Group: structural_bioinformatics - library 1426 articles Export

	ANGLOR: A Composite Machine-Learning Algorithm for Protein Backbone Torsion Angle Prediction [My Copy] PLoS ONE, Vol. 3, No. 10. (15 October 2008), e3400. by Sitao Wu, Yang Zhang posted to pb by svozil to the group structural_bioinformatics on 2008-12-31 13:50:59 as along with 1 group Bioinformatics
	Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204. by Duncan Hull, Steve R. Pettifer, Douglas B. Kell posted to classic data_integration review by chad_davis to the group structural_bioinformatics on 2008-10-31 08:58:42 as along with 191 people and 16 groups radagabriel mfenner jalonsoarevalo StemCellWorkstation martica840527 agbiotec LinaMelo claudine acabezas aaltenburger sarelfa Anita13 Dannycoutinho tmar lucybuykx ltitodem dcombe christianholz schoeband dgovoni maren antonkratz mzkbnt girabbit mawds tlb56 sstose klexa n00c slr52 jandot applebyb timhubbard yangjustinc CameronNeylon heliopais sarabatts aldra Prlwrlczkwsky CPAP amyfyn vellino ulrichs malkav30 cristiangutierrez rockrescue victorantoniomtz Tita NancyAbigail Nembrod jclau clarabermudez tanyacovi6 jmohan polivares artaban421 nperoni eudominguezmartin nhoussos MARCOUNAM carelcad euanlawson furlong stevepettifer flipip23 virolog ZoeThomas pawelsobko tnhh kbkbk8 rickl nellapower mcentyre wujastyk beanformer msanchof2009 dmaweb bhengeveld jpgrolle wsumthai daforerog INK-SSCI-SCI quianominorleo tux2000 cogs AJCann robsyme anthrogeek lmichan sainsworth hkimura western4uk cybob10 kevinemamy akriesch williamgunn carlblesius Effie alhoori mikel_egana tilanka coldmeadow yas Tomste mseyfang fitzgeraldp2 fungal eduardod5 DavidG67 chenlc03 stempvoort lesikv jmueller17 sirexkat Koh akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 guhjy neils norris jago druvus emayorga GeeSharpMinor fgibson Zephyrus leonardo dullhunk Zotero en español Journal picks Health_Informatics Herramientas20 Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org eLearning in Leicester mgh-lcs NaCTeM MEHTRadiology Département Hypermédia - Master NET JLab BergmanLab McCammon Poverty Alleviation from Access to Knowledge Roswell Cancer Crosstalk
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to correlated_mutations phylogeny protein_protein review by barry to the group structural_bioinformatics on 2008-10-02 20:24:17 as along with 8 people and 2 groups chica biomcgary qluo balicea grahamc fhsantanna marti sjcockell McCammon Bioinformatics
	An Enzymatic Atavist Revealed in Dual Pathways for Water Activation [My Copy] PLoS Biology, Vol. 6, No. 8. (1 August 2008), e206. by Donghong Min, Helen R. Josephine, Hongzhi Li, et al.Clemens Lakner, Iain S. Macpherson, Gavin J. Naylor, David Swofford, Lizbeth Hedstrom, Wei Yang posted to imp_dehydrogenase qm_mm by barry to the group structural_bioinformatics on 2008-08-26 18:45:20 as along with 2 groups Bioinformatics McCammon
	Prediction of disordered regions in proteins based on the meta approach [My Copy] Bioinformatics (20 April 2008), btn195. by Takashi Ishida, Kengo Kinoshita posted to algorithm classification disorder ensemble proj_disocons structure by chad_davis to the group structural_bioinformatics on 2008-04-28 09:47:26 as along with 1 person niallhaslam
	Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets. [My Copy] Journal of molecular biology, Vol. 377, No. 4. (4 April 2008), pp. 1265-1278. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to no-tag by barry to the group structural_bioinformatics on 2008-03-20 17:04:58 as along with 2 people martainn cdeane
	An iterative knowledge-based scoring function for protein-protein recognition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Sheng-You Huang, Xiaoqin Zou posted to algorithms binding competition docking phd statistics structure by chad_davis to the group structural_bioinformatics on 2008-02-05 09:54:41 as along with 1 person and 1 group whitead Jiang Research Group
