Group: structural_bioinformatics - with tag allosteric [32 articles] Export

Recent papers posted by members of the structural_bioinformatics group with tag allosteric

	The origin of allosteric functional modulation: multiple pre-existing pathways. [My Copy] Structure (London, England : 1993), Vol. 17, No. 8. (12 August 2009), pp. 1042-1050. by Antonio del Sol, Chung-Jung J. Tsai, Buyong Ma, Ruth Nussinov posted to review allosteric by barry to the group structural_bioinformatics on 2009-08-17 23:19:29 as along with 4 people and 1 group ubcg08l higueruelo pablocarb okapi McCammon
	Frequency-resolved communication maps for proteins and other nanoscale materials [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195101. by David M. Leitner posted to allosteric by barry to the group structural_bioinformatics on 2009-05-21 04:06:23 as along with 2 people and 2 groups biblioteca_babel sobolevnrm McCammon baker-group
	Dynamic Dysfunction in Dihydrofolate Reductase Results from Antifolate Drug Binding: Modulation of Dynamics within a Structural State [My Copy] Structure, Vol. 17, No. 3. (11 March 2009), pp. 386-394. by Randall V. Mauldin, Mary J. Carroll, Andrew L. Lee posted to allosteric nmr protein_ligand by barry to the group structural_bioinformatics on 2009-04-23 03:06:51 as along with 1 person and 1 group ae1054 McCammon
	Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms. [My Copy] Molecular bioSystems, Vol. 5, No. 3. (March 2009), pp. 207-216. by C. J. Tsai, A. Del Sol, R. Nussinov posted to allosteric review by barry to the group structural_bioinformatics on 2009-03-08 02:37:43 as along with 4 people and 2 groups anuragsethi flbarroso sobolevnrm higueruelo McCammon baker-group
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted to allosteric networks protein_dynamics by barry to the group structural_bioinformatics on 2009-02-20 19:17:41 as along with 9 people and 2 groups anuragsethi skywalkerus02 sobolevnrm pablocarb AngelB eallain allmensch gane5h apaydin baker-group McCammon
	Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages. [My Copy] Genome biology, Vol. 8, No. 5. (25 May 2007), R92. by Antonio Del Sol, Marcos J. Araúzo-Bravo, Dolors Amoros, Ruth Nussinov posted to allosteric networks by barry to the group structural_bioinformatics on 2009-02-09 18:27:22 as along with 3 people and 1 group bicko choonpeng echcram Bioinformatics
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to allosteric protein_dynamics by barry to the group structural_bioinformatics on 2008-10-27 22:23:54 as along with 8 people and 1 group oteri bmduggan xdeupi okapi aqeel raik ruvido zwang McCammon
	Surface Sites for Engineering Allosteric Control in Proteins [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442. by Jeeyeon Lee, Madhusudan Natarajan, Vishal C. Nashine, et al.Michael Socolich, Tina Vo, William P. Russ, Stephen J. Benkovic, Rama Ranganathan posted to allosteric correlated_mutations protein_design sca by barry to the group structural_bioinformatics on 2008-10-17 03:06:04 as along with 7 people and 3 groups sobolevnrm jbhiatt lflorez cactus marck i000 paulschlesinger baker-group McCammon Bioinformatics
	Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 37. (16 September 2008), pp. 13829-13834. by S. M. Sullivan, T. Holyoak posted to allosteric protein_dynamics protein_structure by barry to the group structural_bioinformatics on 2008-10-02 18:34:06 as along with 1 person and 1 group TonyIvetac McCammon
	Allostery: an illustrated definition for the 'second secret of life' [My Copy] Trends in biochemical sciences (13 August 2008) by Aron W W. Fenton posted to allosteric review by barry to the group structural_bioinformatics on 2008-08-23 20:39:33 as along with 1 person and 1 group ruvido McCammon
