My Copy] Proteins, Vol. 56, No. 2. (Aug 2004), pp. 211-221. by A. A. Fodor, R. W. Aldrich posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:48 as
	Dobzhansky-Muller incompatibilities in protein evolution. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 23. (12 November 2002), pp. 14878-14883. by A. S. Kondrashov, S. Sunyaev, F. A. Kondrashov posted to compensatory evolution major-proposal mutation protein by caporaso to the group biomedical-nlp on 2006-10-02 20:48:25 as along with 6 people and 1 group betainverse LeightonP mdimmic ccots cmm ramensky FAB-lab
	Enzymes with extra talents: moonlighting functions and catalytic promiscuity. [My Copy] Curr Opin Chem Biol, Vol. 7, No. 2. (April 2003), pp. 265-272. by S. D. Copley posted to evolution function major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-30 01:36:51 as along with 3 people tomhebbron pauldobson i41m
	Compensated deleterious mutations in insect genomes. [My Copy] Science, Vol. 306, No. 5701. (26 November 2004), pp. 1553-1554. by R. J. Kulathinal, B. R. Bettencourt, D. L. Hartl posted to mutation major-proposal evolution compensatory bioi7712 by caporaso to the group biomedical-nlp on 2006-09-28 23:57:10 as along with 2 people LeightonP bpcusack
	Comparing genomes in terms of protein structure: surveys of a finite parts list. [My Copy] FEMS Microbiol Rev, Vol. 22, No. 4. (October 1998), pp. 277-304. by M. Gerstein, H. Hegyi posted to comps evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-23 01:40:45 as
	Studying Genomes Through the Aeons: Protein Families, Pseudogenes and Proteome Evolution [My Copy] Journal of Molecular Biology, Vol. 318, No. 5. (17 May 2002), pp. 1155-1174. by Paul M. Harrison, Mark Gerstein posted to comps evolution major-proposal protein structural-biology by caporaso to the group biomedical-nlp on 2006-09-22 16:55:21 as
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to compensatory evolution major-proposal protein sca structural-biology by caporaso to the group biomedical-nlp on 2006-09-20 00:43:16 as along with 20 people and 2 groups mgomes qluo arjun_citeulike RebeccaHamer ynaito lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront choonpeng efge carlescorbi mingzhi yalexeev weisblum ca3295 BioinfoCIPF SGU-CIPF
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted to alignment comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-09-19 18:06:21 as along with 34 people biomcgary vprieto tomjad oceanwind Blackbeard db344 udivi daforerog Md_2007 sebk cen4ik usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk ahanora Haggan BioNica timflutre adijr xingxu newton1234 Lombardo_7
	Multiple sequence alignment [My Copy] Current Opinion in Structural Biology In Nucleic acids/Sequences and topology - Anna Marie Pyle and Jonathan Widom/Nick V Grishin and Sarah A Teichmann, Vol. 16, No. 3. (June 2006), pp. 368-373. by Robert C. Edgar, Serafim Batzoglou posted to alignment comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-09-19 18:03:29 as along with 10 people natstreet carlk treangen druvus CharlesM rabio cjeans mingzhi edvin nklee
	Structural determinants of allosteric ligand activation in RXR heterodimers. [My Copy] Cell, Vol. 116, No. 3. (6 February 2004), pp. 417-429. by A. I. Shulman, C. Larson, D. J. Mangelsdorf, R. Ranganathan posted to comps evolution protein by caporaso to the group biomedical-nlp on 2006-09-14 22:35:47 as along with 3 people and 2 groups lna marcius gbart BioinfoCIPF SGU-CIPF