	Molecular Dynamic Simulations of Cisplatin- and Oxaliplatin-d(GG) Intrastand Cross-links Reveal Differences in their Conformational Dynamics. [My Copy] J Mol Biol (23 August 2007) by Shantanu Sharma, Peng Gong, Brenda Temple, Debadeep Bhattacharyya, Nikolay V V. Dokholyan, Stephen G G. Chaney posted to anticancer cancer cisplatin dna_structure drug oxaliplatin publications by shantanu to the group structural_bioinformatics on 2007-09-30 18:06:41 as along with 3 groups MathBio Bioinformatics Computational-Neurobiology
	Signal Propagation in Proteins and Relation to Equilibrium Fluctuations [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e172. by Chakra Chennubhotla, Ivet Bahar posted to allosteric correlated_motions nma protein_dynamics protein_structure time_series_analysis by barry to the group structural_bioinformatics on 2007-09-22 23:29:36 as along with 1 person and 1 group apaydin Bioinformatics
	Association of putative concave protein-binding sites with the fluctuation behavior of residues. [My Copy] Protein Sci, Vol. 15, No. 10. (October 2006), pp. 2265-2277. by A. Ertekin, R. Nussinov, T. Haliloglu posted to protein_protein protein_dynamics nma by barry to the group structural_bioinformatics on 2007-09-04 20:13:14 as along with 1 person and 1 group aqeel Bioinformatics
	Design of multi-specificity in protein interfaces. [My Copy] PLoS computational biology, Vol. 3, No. 8. (1 August 2007), e164. by Elisabeth L. Humphris, Tanja Kortemme posted to protein_structure interface design by Einat to the group structural_bioinformatics on 2007-09-02 16:02:53 as along with 9 people and 2 groups bmduggan allmensch msuarezdiez jwm bicko dpollard Scis0000002 phoenixzxl marck Bioinformatics EisenLab
	Automated Protein Subfamily Identification and Classification [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e160. by Duncan P. Brown, Nandini Krishnamurthy, Kimmen Sjölander posted to sub-family function-prediction by Einat to the group structural_bioinformatics on 2007-09-02 16:00:00 as along with 5 people djkt druvus cjeans mingzhi shung
	Protein folding: Then and now. [My Copy] Arch Biochem Biophys (8 June 2007) by Yiwen Chen, Feng Ding, Huifen Nie, et al.Adrian W W. Serohijos, Shantanu Sharma, Kyle C C. Wilcox, Shuangye Yin, Nikolay V V. Dokholyan posted to publications protein_folding by shantanu to the group structural_bioinformatics on 2007-07-02 01:12:30 as along with 1 person and 7 groups choonpeng MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Opposing activities protect against age-onset proteotoxicity. [My Copy] Science (New York, N.Y.), Vol. 313, No. 5793. (15 September 2006), pp. 1604-1610. by Ehud Cohen, Jan Bieschke, Rhonda M. Perciavalle, Jeffery W. Kelly, Andrew Dillin posted to promoter hsf-1 daf-2 daf-16 alzheimers aging abeta1-42 by ana to the group structural_bioinformatics on 2007-06-04 03:30:00 as along with 3 people and 2 groups bratwurst thegoose2 tharris C. elegans / WormBase Bioinformatics
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted to new by ana to the group structural_bioinformatics on 2007-06-02 04:04:46 as along with 17 people and 2 groups farhat wowalz aprasad cajunsushi treangen druvus postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou idonaldson yevishere isimpson Bioinformatics EBI-regulation
	Applied bioinformatics for the identification of regulatory elements. [My Copy] Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287. by W. W. Wasserman, A. Sandelin posted to new by ana to the group structural_bioinformatics on 2007-06-02 04:03:24 as along with 18 people and 7 groups wowalz yas icases chad_davis moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin mariakmejia isimpson Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
