Group: biomedical-nlp - with tag nlp [73 articles] Export

Recent papers posted by members of the biomedical-nlp group with tag nlp

	Automatic Extraction of Protein Point Mutations Using a Graph Bigram Association [My Copy] PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e16. by Lawrence C. Lee, Florence Horn, Fred E. Cohen posted to nlp mutation by caporaso to the group biomedical-nlp on 2007-04-17 17:36:43 as along with 3 people and 2 groups cisevol aalibes yas BergmanLab T_lab
	Text-mining and information-retrieval services for molecular biology [My Copy] Genome Biology, Vol. 6, No. 7. (2005), 224. by Martin Krallinger, Alfonso Valencia posted to nlp bioinformatics by caporaso to the group biomedical-nlp on 2007-04-17 03:53:19 as along with 17 people and 5 groups carelcad artaban421 Scis0000002 martingerner lmichan henk-cul vkwn A_Hoogendam fisherp irenas Enro carlblesius textoris yas shimah78us cjeans spinaltap526 dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab
	BioCreAtIvE task 1A: gene mention finding evaluation. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 1 (2005) by A. Yeh, A. Morgan, M. Colosimo, L. Hirschman posted to biomedical nlp by caporaso to the group biomedical-nlp on 2006-12-04 05:35:49 as along with 4 people and 1 group yas helliontroy zlu johnkork T_lab
	Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering [My Copy] In TREC Notebook (2006) by Gregory J. Caporaso, William A. Baumgartner, Hyunmin Kim, et al.Zhiyong Lu, Helen L. Johnson, Olga Medvedeva, Anna Lindemann, Lynne M. Fox, Elizabeth K. White, Bretonnel K. Cohen, Lawrence Hunter posted to biomedical data-mining hunter-lab nlp by caporaso to the group biomedical-nlp on 2006-12-04 05:00:33 as along with 1 person helliontroy
	TREC 2006 Genomics Track Overview [My Copy] In TREC Notebook (2006) by William Hersh, Aaron M. Cohen, Phoebe Roberts, Hari K. Rekapalli posted to biomedical data-mining nlp by caporaso to the group biomedical-nlp on 2006-12-04 04:52:51 as
	Relevance based language models [My Copy] In SIGIR '01: Proceedings of the 24th annual international ACM SIGIR conference on Research and development in information retrieval (2001), pp. 120-127. by Victor Lavrenko, W. Bruce Croft posted to information-retrieval nlp by caporaso to the group biomedical-nlp on 2006-10-25 02:14:46 as along with 13 people and 4 groups holopoj zzb3886 jgronski dvallet mshossain lfriedl jelsas arjen ejmeij abellogin spinaltap526 codex iansimon NETS-UAM NETS ilps LanguageModeling
	Zone Identification in Biology Articles as a Basis for Information Extraction [My Copy] In Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications (2004), pp. 29-35. by Y. Mizuta, N. Collier posted to nlp zone by caporaso to the group biomedical-nlp on 2006-10-25 00:30:26 as
	A baseline feature set for learning rhetorical zones using full articles in the biomedical domain [My Copy] SIGKDD Explor. Newsl., Vol. 7, No. 1. (June 2005), pp. 52-58. by Tony Mullen, Yoko Mizuta, Nigel Collier posted to nlp zone by caporaso to the group biomedical-nlp on 2006-10-25 00:27:30 as along with 3 people and 1 group robert85 yas helliontroy T_lab
	Rule-based extraction of experimental evidence in the biomedical domain: the KDD Cup 2002 (task 1) [My Copy] SIGKDD Explor. Newsl., Vol. 4, No. 2. (December 2002), pp. 90-92. by Yizhar Regev, Michal Finkelstein-Landau, Ronen Feldman posted to nlp zone by caporaso to the group biomedical-nlp on 2006-10-25 00:26:05 as along with 3 people and 1 group Passerby yas balicea T_lab
	Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by M. Ashburner, C. A. Ball, J. A. Blake, et al.D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, G. Sherlock posted to bioinformatics nlp by caporaso to the group biomedical-nlp on 2006-10-24 19:09:35 as along with 71 people and 6 groups niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab FAB-lab
