Group: EBI-regulation - with tag regulation [33 articles] Export

Recent papers posted by members of the EBI-regulation group with tag regulation

	Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs [My Copy] Nat Biotech, Vol. 22, No. 7. (July 2004), pp. 911-917. by Jan O. Korbel, Lars J. Jensen, Christian von Mering, Peer Bork posted to regulation bacteria by nickluscombe to the group EBI-regulation on 2007-03-21 17:14:55 as along with 7 people nikkiwithers coela hagechouchin443 bicko balajis olympos larsjuhljensen
	The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana [My Copy] PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e11. by Dirk Walther, Roman Brunnemann, Joachim Selbig posted to arabidopsis regulation transcription by nickluscombe to the group EBI-regulation on 2007-02-26 09:52:22 as
	Epigenetic Control of the foxp3 Locus in Regulatory T Cells [My Copy] PLoS Biology, Vol. 5, No. 2. (1 February 2007), e38. by Stefan Floess, Jennifer Freyer, Christiane Siewert, et al.Udo Baron, Sven Olek, Julia Polansky, Kerstin Schlawe, Hyun-Dong Chang, Tobias Bopp, Edgar Schmitt, Stefan Klein-Hessling, Edgar Serfling, Alf Hamann, Jochen Huehn posted to transcription tf regulation mammals by nickluscombe to the group EBI-regulation on 2007-01-31 15:47:41 as
	Transcriptional regulation of protein complexes within and across species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 4. (23 January 2007), pp. 1283-1288. by K. Tan, T. Shlomi, H. Feizi, T. Ideker, R. Sharan posted to transcription regulation protein-protein evolution by nickluscombe to the group EBI-regulation on 2007-01-24 04:30:09 as along with 6 people and 1 group HawkinsJohnC kaarsinogen icases zwang dylan77 carlk TNT
	Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. [My Copy] Nature biotechnology, Vol. 25, No. 1. (January 2007), pp. 117-124. by Peng Lu, Christine Vogel, Rong Wang, Xin Yao, Edward M. Marcotte posted to regulation expression by nickluscombe to the group EBI-regulation on 2007-01-22 12:56:01 as along with 8 people guhjy balabu aswin nicoleq dylan77 nedwards caseybrown ptrobajo
	Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles [My Copy] PLoS Biol, Vol. 5, No. 1. (9 January 2007), e8. by Jeremiah J. Faith, Boris Hayete, Joshua T. Thaden, et al.Ilaria Mogno, Jamey Wierzbowski, Guillaume Cottarel, Simon Kasif, James J. Collins, Timothy S. Gardner posted to regulation expression ecoli by nickluscombe to the group EBI-regulation on 2007-01-11 05:22:29 as along with 8 people and 1 group frohike icases jfr teuder aswin heliopais austin roys TNT
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to chip-chip expression regulation by nickluscombe to the group EBI-regulation on 2006-06-30 13:03:05 as along with 16 people stharward myzhang wangbo Borelli ggrot dragonrez bayesian wnpx koller frohike karfunkel roys dquest balicea carlk tvdbulck
	Predicting gene expression from sequence. [My Copy] Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198. by M. A. Beer, S. Tavazoie posted to bayesian expression predictions regulation tfbs by nickluscombe to the group EBI-regulation on 2006-06-30 12:16:01 as along with 12 people and 5 groups rsaito thegoose2 winterschlaefer tharris ana xwbcn adepace noano koller jrest phoenixzxl klo TranscriptionalRegulationWithThermodynamicModels C. elegans / WormBase structural_bioinformatics Bioinformatics EisenLab