	Practical strategies for discovering regulatory DNA sequence motifs. [My Copy] PLoS computational biology, Vol. 2, No. 4. (1 April 2006), e36. by K. D. MacIsaac, E. Fraenkel posted to new by ana to the group structural_bioinformatics on 2007-06-02 03:05:13 as along with 16 people and 1 group leemond31 Dulce maximilianh heliopais daforerog natstreet druvus giovenko nuin bryankr chad_davis balicea hggr GustavoLacerda svdate kristallreiner Bioinformatics
	Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans [My Copy] Nature, Vol. 424, No. 6946. (17 July 2003), pp. 277-283. by Coleen T. Murphy, Steven A. Mccarroll, Cornelia I. Bargmann, et al.Andrew Fraser, Ravi S. Kamath, Julie Ahringer, Hao Li, Cynthia Kenyon posted to new by ana to the group structural_bioinformatics on 2007-06-02 03:04:32 as along with 3 people and 2 groups thegoose2 tharris johncumbers C. elegans / WormBase Bioinformatics
	SISYPHUS--structural alignments for proteins with non-trivial relationships. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by A. Andreeva, A. Prlić, T. J. Hubbard, A. G. Murzin posted to structure_comparison structure_classification protein_structure by ana to the group structural_bioinformatics on 2007-05-29 23:18:59 as along with 5 people and 1 group timhubbard barry dgront massivemayhem martainn Bioinformatics
	Relating destabilizing regions to known functional sites in proteins. [My Copy] BMC bioinformatics, Vol. 8 (30 April 2007), 141. by Benoît H. Dessailly, Marc F. Lensink, Shoshana J. Wodak posted to protein-stability function-prediction by Einat to the group structural_bioinformatics on 2007-05-25 11:28:43 as along with 1 person and 1 group bdessailly Orengo Group Journal Picks
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to transcription_factor promoter_finding by ana to the group structural_bioinformatics on 2007-05-22 01:12:46 as along with 38 people and 5 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	The path of DNA in the kinetochore. [My Copy] Curr Biol, Vol. 16, No. 8. (18 April 2006) by K. Bloom, S. Sharma, N. V. Dokholyan posted to publications chromatin centromere by shantanu to the group structural_bioinformatics on 2007-05-05 17:46:09 as along with 7 groups MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	iFold: a platform for interactive folding simulations of proteins. [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2693-2694. by S. Sharma, F. Ding, H. Nie, et al.D. Watson, A. Unnithan, J. Lopp, D. Pozefsky, N. V. Dokholyan posted to simulation publications protein_folding by shantanu to the group structural_bioinformatics on 2007-04-26 00:50:16 as along with 1 person and 7 groups plofje MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Multiscale Modeling of Nucleosome Dynamics [My Copy] Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1457-1470. by Shantanu Sharma, Feng Ding, Nikolay V. Dokholyan posted to simulation publications nucleosome chromatin by shantanu to the group structural_bioinformatics on 2007-04-26 00:49:03 as along with 5 people and 8 groups afenley aalibes choonpeng skoch3 phisics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology Koch_Lab
	PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes. [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3316-3317. by S. P. Gore, D. F. Burke, T. L. Blundell posted to protein_structure complex by Einat to the group structural_bioinformatics on 2007-04-16 17:14:27 as along with 4 people bicko skhadar massivemayhem medic0747
	A comparative genomic view of clostridial sporulation and physiology [My Copy] Nat Rev Micro, Vol. 3, No. 12. (24 October 2005), pp. 969-978. by Carlos J. Paredes, Keith V. Alsaker, Eleftherios T. Papoutsakis posted to sporulation evolution by Einat to the group structural_bioinformatics on 2007-04-11 13:33:45 as along with 2 people RasmusJensen Winzer
