Group: biomedical-nlp - with tag major-proposal [81 articles] Export

Recent papers posted by members of the biomedical-nlp group with tag major-proposal

	Using information theory to search for co-evolving residues in proteins. [My Copy] Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4116-4124. by L. C. Martin, G. B. Gloor, S. D. Dunn, L. M. Wahl posted to major-proposal information-theory comps compensatory coevolution bioi7712 by caporaso to the group biomedical-nlp on 2006-11-30 19:02:02 as along with 5 people zambujo bioinfo rabio rsantana cjeans
	FlyBase: anatomical data, images and queries [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_1. (1 January 2006), pp. D484-488. by Gary Grumbling, Victor Strelets, The FlyBase Consortium posted to comps database genomics major-proposal by caporaso to the group biomedical-nlp on 2006-11-28 23:20:33 as along with 3 people tienholin juanitogarcia cmor
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted to compare comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-11-13 20:28:08 as along with 30 people and 4 groups tomatoe45 rneches gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet Md_2007 sebk wallacei knaseanka chrn jwm balajis gbart sriram_s cdallett sanchezbuelna timflutre gisle urgi Ema LabDros References for 3DSim paper Radiation_Damage Stressosome
	Residue coevolution: Modeling and interpretation [My Copy] (August 2006) by Zhengyuan Wang posted to coevolution compensatory comps major-proposal by caporaso to the group biomedical-nlp on 2006-11-11 00:44:42 as
	Sarcomeric Proteins and Familial Hypertrophic Cardiomyopathy: Linking Mutations in Structural Proteins to Complex Cardiovascular Phenotypes [My Copy] Heart Failure Reviews, Vol. 10, No. 3. (September 2005), pp. 237-248. by Jil Tardiff posted to comps major-proposal myosin by caporaso to the group biomedical-nlp on 2006-11-11 00:39:35 as
	Context dependence and coevolution among amino acid residues in proteins. [My Copy] Methods Enzymol, Vol. 395 (2005), pp. 779-790. by Z. O. Wang, D. D. Pollock posted to coevolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-11-08 15:08:49 as
	Effectiveness of correlation analysis in identifying protein residues undergoing correlated evolution [My Copy] Protein Eng., Vol. 10, No. 6. (1 June 1997), pp. 647-657. by D. D. Pollock, W. R. Taylor posted to coevolution compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-11-08 01:01:53 as along with 2 people janani137 friendpine
	Why are some human disease-associated mutations fixed in mice? [My Copy] Trends Genet, Vol. 19, No. 12. (December 2003), pp. 678-681. by L. Gao, J. Zhang posted to compensatory evolution major-proposal mutation by caporaso to the group biomedical-nlp on 2006-11-07 17:29:36 as along with 1 person bpcusack
	The Role of Compensatory Mutations in the Emergence of Drug Resistance. [My Copy] PLoS Comput Biol, Vol. 2, No. 10. (13 October 2006) by Andreas Handel, Roland R R. Regoes, Rustom Antia posted to compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-10-29 22:56:02 as along with 1 person ramensky
	Characterization of Compensated Mutations in Terms of Structural and Physico-Chemical Properties. [My Copy] J Mol Biol (26 September 2006) by Carles Ferrer-Costa, Modesto Orozco, Xavier de la D. Cruz posted to compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-10-29 22:54:53 as along with 3 people and 1 group ramensky cat_worth cjeans structural_bioinformatics
	Correlated mutations contain information about protein-protein interaction [My Copy] J Mol Biol, Vol. 271, No. 4. (Aug 1997), pp. 511-523. by F. Pazos, Helmer M. Citterich, G. Ausiello, A. Valencia posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Coevolving protein residues: maximum likelihood identification and relationship to structure [My Copy] J Mol Biol, Vol. 287, No. 1. (Mar 1999), pp. 187-198. by D. D. Pollock, W. R. Taylor, N. Goldman posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 7. (Mar 2000), pp. 3288-3291. by K. R. Wollenberg, W. R. Atchley posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Exploring a phylogenetic approach for the detection of correlated substitutions in proteins [My Copy] Mol Biol Evol, Vol. 17, No. 11. (Nov 2000), pp. 1753-1759. by P. Tuff, P. Darlu posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Correlated mutation analyses on