	Evolution of transcriptional regulatory networks in microbial genomes. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 420-429. by M. S. Gelfand posted to bacteria regulation by nickluscombe to the group EBI-regulation on 2006-06-30 11:17:23 as along with 1 person kaarsinogen
	Integrated assessment and prediction of transcription factor binding. [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006) by A. Beyer, C. Workman, J. Hollunder, et al.D. Radke, U. Möller, T. Wilhelm, T. Ideker posted to chip-chip regulation by nickluscombe to the group EBI-regulation on 2006-06-30 10:45:14 as along with 3 people aswin koller mariakmejia
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted to mammals regulation transcription by nickluscombe to the group EBI-regulation on 2006-06-12 16:03:09 as along with 28 people and 3 groups Dulce wowalz maximilianh_otx hagechouchin443 sterovetta kieran101 snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp panetebrother smiddha franklin oscarluoinau heliopais ale emptyhb maralena mariakmejia Bioinformatics EisenLab microRNA
	Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli. [My Copy] Trends Microbiol, Vol. 14, No. 1. (January 2006), pp. 22-27. by A. Martínez-Antonio, S. C. Janga, H. Salgado, J. Collado-Vides posted to ecoli regulation by nickluscombe to the group EBI-regulation on 2006-06-12 11:22:06 as along with 1 person comb
	Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi [My Copy] PLoS Biol, Vol. 2, No. 12. (9 November 2004), e398. by Audrey P. Gasch, Alan M. Moses, Derek Y. Chiang, Hunter B. Fraser, Mark Berardini, Michael B. Eisen posted to evolution regulation yeast by nickluscombe to the group EBI-regulation on 2006-05-09 15:51:16 as along with 6 people and 2 groups roys matted mbeisen tsackton lusk cisevol EisenLab cis-regulatory-evolution
	Deciphering principles of transcription regulation in eukaryotic genomes [My Copy] Molecular Systems Biology by Dat H. Nguyen, Patrik D'Haeseleer posted to eukaryotes regulation transcription by nickluscombe to the group EBI-regulation on 2006-05-04 13:02:18 as
	Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. [My Copy] Genome Res, Vol. 16, No. 5. (May 2006), pp. 627-635. by M. J. Herrgård, B. S. Lee, V. Portnoy, B. Ø. Palsson posted to metabolism regulation yeast by nickluscombe to the group EBI-regulation on 2006-05-04 12:56:37 as along with 8 people and 2 groups michaelbarton JeremyZucker aswin kengg koller raiyar cjeans edwardmorrissey steinmetzlab Plantandetc
	Genome-wide prediction of G4 DNA as regulatory motifs: Role in Escherichia coli global regulation. [My Copy] Genome Research, Vol. 16 (May 2006), pp. 644-655. by Pooja Rawal, Veera, Jinoy Ravindran, et al.Nirmal Kumar, Kangkan Halder, Rakesh Sharma, Mitali Mukerji, Swapan K. Das, Shantanu Chowdhury posted to ecoli regulation by nickluscombe to the group EBI-regulation on 2006-05-04 12:55:20 as
	Network motifs in the transcriptional regulation network of Escherichia coli. [My Copy] Nature genetics, Vol. 31, No. 1. (22 May 2002), pp. 64-68. by Shai S. Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon posted to ecoli networks regulation by nickluscombe to the group EBI-regulation on 2006-05-04 12:43:01 as along with 19 people antonkratz vtraag sergiun mtagaya kaarsinogen cswinburne jstajic jjray ssb gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena hannahrajasingh Borelli ethkim
	The expanding transcriptome: the genome as the 'Book of Sand' [My Copy] The EMBO Journal, Vol. aop, No. current. (02 March 2006) by Luis, Juan Valcarcel posted to eukaryotes expression regulation transcription by nickluscombe to the group EBI-regulation on 2006-05-03 12:03:12 as along with 4 people balajis JeffR100 farhat heliopais