	Cyanobacterial two-component proteins: structure, diversity, distribution, and evolution. [My Copy] Microbiol Mol Biol Rev, Vol. 70, No. 2. (June 2006), pp. 472-509. by M. K. Ashby, J. Houmard posted to sporulation evolution by Einat to the group structural_bioinformatics on 2007-04-11 13:32:38 as
	The Generation of New Protein Functions by the Combination of Domains [My Copy] Structure, Vol. 15, No. 1. (January 2007), pp. 85-99. by Matthew Bashton, Cyrus Chothia posted to protein-function domains by Einat to the group structural_bioinformatics on 2007-04-11 13:19:49 as along with 7 people cmzmasek ucbcjbm tny madhadron choonpeng cjeans bioinfolib
	Structure, function and evolution of multidomain proteins. [My Copy] Current opinion in structural biology, Vol. 14, No. 2. (April 2004), pp. 208-216. by Christine Vogel, Matthew Bashton, Nicola D. Kerrison, Cyrus Chothia, Sarah A. Teichmann posted to review protein_structure protein-function evolution domains by Einat to the group structural_bioinformatics on 2007-04-11 13:18:01 as along with 5 people wiedenhoeft dgront Schmidtc cjeans cmzmasek
	The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins. [My Copy] Structure, Vol. 12, No. 6. (June 2004), pp. 917-925. by J. Gough, C. Chothia posted to protein_structure protein-function conservation by Einat to the group structural_bioinformatics on 2007-04-11 13:00:07 as along with 1 person cjeans
	Protein Family Expansions and Biological Complexity [My Copy] PLoS Comput Biol, Vol. 2, No. 5. (26 May 2006), e48. by Christine Vogel, Cyrus Chothia posted to protein-families complex by Einat to the group structural_bioinformatics on 2007-04-11 12:56:28 as along with 5 people and 1 group igchoi ccots caporaso cjeans cmzmasek biomedical-nlp
	The SUPERFAMILY database in 2007: families and functions. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by D. Wilson, M. Madera, C. Vogel, C. Chothia, J. Gough posted to protein_structure protein-families by Einat to the group structural_bioinformatics on 2007-04-11 12:40:09 as along with 2 people dullhunk siebertm
	3D complex: a structural classification of protein complexes. [My Copy] PLoS computational biology, Vol. 2, No. 11. (17 November 2006) by Emmanuel D. Levy, Jose B. Pereira-Leal, Cyrus Chothia, Sarah A. Teichmann posted to protein_structure complex by Einat to the group structural_bioinformatics on 2007-04-11 12:38:06 as along with 3 people flbarroso bicko chad_davis
	Structural and Chemical Profiling of the Human Cytosolic Sulfotransferases [My Copy] PLoS Biology, Vol. 5, No. 5. (1 May 2007), e97. by Abdellah Allali-Hassani, Patricia W. Pan, Ludmila Dombrovski, et al.Rafael Najmanovich, Wolfram Tempel, Aiping Dong, Peter Loppnau, Fernando Martin, Janet Thonton, Aled M. Edwards, Alexey Bochkarev, Alexander N. Plotnikov, Masoud Vedadi, Cheryl H. Arrowsmith posted to structural_genomics jcsg family_analysis by ana to the group structural_bioinformatics on 2007-04-10 19:37:51 as along with 1 group Bioinformatics
	Definitions of enzyme function for the structural genomics era. [My Copy] Curr Opin Chem Biol, Vol. 7, No. 2. (April 2003), pp. 230-237. by P. C. Babbitt posted to jcsg function_evolution by ana to the group structural_bioinformatics on 2007-03-28 04:12:07 as along with 1 person and 1 group blackbart Bioinformatics
	Quantitative phylogenetic assessment of microbial communities in diverse environments. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130. by C. von Mering, P. Hugenholtz, J. Raes, et al.S. G. Tringe, T. Doerks, L. J. Jensen, N. Ward, P. Bork posted to metagenomics by ana to the group structural_bioinformatics on 2007-03-28 03:29:24 as along with 18 people and 6 groups pkm michaelbarton idoerg sriesenfeld skembel kozo-ni nickluscombe michC bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes mjetten jlgreen djkt Bioinformatics EBI-regulation Microbial-Ecology microbiology_nijmegen Green Lab iSEEM