	Allosteric determinants in guanine nucleotide-binding proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450. by M. E. Hatley, S. W. Lockless, S. K. Gibson, A. G. Gilman, R. Ranganathan posted to comps evolution major-proposal by caporaso to the group biomedical-nlp on 2006-09-14 22:34:07 as along with 5 people and 4 groups qluo barry lna Einat marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted to alignment evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-14 22:33:00 as along with 17 people and 5 groups mgomes qluo stevanspringer Einat marcius eckart_bindewald analogAI dgront sriram_s choonpeng Haggan rabio mottonen zambujo mingzhi bethbromley ca3295 Marcotte_Lab structural_bioinformatics FAB-lab BioinfoCIPF SGU-CIPF
	Protein structure database search and evolutionary classification. [My Copy] Nucleic Acids Res, Vol. 34, No. 13. (2006), pp. 3646-3659. by J. M. Yang, C. H. Tung posted to alignment comps evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-11 03:26:03 as along with 1 person and 1 group waffle168 mgh-lcs
	The exchangeability of amino acids in proteins. [My Copy] Genetics, Vol. 170, No. 4. (August 2005), pp. 1459-1472. by L. Y. Yampolsky, A. Stoltzfus posted to evolution protein by caporaso to the group biomedical-nlp on 2006-09-10 01:57:02 as along with 2 people julianm gwenknight
	A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses. [My Copy] Genetics, Vol. 173, No. 1. (1 May 2006), pp. 9-23. by M. A. Fares, S. A. Travers posted to compensatory comps evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-08 19:24:36 as along with 9 people and 2 groups chica biomcgary qluo marti stevanspringer operon breden cjeans tale FAB-lab SFUAntibodyResearch
	Mandelate racemase and muconate lactonizing enzyme are mechanistically distinct and structurally homologous. [My Copy] Nature, Vol. 347, No. 6294. (18 October 1990), pp. 692-694. by D. J. Neidhart, G. L. Kenyon, J. A. Gerlt, G. A. Petsko posted to comps evolution major-proposal protein structural-biology by caporaso to the group biomedical-nlp on 2006-08-31 00:43:56 as
	Evolution of an enzyme active site: the structure of a new crystal form of muconate lactonizing enzyme compared with mandelate racemase and enolase. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 18. (1 September 1998), pp. 10396-10401. by M. S. Hasson, I. Schlichting, J. Moulai, et al.K. Taylor, W. Barrett, G. L. Kenyon, P. C. Babbitt, J. A. Gerlt, G. A. Petsko, D. Ringe posted to comps evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-08-31 00:42:01 as
	Analytical Evolutionary Model for Protein Fold Occurrence in Genomes, Accounting for the Effects of Gene Duplication, Deletion, Acquisition and Selective Pressure [My Copy] In Power Laws, Scale-Free Networks and Genome Biology (2006), pp. 165-193. by Michael Kamal, Nicholas M. Luscombe, Jiang Qian, Mark Gerstein edited by E. V. Koonin, Y. I. Wolf, G. P. Karev posted to comps evolution fold-space major-proposal protein structural-biology by caporaso to the group biomedical-nlp on 2006-08-23 23:41:17 as
	Protein folds and families: sequence and structure alignments. [My Copy] Nucleic Acids Res, Vol. 27, No. 1. (1 January 1999), pp. 244-247. by L. Holm, C. Sander posted to comps evolution fold-space major-proposal protein by caporaso to the group biomedical-nlp on 2006-08-23 22:46:55 as
	Why Darwin Matters: The Case Against Intelligent Design [My Copy] (08 August 2006) by Michael Shermer posted to evolution by caporaso to the group biomedical-nlp on 2006-07-31 16:33:14 as
	Emergence: The Connected Lives of Ants, Brains, Cities, and Software [My Copy] (27 August 2002) by Steven Johnson posted to ai evolution machine-learning by caporaso to the group biomedical-nlp on 2006-07-06 18:35:04 as along with 20 people and 14 groups A_Olympia cosmizer pacianca3 sjc draggin rickl carlblesius jolilius wcrosbie elainelally seawidget bigbossman spirit_of_numenor achiar marcela grisogono PaulBHartzog JimFolk ganden ckhyde logics of knowledge Blog_and_Wiki_Research mgh-lcs TUCS-ES_Lab hst-bmi Wikipedia CoP_CMS ETEC533 CMS ComplexAdaptiveSystems VirtualPatient DSTO-CAS CSU_School_of_Education Web2-0_Education