very large sequence families [My Copy] Chembiochem, Vol. 3, No. 10. (Oct 2002), pp. 1010-1017. by L. Oliveira, A. C. Paiva, G. Vriend posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments [My Copy] Bioinformatics, Vol. 19, No. 6. (Apr 2003), pp. 750-755. by E. R. Tillier, T. W. Lui posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Using multiple sequence correlation analysis to characterize functionally important protein regions [My Copy] Protein Eng, Vol. 16, No. 6. (Jun 2003), pp. 397-406. by M. C. Saraf, G. L. Moore, C. D. Maranas posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Evaluating the predictability of conformational switching in RNA [My Copy] Bioinformatics, Vol. 20, No. 10. (Jul 2004), pp. 1573-1582. by B. Voss, C. Meyer, R. Giegerich posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	On evolutionary conservation of thermodynamic coupling in proteins [My Copy] J Biol Chem, Vol. 279, No. 18. (Apr 2004), pp. 19046-19050. by A. A. Fodor, R. W. Aldrich posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:49 as
	Influence of conservation on calculations of amino acid covariance in multiple sequence alignments [My Copy] Proteins, Vol. 56, No. 2. (Aug 2004), pp. 211-221. by A. A. Fodor, R. W. Aldrich posted to evolution from-sandra major-proposal sequence by caporaso to the group biomedical-nlp on 2006-10-10 15:02:48 as
	Coupled two-way clustering analysis of gene microarray data. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 22. (24 October 2000), pp. 12079-12084. by G. Getz, E. Levine, E. Domany posted to clustering major-proposal by caporaso to the group biomedical-nlp on 2006-10-06 17:23:09 as along with 5 people zufar ihpark wnpx shikin tvdbulck
	Structural interpretation of the mutations in the beta-cardiac myosin that have been implicated in familial hypertrophic cardiomyopathy [My Copy] Proc Natl Acad Sci U S A, Vol. 92, No. 9. (Apr 1995), pp. 3864-3868. by I. Rayment, H. M. Holden, J. R. Sellers, L. Fananapazir, N. D. Epstein posted to major-proposal mutation myosin protein by caporaso to the group biomedical-nlp on 2006-10-05 17:08:57 as
	[Familial hypertrophic cardiomyopathy: genes, mutations and animal models. A review] [My Copy] Invest Clin, Vol. 45, No. 1. (Mar 2004), pp. 69-99. by C. D. Ramírez, R. Padrón posted to major-proposal mutation myosin protein by caporaso to the group biomedical-nlp on 2006-10-05 17:08:57 as
	One third of Danish hypertrophic cardiomyopathy patients with MYH7 mutations have mutations [corrected] in MYH7 rod region [My Copy] Eur J Hum Genet, Vol. 13, No. 2. (Feb 2005), pp. 161-165. by L. Hougs, O. Havndrup, H. Bundgaard, et al.L. Kober, J. Vuust, L. A. Larsen, M. Christiansen, P. S. Andersen posted to major-proposal mutation myosin protein by caporaso to the group biomedical-nlp on 2006-10-05 17:08:57 as
	Myopathies associated with myosin heavy chain mutations [My Copy] Acta Myol, Vol. 23, No. 2. (Sep 2004), pp. 90-96. by A. Oldfors, H. Tajsharghi, N. Darin, C. Lindberg posted to major-proposal mutation myosin protein by caporaso to the group biomedical-nlp on 2006-10-05 17:08:56 as
	Dobzhansky-Muller incompatibilities in protein evolution. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 23. (12 November 2002), pp. 14878-14883. by A. S. Kondrashov, S. Sunyaev, F. A. Kondrashov posted to compensatory evolution major-proposal mutation protein by caporaso to the group biomedical-nlp on 2006-10-02 20:48:25 as along with 6 people and 1 group betainverse LeightonP mdimmic ccots cmm ramensky FAB-lab
	Horizontal gene transfer in prokaryotes: quantification and classification. [My Copy] Annu Rev Microbiol, Vol. 55 (2001), pp. 709-742. by E. V. Koonin, K. S. Makarova, L. Aravind posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:54:28 as along with 4 people and 3 groups ana jmeppley madhadron vwchan structural_bioinformatics Bioinformatics beta
	Divergent evolution within protein superfolds inferred from profile-based phylogenetics. [My Copy] Journal of molecular biology, Vol. 354, No. 3. (2 December 2005), pp. 722-737. by Douglas L. Theobald, Deborah S. Wuttke posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:52:12 as along with 6 people and 3 groups martainn cmura yuslinaz ana barry dlr structural_bioinformatics Bioinformatics McCammon