	An obesity-associated gut microbiome with increased capacity for energy harvest. [My Copy] Nature, Vol. 444, No. 7122. (21 December 2006), pp. 1027-1031. by Peter J. Turnbaugh, Ruth E. Ley, Michael A. Mahowald, Vincent Magrini, Elaine R. Mardis, Jeffrey I. Gordon posted to metagenomics by ana to the group structural_bioinformatics on 2007-02-20 19:58:09 as along with 8 people and 2 groups robertrentzsch Thaverkamp Zephyrus jmeppley michC srfairclough wenhan GX Orengo Group Journal Picks Bioinformatics
	Metagenomic Analysis of the Human Distal Gut Microbiome [My Copy] Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359. by Steven R. Gill, Mihai Pop, Robert T. DeBoy, et al.Paul B. Eckburg, Peter J. Turnbaugh, Buck S. Samuel, Jeffrey I. Gordon, David A. Relman, Claire M. Fraser-Liggett, Karen E. Nelson posted to metagenomics by ana to the group structural_bioinformatics on 2007-02-20 19:57:25 as along with 22 people and 8 groups cmzmasek Thaverkamp jbhiatt windman83 Zephyrus vvoorr skembel Yanno dayjm jmeppley dchughes cmm neveaire hcmorton michC bluto azazello beatrizfernandez wenhan xingxu host-bacteria melissa_wos Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID Microbial-Ecology Genetics-of-Gambling
	Bioinformatics for whole-genome shotgun sequencing of microbial communities. [My Copy] PLoS Comput Biol, Vol. 1, No. 2. (July 2005) by K. Chen, L. Pachter posted to metagenomics by ana to the group structural_bioinformatics on 2007-02-20 19:52:42 as along with 9 people and 2 groups dakelley azazello knaseanka jmeppley dullhunk bluto wenhan djkt druvus Bioinformatics iSEEM
	Microfluidic digital PCR enables multigene analysis of individual environmental bacteria. [My Copy] Science, Vol. 314, No. 5804. (1 December 2006), pp. 1464-1467. by E. A. Ottesen, J. W. Hong, S. R. Quake, J. R. Leadbetter posted to no-tag by ana to the group structural_bioinformatics on 2007-01-24 08:29:39 as along with 2 people and 2 groups brant ISBFluidics Bioinformatics EisenLab
	MUSTANG: A multiple structural alignment algorithm [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 3. (2006), pp. 559-574. by Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, Arthur M. Lesk posted to structure_comparison structure_alignment protein_structure by ana to the group structural_bioinformatics on 2007-01-16 06:02:52 as along with 4 people and 2 groups karbak jwm rabio Thaverkamp Bioinformatics Microbial-Ecology
	Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 209-225. by K. Simons posted to protein_structure structure_fragments structure_prediction by ana to the group structural_bioinformatics on 2006-11-03 22:45:52 as along with 11 people and 1 group paddydu Diego_Prada reyez guxiyou jwm vavi wouterboomsma j3xucite hmk mijam joule Bioinformatics
	Protein decoy assembly using short fragments under geometric constraints. [My Copy] Biopolymers, Vol. 68, No. 3. (March 2003), pp. 278-285. by R. Kolodny, M. Levitt posted to modeling protein_structure structure_prediction by ana to the group structural_bioinformatics on 2006-10-31 22:45:00 as along with 1 person and 1 group lgarreta Bioinformatics
	Fold classification based on secondary structure – how much is gained by including loop topology? [My Copy] BMC Structural Biology, Vol. 6 (08 March 2006), 3. by Jieun Jeong, Piotr Berman, Teresa Przytycka posted to fold_space protein_structure secondary_structure structure_classification by ana to the group structural_bioinformatics on 2006-10-31 22:39:14 as along with 2 people and 1 group Einat martainn Bioinformatics
	A protein taxonomy based on secondary structure. [My Copy] Nature structural biology, Vol. 6, No. 7. (July 1999), pp. 672-682. by T. Przytycka, R. Aurora, G. D. Rose posted to fold_space protein_structure secondary_structure structure_classification by ana to the group structural_bioinformatics on 2006-10-31 22:37:41 as along with 1 person and 1 group jwm Bioinformatics