	A gene network for navigating the literature. [My Copy] Nat Genet, Vol. 36, No. 7. (July 2004) by R. Hoffmann, A. Valencia posted to bioinformatics nlp by caporaso to the group biomedical-nlp on 2006-10-24 18:55:18 as along with 10 people and 1 group epigenetics guhjy aalibes yas benny minostro adoms frohike Borelli beete T_lab
	OSIRIS: a tool for retrieving literature about sequence variants [My Copy] Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2567-2569. by Julio Bonis, Laura I. Furlong, Ferran Sanz posted to mutation nlp by caporaso to the group biomedical-nlp on 2006-10-10 21:53:51 as along with 2 people guhjy ibuch
	Mutation Mining—A Prospector's Tale [My Copy] Journal of Information Systems Frontiers, Vol. 8, No. 1. (February 2006), pp. 47-57. by Christopher J. O. Baker, René Witte posted to data-mining mutation nlp structural-biology by caporaso to the group biomedical-nlp on 2006-09-12 19:32:26 as
	Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (4 May 2006) by Marc Aubry, Annabelle Monnier, Celine Chicault, et al.Marie de Tayrac, Marie-Dominique D. Galibert, Anita Burgun, Jean Mosser posted to clustering data-mining function major-proposal nlp protein by caporaso to the group biomedical-nlp on 2006-09-06 21:05:29 as along with 5 people and 3 groups irenas yas dullhunk kkaiser yggdrasil dbk-lab T_lab IEG
	Meta-analysis of published transcriptional and translational fold changes reveals a preference for low-fold inductions. [My Copy] OMICS, Vol. 10, No. 1. (2006), pp. 15-27. by J. D. Wren, T. Conway posted to bioinformatics biomedical data-mining function nlp by caporaso to the group biomedical-nlp on 2006-09-06 21:01:29 as
	Facts from text-is text mining ready to deliver? [My Copy] PLoS Biol, Vol. 3, No. 2. (February 2005) by D. Rebholz-Schuhmann, H. Kirsch, F. Couto posted to biomedical data-mining nlp by caporaso to the group biomedical-nlp on 2006-08-30 19:49:43 as along with 16 people and 2 groups arafalov henk-cul raiyar snuppepuppan irenas yas dullhunk t11 onca dgront shimah78us daniel_schober dejori adoms jfr hpiwowar dbk-lab T_lab
	Automatic extraction of mutations from Medline and cross-validation with OMIM [My Copy] Nucl. Acids Res., Vol. 32, No. 1. (2 January 2004), pp. 135-142. by Dietrich Rebholz-Schuhmann, Stephane Marcel, Sylvie Albert, Ralf Tolle, Georg Casari, Harald Kirsch posted to comps major-proposal mutation nlp protein by caporaso to the group biomedical-nlp on 2006-08-30 19:46:33 as along with 4 people and 1 group lesikv Enro yas t11 T_lab
	Analyzing Entities and Topics in News Articles Using Statistical Topic Models [My Copy] Intelligence and Security Informatics, Vol. 3975 (January 2006), pp. 93-104. by David Newman, Chaitanya Chemudugunta, Padhraic Smyth, Mark Steyvers posted to cs nlp topic-modeling by caporaso to the group biomedical-nlp on 2006-08-01 23:16:36 as along with 3 people briordan tkmosk codex
	HubMed: a web-based biomedical literature search interface [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W745-747. by Alfred D. Eaton posted to biomedical nlp by caporaso to the group biomedical-nlp on 2006-07-31 19:44:34 as along with 9 people and 1 group anywei_yw Gaetan A_Hoogendam guhjy dayjm dullhunk kengg MarkLaurent adoms Plantandetc
	Combination of text-mining algorithms increases the performance. [My Copy] Bioinformatics (9 June 2006) by Rainer Malik, Lude Franke, Arno Siebes posted to biomedical nlp by caporaso to the group biomedical-nlp on 2006-07-31 19:38:23 as along with 9 people and 4 groups bqchinh cisevol snuppepuppan irenas guhjy yas fisherp markymaypo soramame_0518 BergmanLab dbk-lab T_lab ARTFL