	A gold standard set of mechanistically diverse enzyme superfamilies. [My Copy] Genome Biol, Vol. 7, No. 1. (2006) by S. D. Brown, J. A. Gerlt, J. L. Seffernick, P. C. Babbitt posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:42:02 as along with 3 people kuhn robert JeremyZucker
	Evolution of enzyme superfamilies. [My Copy] Current opinion in chemical biology In Analytical techniques / Mechanisms, Vol. 10, No. 5. (October 2006), pp. 492-497. by Margaret E. Glasner, John A. Gerlt, Patricia C. Babbitt posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:40:56 as along with 6 people NickFurnham yuslinaz kuhn tny robert ucbcjbm
	Divergence of function in the thioredoxin fold suprafamily: evidence for evolution of peroxiredoxins from a thioredoxin-like ancestor. [My Copy] Biochemistry, Vol. 43, No. 44. (9 November 2004), pp. 13981-13995. by S. D. Copley, W. R. Novak, P. C. Babbitt posted to major-proposal by caporaso to the group biomedical-nlp on 2006-09-30 01:38:41 as
	Enzymes with extra talents: moonlighting functions and catalytic promiscuity. [My Copy] Curr Opin Chem Biol, Vol. 7, No. 2. (April 2003), pp. 265-272. by S. D. Copley posted to evolution function major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-30 01:36:51 as along with 3 people tomhebbron pauldobson i41m
	Evolutionary information for specifying a protein fold [My Copy] Nature, Vol. 437, No. 7058., pp. 512-518. by Michael Socolich, Steve W. Lockless, William P. Russ, Heather Lee, Kevin H. Gardner, Rama Ranganathan posted to major-proposal sca by caporaso to the group biomedical-nlp on 2006-09-29 23:11:51 as along with 16 people and 4 groups dfdong ucbcjbm ana barry lna bpb Einat balajis marcius gbart analogAI nirfriedman massivemayhem mingzhi bethbromley ca3295 structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Finding the fittest fold: using the evolutionary record to design new proteins. [My Copy] Cell, Vol. 122, No. 6. (23 September 2005), pp. 832-834. by R. G. Smock, L. M. Gierasch posted to major-proposal sca by caporaso to the group biomedical-nlp on 2006-09-29 23:11:06 as along with 2 people and 2 groups marcius analogAI BioinfoCIPF SGU-CIPF
	Natural-like function in artificial WW domains [My Copy] Nature, Vol. 437, No. 7058., pp. 579-583. by William P. Russ, Drew M. Lowery, Prashant Mishra, Michael B. Yaffe, Rama Ranganathan posted to major-proposal sca by caporaso to the group biomedical-nlp on 2006-09-29 23:09:08 as along with 6 people and 4 groups ana barry balajis marcius bethbromley ca3295 structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	5' cleavage site in eukaryotic pre-mRNA splicing is determined by the overall 5' splice region, not by the conserved 5' GU. [My Copy] Cell, Vol. 50, No. 2. (17 July 1987), pp. 237-246. by M. Aebi, H. Hornig, C. Weissmann posted to compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-09-29 00:56:39 as
	A second-site mutation at phenylalanine-137 that increases catalytic efficiency in the mutant aspartate-27----serine Escherichia coli dihydrofolate reductase. [My Copy] Biochemistry, Vol. 29, No. 37. (18 September 1990), pp. 8561-8569. by E. E. Howell, C. Booth, M. Farnum, J. Kraut, M. S. Warren posted to compensatory major-proposal mutation by caporaso to the group biomedical-nlp on 2006-09-29 00:55:39 as
	Long-Range Structural Effects in a Second-Site Revertant of a Mutant Dihydrofolate Reductase [My Copy] PNAS, Vol. 90, No. 24. (15 December 1993), pp. 11753-11756. by Ka Brown, Ee Howell, J. Kraut posted to structure mutation major-proposal compensatory bioi7712 by caporaso to the group biomedical-nlp on 2006-09-29 00:53:59 as
	Restoring allosterism with compensatory mutations in hemoglobin. [My Copy] Proc Natl Acad Sci U S A, Vol. 91, No. 24. (22 November 1994), pp. 11547-11551. by H. W. Kim, T. J. Shen, D. P. Sun, et al.N. T. Ho, M. Madrid, M. F. Tam, M. Zou, P. F. Cottam, C. Ho posted to compensatory major-proposal mutation structure by caporaso to the group biomedical-nlp on 2006-09-29 00:51:34 as
	Compensated deleterious mutations in insect genomes. [My Copy] Science, Vol. 306, No. 5701. (26 November 2004), pp. 1553-1554. by R. J. Kulathinal, B. R. Bettencourt, D. L. Hartl posted to mutation major-proposal evolution compensatory bioi7712 by caporaso to the group biomedical-nlp on 2006-09-28 23:57:10 as along with 2 people LeightonP bpcusack