	Backsteps induced by nucleotide analogs suggest the front head of kinesin is gated by strain [My Copy] Proceedings Of The National Academy Of Sciences Of The United States Of America, Vol. 103, No. 21. (23 May 2006), pp. 8054-8059. by Nicholas R. Guydosh, Steven M. Block posted to kinesin motor_model by barry to the group structural_bioinformatics on 2006-10-30 19:23:47 as along with 1 group Bioinformatics
	Protein flexibility acclimatizes photosynthetic energy conversion to the ambient temperature [My Copy] Nature, Vol. 442, No. 7104. (23 July 2006), pp. 827-830. by Oksana Shlyk-Kerner, Ilan Samish, David Kaftan, et al.Neta Holland, Maruthi P. S. Sai, Hadar Kless, Avigdor Scherz posted to domain_motions protein_design protein_dynamics protein_structure by barry to the group structural_bioinformatics on 2006-08-16 21:45:51 as along with 1 group Bioinformatics
	Long loops in proteins. [My Copy] Protein Eng, Vol. 8, No. 11. (November 1995), pp. 1093-1101. by A. C. Martin, K. Toda, H. J. Stirk, J. M. Thornton posted to indels loop by ana to the group structural_bioinformatics on 2006-08-15 20:17:35 as along with 1 person and 1 group cdallett Bioinformatics
	Closed loops of nearly standard size: common basic element of protein structure. [My Copy] FEBS Lett, Vol. 466, No. 2-3. (28 January 2000), pp. 283-286. by I. N. Berezovsky, A. Y. Grosberg, E. N. Trifonov posted to indels loop protein_structure by ana to the group structural_bioinformatics on 2006-08-15 20:13:47 as along with 1 group Bioinformatics
	Molecular dissection of the inhibitor binding pocket of mitotic kinesin Eg5 reveals mutants that confer resistance to antimitotic agents [My Copy] Journal Of Molecular Biology, Vol. 360, No. 2. (7 July 2006), pp. 360-376. by Sebastien Brier, David Lemaire, Salvatore Debonis, Eric Forest, Frank Kozielski posted to drug_design eg5 inhibitor_design kinesin molecular_motors monastrol protein_dynamics protein_sequence protein_structure by barry to the group structural_bioinformatics on 2006-07-24 19:02:13 as along with 1 group Bioinformatics

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protein_structure	400
molecular_motors	173
kinesin	123
review	117
structure_comparison	116
protein_dynamics	105
protein_sequence	99
protein_evolution	78
md_simulation	64
protein_protein	63
bioinf_methods	61
protein_design	45
jcsg	42
cytoskeleton	41
sequence_comparison	39
structure_alignment	39
tubulin	38
new	37
protein_folding	36
allosteric	32
electrostatics	32
nma	32
myosin	31
comparative_genomics	29
interaction_hierarchy	29
snps	28
pca	27
ctbp	26
dynein	26
structural_bioinformatics	26
evolution	25
secondary-structure	25
virulence_factor	24
eg5	23
structure_classification	23
structure_prediction	23
split-barrel	21
disease-associated	20
docking	20
function-prediction	20
motor_model	20
structure_flexible	20
bd_simulation	19
contact_maps	19
protein_function	19
folding	18
monastrol	18
indels	17
clustering	16
drug_design	16
hgt	16
networks	16
project	16
streptococcus	16
correlated_mutations	15
fold_space	15
web_server	15
algorithms	14
artificial_life	14
benchmark	14
complex_systems	14
domain_motions	14
kinases	14
stability	14
active-site	13
adaptive_computation	13
ant_colony_systems	13
collective_computing	13
collective_intelligence	13
collective_systems	13
distributed_computing	13
minimal_genome	13
phylogeny	13
protein_interaction	13
protein_universe	13
stigmergy	13
structural_genomics	13
structure	13
swarm_intelligence	13
artificial_intelligence	12
bioinformatics	12
nmr	12
pattern_recognition	12
protein	12
scop-b-45-1-1	12
self-organization	12
structure_superposition	12
essential_genes	11
malaria	11
prediction	11
protein_ligand	11
protein-stability	11
beta-strand	10
conservation	10
genetic_algorithms	10
g_proteins	10
hbond	10
molecular_mimicry	10
ras	10
sequence_alignment	10
target_selection	10
alpha-helix	9
genome_evolution	9
protein-families	9