	Structure of the Escherichia coli FlhDC complex, a prokaryotic heteromeric regulator of transcription. [My Copy] J Mol Biol, Vol. 355, No. 4. (27 January 2006), pp. 798-808. by S. Wang, R. T. Fleming, E. M. Westbrook, P. Matsumura, D. B. McKay posted to bacteria regulation by nickluscombe to the group EBI-regulation on 2006-04-25 11:51:08 as along with 1 person aswin
	Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity. [My Copy] Science (23 March 2006) by Shannon Fisher, Elizabeth A A. Grice, Ryan M M. Vinton, Seneca L L. Bessling, Andrew S S. McCallion posted to evolution regulation by nickluscombe to the group EBI-regulation on 2006-04-13 23:52:06 as along with 5 people and 2 groups aprasad adepace maximilianh cisevol emptyhb EisenLab cis-regulatory-evolution
	CTCF Mediates Interchromosomal Colocalization Between Igf2/H19 and Wsb1/Nf1 [My Copy] Science, Vol. 312, No. 5771. (14 April 2006), pp. 269-272. by Jian Q. Ling, Tao Li, Ji F. Hu, et al.Thanh H. Vu, Hui L. Chen, Xin W. Qiu, Athena M. Cherry, Andrew R. Hoffman posted to expression regulation by nickluscombe to the group EBI-regulation on 2006-04-13 23:51:19 as along with 1 person JeffR100
	MOLECULAR BIOLOGY: Managing Associations Between Different Chromosomes [My Copy] Science, Vol. 312, No. 5771. (14 April 2006), pp. 207-208. by Charalampos G. Spilianakis, Richard A. Flavell posted to expression regulation by nickluscombe to the group EBI-regulation on 2006-04-13 23:49:32 as
	Target hub proteins serve as master regulators of development in yeast. [My Copy] Genes Dev, Vol. 20, No. 4. (15 February 2006), pp. 435-448. by A. R. Borneman, J. A. Leigh-Bell, H. Yu, P. Bertone, M. Gerstein, M. Snyder posted to chip-chip regulation transcription yeast by nickluscombe to the group EBI-regulation on 2006-04-11 16:16:49 as along with 3 people aswin koller carlk
	The cell cycle-regulated genes of Schizosaccharomyces pombe. [My Copy] PLoS Biol, Vol. 3, No. 7. (July 2005) by A. Oliva, A. Rosebrock, F. Ferrezuelo, et al.S. Pyne, H. Chen, S. Skiena, B. Futcher, J. Leatherwood posted to expression regulation transcription yeast by nickluscombe to the group EBI-regulation on 2006-04-06 12:52:27 as
	Genome-wide oscillation of transcription in yeast. [My Copy] Trends Biochem Sci (22 February 2006) by Hans Reinke, David Gatfield posted to regulation transcription yeast by nickluscombe to the group EBI-regulation on 2006-04-06 12:52:02 as along with 2 people entropy Darko
	An excitable gene regulatory circuit induces transient cellular differentiation. [My Copy] Nature, Vol. 440, No. 7083. (23 March 2006), pp. 545-550. by Gürol M. Süel, Jordi Garcia-Ojalvo, Louisa M. Liberman, Michael B. Elowitz posted to differentiation regulation by nickluscombe to the group EBI-regulation on 2006-04-06 11:47:13 as along with 14 people yyfwuhan ashishanand megraw dswan rklancer alexg madhadron balabu comb dbikard mhucka margaritis paurue jjray
	In and around the nucleus [My Copy] Nature Cell Biology, Vol. 8, No. 1., pp. 3-6. by Asifa Akhtar, Gregory A. Matera posted to nuclear regulation by nickluscombe to the group EBI-regulation on 2006-04-06 11:34:53 as along with 1 person lisa1
	Regulating quiescence: new insights into hematopoietic stem cell biology. [My Copy] Dev Cell, Vol. 10, No. 4. (April 2006), pp. 415-417. by E. Passegué, A. J. Wagers posted to cells regulation stem by nickluscombe to the group EBI-regulation on 2006-04-05 21:40:12 as
	RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by H. Salgado, S. Gama-Castro, M. Peralta-Gil, et al.E. Díaz-Peredo, F. Sánchez-Solano, A. Santos-Zavaleta, I. Martínez-Flores, V. Jiménez-Jacinto, C. Bonavides-Martínez, J. Segura-Salazar, A. Martínez-Antonio, J. Collado-Vides posted to bacteria database regulation transcription by nickluscombe to the group EBI-regulation on 2006-04-04 14:17:54 as along with 1 person balajis
	Genomic analysis of gene expression relationships in transcriptional regulatory networks. [My Copy] Trends Genet, Vol. 19, No. 8. (August 2003), pp. 422-427. by H. Yu, N. M. Luscombe, J. Qian, M. Gerstein posted to regulation transcription yeast by nickluscombe to the group EBI-regulation on 2006-04-02 20:13:08 as along with 1 person karfunkel
	A genomic perspective on plant transcription factors. [My Copy] Curr Opin Plant Biol, Vol. 3, No. 5. (October 2000), pp. 423-434. by J. L. Riechmann, O. J. Ratcliffe posted to arabidopsis regulation transcription by nickluscombe to the group EBI-regulation on 2006-04-02 19:18:03 as
	Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes [My Copy] Science, Vol. 290, No. 5499. (15 December 2000), pp. 2105-2110. by J. L. Riechmann, J. Heard, G. Martin, et al.L. Reuber, -Z, Jiang, J. Keddie, L. Adam, O. Pineda, O. J. Ratcliffe, R. R. Samaha, R. Creelman, M. Pilgrim, P. Broun, J. Z. Zhang, D. Ghandehari, B. K. Sherman, -L posted to arabidopsis regulation transcription by nickluscombe to the group EBI-regulation on 2006-04-02 19:17:33 as along with 6 people and 1 group mlog megraw tny kengg Hummel hplatero Plantandetc
	Signal transduction and the control of gene expression. [My Copy] Science (New York, N.Y.), Vol. 295, No. 5556. (1 February 2002), pp. 813-818. by Ali H. Brivanlou, James E. Darnell posted to mammals regulation transcription by nickluscombe to the group EBI-regulation on 2006-04-02 19:09:01 as along with 4 people and 1 group agustinarce vertikalist aswin karfunkel BTS-PT-AS-CS

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transcription	431
gene	184
network	171
mirna	166
review	161
expression	150
microrna	145
evolution	136
celegans	100
elegans	99
c_elegans	98
caenorhabditis_elegans	98
nematode	98
wormbase	98
for-the-review	97
biodegradation	92
networks	82
yeast	79
article	73
promoter	61
bacteria	58
tfbs	54
development	52
integration	52
motif	51
genomics	45
function	44
chromatin	43
rna	42
bioinformatics	40
human	39
cancer	38
drosophila	38
emotion	35
genetics	33
biology	32
prediction	32
metabolism	31
signaling	31
insider-trading	29
mechanism	29
policy	29
cell	28
cloned_genes	28
dna_sequence	28
model	28
transcriptional	27
cell_lineage	26
combinatorial	25
microarray	25
apoptosis	24
control	24
genome	24
internet	24
protein	24
governance	23
interactions	23
zzp	23
cell-cycle	22
clostridium	22
epigenetics	22
eu	22
splicing	22
activation	21
analysis	21
spermatogenesis	21
caenorhabditis_genetics	20
disclosure	20
processing	20
quality	20
receptor	20
sequence	20
translation	20
dna	19
gene-expression	19
pathway	19
target	19
enhancer	18
stress	18
transcription_factor	18
auxin	17
bayesian	17
differentiation	17
electricity	17
interaction	17
ncrna	17
aromatase	16
as	16
devel-larval	16
epigenetic	16
histone	16
insulin	16
theory	16
binding	15
estrogen	15
freshwater	15
gene_expression	15
membrane	15
mrna	15
thelist	15

Group: EBI-regulation - with tag regulation [33 articles] Export

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