	The Singularity Is Near : When Humans Transcend Biology [My Copy] (22 September 2005) by Ray Kurzweil posted to ai evolution by caporaso to the group biomedical-nlp on 2006-06-24 04:55:01 as
	I Am a Strange Loop [My Copy] (31 July 2006) by Douglas R. Hofstadter posted to ai evolution math by caporaso to the group biomedical-nlp on 2006-03-29 02:30:52 as along with 2 people dayjm mthomure
	Metamagical Themas: Questing for the Essence of Mind and Pattern [My Copy] (14 May 1996) by Douglas R. Hofstadter posted to ai evolution information-theory math by caporaso to the group biomedical-nlp on 2006-03-29 02:29:46 as along with 3 people robertoalamino mthomure paulclinger
	Gödel, Escher, Bach: An Eternal Golden Braid [My Copy] (01 January 1999) by Douglas R. Hofstadter posted to ai evolution math by caporaso to the group biomedical-nlp on 2006-03-29 02:29:06 as along with 22 people and 3 groups chihchun_chen michaelbanks robotact Aubrey trm005 Adso asekerci byronf dayjm pchiusano tystl paulclinger spirit_of_numenor joshuashen fawxtin grisogono germoglio volkansevim spinaltap526 dlobo edvin NitinCR ComplexAdaptiveSystems DSTO-CAS GEB
	Information Theory and Evolution [My Copy] by John Avery posted to evolution information-theory by caporaso to the group biomedical-nlp on 2006-03-28 16:17:41 as along with 4 people eldan cmmorel balicea daveh
	Error Minimization and Coding Triplet/Binding Site Associations Are Independent Features of the Canonical Genetic Code. [My Copy] J Mol Evol (Oct 2005) by Gregory J. Caporaso, Michael Yarus, Rob Knight posted to evolution genetic-code knight-lab yarus-lab by caporaso to the group biomedical-nlp on 2006-03-25 16:40:13 as
	Origins of the genetic code: the escaped triplet theory. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 179-198. by Michael Yarus, Gregory J. Caporaso, Rob Knight posted to evolution genetic-code knight-lab yarus-lab by caporaso to the group biomedical-nlp on 2006-03-25 16:37:52 as

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review	630
selection	613
phylogenetics	572
genome	532
read	530
genetics	470
protein	456
genomics	427
biology	413
network	409
development	402
cooperation	389
phylogeny	380
mutation	337
model	329
language	327
human	324
structure	309
bacteria	295
bioinformatics	292
gene	275
transposon	266
drosophila	249
ecology	249
expression	249
networks	224
software	219
theory	190
cognition	188
adaptation	184
rna	179
complexity	178
elegans	167
celegans	166
c_elegans	164
nematode	164
caenorhabditis_elegans	162
wormbase	162
duplication	160
yeast	155
master	154
transcription	148
article	147
cancer	147
immune	146
simulation	144
dna	139
culture	137
enzyme	136
regulation	136
epigenetics	135
molecular	134
mirna	131
microrna	130
statistics	130
sequence	129
social	129
evolutionary-genomics	127
genetic	119
population	119
epidemiology	118
modeling	116
evolvability	115
behavior	113
proteins	111
primates	108
alignment	107
recombination	107
sex	107
virus	106
altruism	104
gene-expression	104
dynamics	103
domain	101
disease	100
metabolism	97
language_evolution	96
immunology	95
speciation	94
conservation	92
psychology	92
variation	92
diversity	91
intron	91
mind	91
galaxies	86
history	85
game	84
indel	84
modularity	84
plant	84
coevolution	82
fungi	82
genes	82
interaction	81
modelling	81
algorithm	80
methods	80
reduction	78
comparative_genomics	77

Group: biomedical-nlp - with tag evolution [40 articles] Export

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