sequence_structure	9
alphabeta	8
comparative_modeling	8
core_structure	8
correlated_motions	8
function_prediction	8
gotit	8
homology_analogy	8
image_processing	8
motifs	8
ntpases	8
p-loop	8
classification	7
coarse_grain	7
comparative_model	7
contacts	7
dehydron	7
evolutionary_computation	7
hydrogen_bonding	7
image_analysis	7
loops	7
metagenomics	7
mitosis	7
sequence-structure	7
structure-based	7
algorithm	6
binding	6
cancer	6
cargo_attachment	6
cell_cycle_inhibitors	6
core_genome	6
database	6
data-mining	6
domains	6
free_energy	6
function_evolution	6
genome-wide	6
ion_channels	6
mine	6
multiple_structure_comparison	6
orthology	6
polar	6
protein_packing	6
small_world	6
statistical_coupling_analysis	6
statistics	6
structure-analysis	6
structure_core	6
torsion_angles	6
amino-acid-propensities	5
book	5
buried	5
contact_order	5
core_residues	5
distance_matrices	5
hydrogen-bond	5
inhibitor_design	5
molecular_dynamics	5
nachr	5
packing_density	5
power-law	5
protein_fragments	5
protein_stability	5
publications	5
r	5
solvent	5
surface	5
swarms	5
aaa	4
adaptive_algorithms	4
conformation	4
contact_prediction	4
data_integration	4
dna_structure	4
family-size	4
flexible_structure_alignment	4
gene_finding	4
image_classification	4
local_structure_similarity	4
model_refinement	4
mts	4
multiple_sequence_alignment	4
myovi	4
nucleosome	4
optimization	4
pdz	4
proj_assembly	4
promoter_identification	4
protein-function	4
replica_exchange	4
scop-b-45-1-1-pre	4
score	4
server	4
s_h	4
sporulation	4
adh	3
alignment	3
barrel	3
career	3
charged	3
complex	3
complexes	3
contact-map	3
cryo_em	3
disorder	3
dynamic_optimization	3
entropy	3
evolutionary-computation	3
gene_duplication	3
general	3
genomic_context	3
human_genetic_diversity	3
ion_pairs	3
kif1a	3
kin13	3
metabolomics	3
microarray	3
modelling	3
multiple_structure_alignment	3
myov	3
nadp	3
ncd	3
neofunctionalization	3
programming	3
propensities	3
ramachandran	3
recognition	3
residue_annotation	3
sca	3
scop-b-45-1-2	3
segmentation	3
selection	3
smd	3
solvation	3
stochastic_process	3
structure-clasification	3
superfunnel	3
swi-swii	3
tim-barrel	3
topology	3
1q5x	2
accessible	2
active_site	2
advice	2
aggregation	2
allostery	2
alzheimers	2
bayesian_classifiers	2
beta_sheet	2
biological	2
burial	2
capri	2
cath	2
celegans	2
centrality	2
chromatin	2
coarse-grained	2
conformational_selection	2
core	2
crohns_disease	2
crystalization	2
directed_evolution	2
dna	2
drug-designing	2
drug_discovery	2
drug-target	2
dynamic_environments	2
em	2
flavoenzymes	2
folding_nucleation	2
folds	2
fret-fiona	2
genome_sequence	2
globin	2
gpcr	2
graph	2
graph_theory	2
hapmap	2
hmm	2
homing-endonuclease	2
interaction_maps	2
interface	2
intrusion-detection-systems	2
kin14_kar3	2
kinetics	2
kini	2
ksca	2
level	2
linkers	2
local_interaction	2
loop	2
loop-strand	2
mathematical_morphology	2
membrane_proteins	2
molecular	2
motor_mode	2
msa	2
multi-domain	2
neoteny	2
neural_networks	2
neutral-networks	2
ntp	2
nucleotide_analogues	2
pathogenicity_island	2
pathway-genome_annotation	2
ph	2
phylogenetics	2
pmf	2
protein_disorder	2
protein_dna	2
protein_expression	2
protein-ligand	2
protein_moonlighting	2
protein-protein	2
protein-structure	2
protonation	2
pxdls	2
remote_homology	2
ribosome	2
rnasee_inhibitor	2
robustness	2
sampling	2
sas	2
scop-b-43-4	2
secondary_structure	2
secondary-structure-assignment	2
self-regulated	2
self-regulated_swarms	2
sequence-alignment	2
simulation	2
stabilization-centers	2
structural-class	2
structure_fragments	2
structure_refinement	2
taxonomy	2
tertiary-structure	2
time_series_analysis	2
turn	2
ubiquitination	2
water-mediated_contacts	2
abeta1-42	1
accelerated_md	1
accesible	1
achr	1
actin	1
adaptive_evolution	1
adatptive_computation	1
adk	1
afp	1
aging	1
anticancer	1
aromatic	1
artficial_life	1
asn	1
asp	1
background-creation	1
bacteriorhodopsin	1
base_composition	1
beta_flexibility	1
beta-hairpin	1