	Exploring supervised and unsupervised methods to detect topics in biomedical text [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Minsuk Lee, Weiqing Wang, Hong Yu posted to biomedical nlp topic-modeling by caporaso to the group biomedical-nlp on 2006-07-31 19:33:10 as along with 3 people and 2 groups yas chirayu_kong markymaypo T_lab ARTFL
	Literature mining for the biologist: from information retrieval to biological discovery [My Copy] Nature Reviews Genetics, Vol. 7, No. 2. (01 February 2006), pp. 119-129. by Lars J. Jensen, Jasmin Saric, Peer Bork posted to biomedical nlp by caporaso to the group biomedical-nlp on 2006-07-31 16:34:45 as along with 46 people and 3 groups MARCOUNAM eudominguezmartin sm-rush LEONRANGEL artaban421 rocling bertelsen virolog dipenps druvus Zephyrus fgibson psique lmichan cisevol ilyashl henk-cul daforerog isimpson dansullivanblk yggdrasil Enro guhjy kuhn yas dullhunk hpiwowar dgront zlu jacky957 lynnefox jdiggans cjeans ghattem michaelmampaey dejori jandot mircea farzanehs larsjuhljensen adoms skumagai TheresaNiederberger satre akastrin ibuch BergmanLab T_lab ADMiRes
	Unsupervised learning of natural languages [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 33. (16 August 2005), pp. 11629-11634. by Zach Solan, David Horn, Eytan Ruppin, Shimon Edelman posted to bioinformatics nlp by caporaso to the group biomedical-nlp on 2006-06-21 21:22:03 as along with 25 people and 9 groups holopoj johnkork malaguena michaelfairley mthomure irenas parmentierf ansobol apaydin jrw garyfeng aufrank marimo grzegorz yas briordan Kevembuangga proportional paulclinger katja awarlau monster soramame_0518 hukkinen gaber dbk-lab ReadingLab ur-cls MathBio Impending_AI_breakthrough T_lab social_navigation ilps ahat
	Assessing thesaurus-based query expansion using the UMLS Metathesaurus. [My Copy] Proc AMIA Symp (2000), pp. 344-348. by W. Hersh, S. Price, L. Donohoe posted to biomedical nlp query-expansion by caporaso to the group biomedical-nlp on 2006-06-21 21:08:56 as along with 1 person and 1 group yas T_lab
	Statistical modeling of biomedical corpora: mining the Caenorhabditis Genetic Center Bibliography for genes related to life span. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (8 May 2006) by D M. Blei, K Franks, M I. Jordan, I S. Mian posted to machine-learning nlp by caporaso to the group biomedical-nlp on 2006-06-21 16:39:11 as along with 3 people and 3 groups irenas yas oannes dbk-lab T_lab Regulomics_UCHSC
	From paragraph to graph: latent semantic analysis for information visualization. [My Copy] Proc Natl Acad Sci USA, Vol. 101 Suppl 1, No. Suppl 1. (6 April 2004), pp. 5214-5219. by T. K. Landauer, D. Laham, M. Derr posted to feature-selection machine-learning nlp by caporaso to the group biomedical-nlp on 2006-06-16 18:46:15 as along with 4 people and 1 group pdessus yas mthomure hirachi T_lab
	Effective Mapping of Biomedical Text to the UMLS Metathesaurus: The MetaMap Program [My Copy] In Proc AMIA 2001 (2001), pp. 17-21. by A. Aronson posted to nlp ontology by caporaso to the group biomedical-nlp on 2006-06-13 18:28:21 as
	Hierarchical structures induce long-range dynamical correlations in written texts [My Copy] PNAS, Vol. 103, No. 21. (2006), pp. 7956-7961. by Alvarez E. Lacalle, B. Dorow, J. P. Eckmann, E. Moses posted to machine-learning nlp by caporaso to the group biomedical-nlp on 2006-05-31 23:56:02 as
	Biomedical Language Processing: What's Beyond PubMed? [My Copy] Molecular Cell, Vol. 21, No. 5. (03 March 2006), pp. 589-594. by Lawrence Hunter, K. Bretonnel Cohen posted to biomedical nlp by caporaso to the group biomedical-nlp on 2006-05-03 16:29:49 as along with 16 people and 2 groups billhao Gaetan artaban421 robert85 lmichan gavinhoran ogenex henk-cul farzanehs irenas andytseng yas hpiwowar jacky957 TheresaNiederberger satre dbk-lab T_lab