	Combinatorial exploration of the catalytic site of a drug-resistant dihydrofolate reductase: creating alternative functional configurations [My Copy] Protein Engineering, Design and Selection, Vol. 17, No. 11. (November 2004), pp. 809-819. by Andreea R. Schmitzer, Francois Lepine, Joelle N. Pelletier posted to compensatory major-proposal mutation protein by caporaso to the group biomedical-nlp on 2006-09-28 23:50:40 as
	Comparing genomes in terms of protein structure: surveys of a finite parts list. [My Copy] FEMS Microbiol Rev, Vol. 22, No. 4. (October 1998), pp. 277-304. by M. Gerstein, H. Hegyi posted to comps evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-23 01:40:45 as
	Studying Genomes Through the Aeons: Protein Families, Pseudogenes and Proteome Evolution [My Copy] Journal of Molecular Biology, Vol. 318, No. 5. (17 May 2002), pp. 1155-1174. by Paul M. Harrison, Mark Gerstein posted to comps evolution major-proposal protein structural-biology by caporaso to the group biomedical-nlp on 2006-09-22 16:55:21 as
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to compensatory evolution major-proposal protein sca structural-biology by caporaso to the group biomedical-nlp on 2006-09-20 00:43:16 as along with 20 people and 2 groups mgomes qluo arjun_citeulike RebeccaHamer ynaito lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront choonpeng efge carlescorbi mingzhi yalexeev weisblum ca3295 BioinfoCIPF SGU-CIPF
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted to alignment comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-09-19 18:06:21 as along with 34 people biomcgary vprieto tomjad oceanwind Blackbeard db344 udivi daforerog Md_2007 sebk cen4ik usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk ahanora Haggan BioNica timflutre adijr xingxu newton1234 Lombardo_7
	Multiple sequence alignment [My Copy] Current Opinion in Structural Biology In Nucleic acids/Sequences and topology - Anna Marie Pyle and Jonathan Widom/Nick V Grishin and Sarah A Teichmann, Vol. 16, No. 3. (June 2006), pp. 368-373. by R. Edgar, S. Batzoglou posted to alignment comps evolution major-proposal sequence by caporaso to the group biomedical-nlp on 2006-09-19 18:03:29 as along with 10 people natstreet carlk treangen druvus CharlesM rabio cjeans mingzhi edvin nklee
	Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements [My Copy] Nucl. Acids Res., Vol. 29, No. 14. (15 July 2001), pp. 2994-3005. by Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, et al.Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, Stephen F. Altschul posted to alignment comps major-proposal sequence by caporaso to the group biomedical-nlp on 2006-09-19 18:01:22 as
	Allosteric determinants in guanine nucleotide-binding proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450. by M. E. Hatley, S. W. Lockless, S. K. Gibson, A. G. Gilman, R. Ranganathan posted to comps evolution major-proposal by caporaso to the group biomedical-nlp on 2006-09-14 22:34:07 as along with 5 people and 4 groups qluo barry lna Einat marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted to alignment evolution major-proposal protein by caporaso to the group biomedical-nlp on 2006-09-14 22:33:00 as along with 17 people and 5 groups mgomes qluo stevanspringer Einat marcius eckart_bindewald analogAI dgront sriram_s choonpeng Haggan rabio mottonen zambujo mingzhi bethbromley ca3295 Marcotte_Lab structural_bioinformatics FAB-lab BioinfoCIPF SGU-CIPF
	Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties. [My Copy] Journal of molecular biology, Vol. 315, No. 4. (25 January 2002), pp. 771-786. by Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz posted to comps function major-proposal by caporaso to the group biomedical-nlp on 2006-09-14 01:23:57 as along with 1 person and 3 groups marcius References for 3DSim paper BioinfoCIPF SGU-CIPF

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comps	74
protein	56
mutation	42
evolution	34
compensatory	30
structural-biology	28
function	26
compare	14
alignment	12
sequence	12
data-mining	10
database	10
pdb	8
sca	8
bioi7712	6
clustering	6
coevolution	6
structure	6
bioinformatics	4
fold-space	4
nlp	4
drug-design	2
genomics	2
high-throughput	2
information-theory	2
minor-proposal	2
myosin	2
rna	2
structural-genomics-consortium	2

Group: biomedical-nlp - with tag major-proposal [81 articles] Export

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