blocks	1
book2get	1
bpti	1
brownian_dynamics	1
candidate_gene	1
catalytic_mechanism	1
cavities	1
centromere	1
chameleon	1
chromokinesin	1
cisplatin	1
cis_trans	1
classic	1
clipx	1
cloud_computing	1
cnv	1
codon_bias	1
cognitive_maps	1
coiled_coil	1
compensatory	1
competition	1
complementary	1
complex-diseases	1
complexity	1
computer_science	1
conformational_search	1
conserved	1
context	1
convergent_evolution	1
correlation	1
cracking	1
crescendo	1
crystallography	1
crystal_packing	1
daf-16	1
daf-2	1
databases	1
data-integration	1
data_mining	1
dataset	1
dcm	1
ddm	1
decision_trees	1
delaunay	1
design	1
desolvation	1
detection	1
diffusion	1
discussion_free_energy	1
dna-binding	1
dna_motor	1
docking_refinement	1
domain_swapping	1
doublecortin	1
drug	1
drug-discovery	1
dynamic	1
dynamic_programming	1
eef	1
ef-g	1
ef-tu	1
electrostatic	1
embl	1
energy	1
ensemble	1
epigenetics	1
essay	1
evolutionary_strategies	1
evolutionary_trace	1
expression	1
f1atpase	1
fad	1
family_analysis	1
fdh	1
ferredoxin-reductase-fad-binding	1
ferrodoxin-reductase-fad-binding	1
filtering	1
flagella	1
flagellar_motor	1
flexibility	1
flexible	1
flu	1
fold	1
fold-recognition	1
for_ana	1
force_field	1
forecasting	1
fourier	1
ftsz	1
function	1
functional	1
gdh	1
gene_ontology	1
genetic	1
genetic-algorithms	1
genetic-programming	1
genome	1
genome_size	1
global	1
glycerol_kinase	1
go_model	1
gpus	1
harmonics	1
hinge_bend	1
histone	1
hnh	1
hoh	1
hot_spots	1
hsf-1	1
hsp70	1
hydrogen_bonding_networks	1
hydrogen-bonds	1
hydrophobic	1
hydrophobic_effect	1
image	1
image_filtering	1
immunoglobulin	1
imp_dehydrogenase	1
implicit	1
implicit_memory	1
interaction	1
ion_channel	1
journal_club	1
kar3	1
kin8	1
kinesin_neck	1
kin_loop5	1
kin-mtl	1
kogs	1
ldh	1
local-interactions	1
loop_modeling	1
low-complexity_regions	1
luca	1
machine-learning	1
mcak	1
mdh	1
memory	1
metadynamics	1
methods	1
microarrays	1
micro-rna	1
mismatch-repair	1
mm-pbsa	1
modeling	1
modes	1
motor_cargo	1
multi-expression-programming	1
multiscale	1
mutagenesis	1
mutagenisis	1
mutants	1
nad	1
nadh	1
ncbi	1
nearest_neighbor_classification	1
neural-networks	1
neutral	1
noncoding	1
nonconvex	1
normal	1
orfan	1
oxaliplatin	1
pattern-recognition	1
pb	1
pdb	1
pdb-1axj	1
pdb-1ci0	1
pdb-1dnl	1
pdb-1eje	1
pdb-1flm	1
pdb-1g76	1
pdb-1g77	1
pdb-1g78	1
pdb-1g79	1
pdb-1i0r	1
pdb-1i0s	1
pdb-1jnw	1
pdb-1nrg	1
pdb-1qtj	1
pdb-1rz0	1
pdb-1rz1	1
pdb-1t9m	1
pdb-1ty9	1
pdb-1w3o	1
pdb-1w3p	1
pdb-1w3q	1
pdb-1w3r	1
pdb-1w9a	1
pdb-1wv4	1
pdb-1xhn	1
pdb-1xxo	1
pdb-1y30	1
pdb-1ywu	1
pdb-2a2j	1
pdb-2aq6	1
pdb-2asf	1
pes	1
pgdh	1
phd	1
phylogenomics	1
pi	1
pka	1
potential	1
ppi	1
prion	1
processing	1
proj_disocons	1
proj_interprets	1
proline	1
promoter	1
promoter_finding	1
protein_annotation	1
protein-flexibility	1
protein-peptide	1
protein_strcture	1
protein-thermostability	1
pseudogene	1
ptms	1
qm	1
qm_mm	1
rabkinesin	1
reaction_speed	1
regions	1
regression	1
remodeling	1
repeats	1
rraa	1
sarig	1
scop-b-45	1
scop-b-45-2	1
scoring_matrix	1
sequence_conservation	1
sequence_motif	1
ser	1
set	1
sets	1
shape	1
siginal_transduction	1
similarity	1
smallrna	1
snp	1
software_development	1
species_evolution	1
spherical	1
splines	1
spo0a	1
stock-market	1
structural_enviroment	1
structural_prediction	1
structure_complexes	1
structure_determination	1
structure_domain	1
structure_function	1
structure_invariant	1
structure_uncertainty	1
student	1
subcellular_localization	1
subfamily	1
sub-family	1
subfunctionalization	1
superamolecular	1
supersecondary_library	1
svm	1
synonymous	1
systems	1
systems_biology	1
test	1
thik	1
thr	1
threading	1
thz	1
titration	1
tools	1
torsion	1
transcription	1
transcription_factor	1
transitions	1
transition_state	1
transmembrane	1
tree_of_life	1
tyrosine_phosphatases	1
ubiqutin	1
umbrella	1
visualization	1
web-server	1
weibull_function	1
weight	1
wireing_digrams	1

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