	Discovering semantic features in the literature: a foundation for building functional associations [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (26 January 2006), 41. by Monica Chagoyen, Pedro C. Saez, Hagit Shatkay, Jose Carazo, Alberto P. Montano posted to nlp reading-group by caporaso to the group biomedical-nlp on 2006-04-21 22:40:53 as along with 6 people and 3 groups artaban421 eesruiz svozil yas oannes helliontroy ImagCom - Biomedical Text Computing T_lab Regulomics_UCHSC
	Speech and Language Processing: An Introduction to Natural Language Processing, Computational Linguistics and Speech Recognition (Prentice Hall Series in Artificial Intelligence) [My Copy] (05 February 2000) by Daniel Jurafsky, James H. Martin posted to nlp by caporaso to the group biomedical-nlp on 2006-04-10 20:35:50 as along with 12 people pengyifan eddymier leidner metropol zlu bigbossman matwendt aklassen mircea asterix77 spinaltap526 quianominorleo
	GENIA corpus--semantically annotated corpus for bio-textmining. [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by J. D. Kim, T. Ohta, Y. Tateisi, J. Tsujii posted to biomedical nlp by caporaso to the group biomedical-nlp on 2006-03-28 00:50:16 as along with 10 people and 2 groups tsunol ogenex arafalov irenas zlu jacky957 bundschu johnkork leechuck aliekens dbk-lab generif_paper
	Natural language processing and systems biology [My Copy] In Artificial Intelligence Methods and Tools for Systems Biology (16 December 2004), pp. 147-174. by K. B. Cohen, L. Hunter edited by Werner Dubitzky, Francisco Azuaje posted to hunter-lab nlp by caporaso to the group biomedical-nlp on 2006-03-27 19:18:57 as along with 3 people and 2 groups mshossain yas bundschu T_lab generif_paper
	Extraction of regulatory gene/protein networks from Medline. [My Copy] Bioinformatics (26 July 2005) by Jasmin Saric, Lars Juhl J. Jensen, Rossitza Ouzounova, Isabel Rojas, Peer Bork posted to biomedical nlp reading-group by caporaso to the group biomedical-nlp on 2006-03-27 17:50:43 as along with 4 people kuhn balajis helliontroy larsjuhljensen
	Accomplishments and challenges in literature data mining for biology. [My Copy] Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1553-1561. by L. Hirschman, J. C. Park, J. Tsujii, L. Wong, C. H. Wu posted to nlp by caporaso to the group biomedical-nlp on 2006-03-26 03:36:35 as along with 7 people and 5 groups irenas Enro yas benny kehan vlachmore satre dbk-lab biodiversity_conservation Bioinformatics T_lab GrassBase
	PASBio: predicate-argument structures for event extraction in molecular biology. [My Copy] BMC Bioinformatics, Vol. 5 (19 October 2004) by T. Wattarujeekrit, P. K. Shah, N. Collier posted to nlp pas reading-group by caporaso to the group biomedical-nlp on 2006-03-26 03:28:15 as along with 5 people and 1 group yas helliontroy zlu johnkork mircea T_lab
	iProLINK: an integrated protein resource for literature mining. [My Copy] Comput Biol Chem, Vol. 28, No. 5-6. (December 2004), pp. 409-416. by Z. Z. Hu, I. Mani, V. Hermoso, H. Liu, C. H. Wu posted to nlp protein by caporaso to the group biomedical-nlp on 2006-03-26 03:26:56 as along with 1 person MarkLaurent
	Toward information extraction: identifying protein names from biological papers. [My Copy] Pac Symp Biocomput (1998), pp. 707-718. by K. Fukuda, A. Tamura, T. Tsunoda, T. Takagi posted to nlp protein by caporaso to the group biomedical-nlp on 2006-03-26 03:24:31 as along with 3 people and 1 group zlu bundschu johnkork generif_paper
	Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures. [My Copy] Pac Symp Biocomput (2000), pp. 505-516. by K. Humphreys, G. Demetriou, R. Gaizauskas posted to nlp protein structural-biology by caporaso to the group biomedical-nlp on 2006-03-26 03:09:12 as along with 1 person irenas
	Protein structures and information extraction from biological texts: the PASTA system. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 135-143. by R. Gaizauskas, G. Demetriou, P. J. Artymiuk, P. Willett posted to nlp protein structural-biology by caporaso to the group biomedical-nlp on 2006-03-26 03:07:30 as along with 4 people and 1 group farzanehs irenas vlachmore yggdrasil dbk-lab
	Concept recognition and the TREC Genomics tasks. [My Copy] In The Fourteenth Text REtrieval Conference (TREC 2005) Proceedings (2005) by Gregory J. Caporaso, William A. Baumgartner, Bretonnel K. Cohen, Helen L. Johnson, Jesse Paquette, Lawrence Hunter posted to nlp trec by caporaso to the group biomedical-nlp on 2006-03-25 18:11:25 as
	Data mining from Scientific Literature [My Copy] (2005) by Parantu Shah posted to nlp protein by caporaso to the group biomedical-nlp on 2006-03-25 17:58:38 as
	Evaluation of BioCreative assessment of task 2. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 1 (2005) by Christian Blaschke, Eduardo A. Leon, Martin Krallinger, Alfonso Valencia posted to biomedical nlp by caporaso to the group biomedical-nlp on 2006-03-25 16:45:00 as
	Automatic extraction of biological information from scientific text: protein-protein interactions. [My Copy] ISMB 1999 (1999), pp. 60-67. by Christian Blaschke, Miguel A. Andrade, Christos Ouzounis, Alfonso Valencia posted to biomedical nlp protein by caporaso to the group biomedical-nlp on 2006-03-25 16:45:00 as
	Overview of BioCreative Task 1B: normalized gene lists. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 1 (2005) by Lynette Hirschman, Marc Colosimo, Alexander Morgan, Alexander Yeh posted to nlp by caporaso to the group biomedical-nlp on 2006-03-25 16:40:13 as
	TREC Genomics track overview. [My Copy] In The thirteenth Text Retrieval Conference, {TREC} 2004 (2004), pp. 132-150. by William R. Hersh, Ravi T. Bhuptiraju, Laura Ross, Phoebe Johnson, Aaron M. Cohen, Dale F. Kraemer posted to bibtex-import nlp trec by caporaso to the group biomedical-nlp on 2006-03-25 16:40:13 as
	TREC Genomics track overview. [My Copy] In The {F}ourteenth {T}ext {RE}trieval {C}onference ({TREC} 2005) {P}roceedings (2005) by W. Hersh, A. Cohen, J. Yang, R. T. Bhupatiraju, P. Roberts, M. Herst edited by National I. For posted to bibtex-import nlp trec by caporaso to the group biomedical-nlp on 2006-03-25 16:40:13 as
	TREC Genomics track overview. [My Copy] In The twelfth Text Retrieval Conference, {TREC} 2003 (2003), pp. 14-23. by William Hersh, Ravi T. Bhupatiraju posted to bibtex-import nlp trec by caporaso to the group biomedical-nlp on 2006-03-25 16:40:13 as
	CONSTRUE/TIS: A system for content-based indexing of a database of news stories. [My Copy] In 2nd Annual Conference on Innovative Applications of Artificial Intelligence. (1990), pp. 1-5. by Philip J. Hayes, Steven P. Weinstein posted to bibtex-import nlp by caporaso to the group biomedical-nlp on 2006-03-25 16:40:13 as
	GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. [My Copy] Bioinformatics, Vol. 17, No. Suppl. 1. (2001), pp. S74-S82. by Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky posted to bibtex-import nlp by caporaso to the group biomedical-nlp on 2006-03-25 16:40:13 as

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bib	137
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language	129
all	91
ie	86
med	72
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full-text	11

Group: biomedical-nlp - with tag nlp [73 articles] Export

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