	Molecular Dynamics Simulation of the Escherichia coli NikR Protein: Equilibrium Conformational Fluctuations Reveal Interdomain Allosteric Communication Pathways [My Copy] Journal of Molecular Biology, Vol. 378, No. 5. (16 May 2008), pp. 1155-1173. by Michael J. Bradley, Peter T. Chivers, Nathan A. Baker posted to allosteric md_simulation by barry to the group structural_bioinformatics on 2008-04-27 22:02:29 as along with 2 people and 1 group sobolevnrm skoddet baker-group
	Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play. [My Copy] J Mol Biol (29 February 2008) by Chung-Jung J. Tsai, Antonio Del Sol, Ruth Nussinov posted to allosteric protein_dynamics protein_structure review by barry to the group structural_bioinformatics on 2008-03-31 18:11:48 as along with 7 people and 2 groups pablocarb choonpeng cactus sobolevnrm CameronNeylon higueruelo cchang McCammon Chang group
	Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 17, No. 6. (December 2007), pp. 633-640. by Ivet Bahar, Chakra Chennubhotla, Dror Tobi posted to allosteric protein_dynamics protein_structure review by barry to the group structural_bioinformatics on 2007-12-04 22:56:25 as along with 10 people and 3 groups allmensch jrperillaj aqeel ruvido cactus sobolevnrm jennifermbui higueruelo LamBras jmccammon Bioinformatics baker-group McCammon
	Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 47. (20 November 2007), pp. 18496-18501. by Karunesh Arora, Charles L. Brooks posted to allosteric kinases md_simulation by barry to the group structural_bioinformatics on 2007-11-27 23:23:59 as along with 7 people and 1 group xdeupi jrperillaj allmensch cactus sobolevnrm jlh64 karunesh baker-group
	Predicting Allosteric Communication in Myosin via a Pathway ofConserved Residues [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Susan Tang, Jung-Chi Liao, Alexander R. Dunn, Russ B. Altman, James A. Spudich, Jeanette P. Schmidt posted to allosteric molecular_motors myosin protein_sequence protein_structure sequence_comparison by barry to the group structural_bioinformatics on 2007-10-31 21:53:37 as along with 5 people and 1 group choonpeng cactus sobolevnrm jlh64 melting baker-group
	Signal Propagation in Proteins and Relation to Equilibrium Fluctuations [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e172. by Chakra Chennubhotla, Ivet Bahar posted to allosteric correlated_motions nma protein_dynamics protein_structure time_series_analysis by barry to the group structural_bioinformatics on 2007-09-22 23:29:36 as along with 1 person and 1 group apaydin Bioinformatics
	Intrinsic disorder as a mechanism to optimize allosteric coupling in proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 20. (15 May 2007), pp. 8311-8315. by Vincent J. Hilser, E. Brad Thompson posted to protein_structure protein_protein protein_dynamics disorder allosteric by barry to the group structural_bioinformatics on 2007-05-25 01:36:39 as along with 6 people and 2 groups guhjy apaydin choonpeng cursonivel1 cactus allmensch Bioinformatics cursonivel1
	Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 2. (2006), pp. 347-361. by Kim Sharp, John J. Skinner posted to protein_structure protein_dynamics md_simulation bioinf_methods allosteric by barry to the group structural_bioinformatics on 2007-01-30 20:09:59 as along with 3 people and 2 groups lna choonpeng sobolevnrm Bioinformatics baker-group
	Conservation and specialization in PAS domain dynamics. [My Copy] Protein Eng Des Sel, Vol. 18, No. 3. (March 2005), pp. 127-137. by A. Pandini, L. Bonati posted to protein_dynamics pca allosteric by barry to the group structural_bioinformatics on 2007-01-19 22:06:49 as along with 1 group Bioinformatics
	PAS domains. Common structure and common flexibility. [My Copy] J Biol Chem, Vol. 278, No. 20. (16 May 2003), pp. 18434-18439. by J. Vreede, M. A. van der Horst, K. J. Hellingwerf, W. Crielaard, D. M. van Aalten posted to protein_dynamics allosteric by barry to the group structural_bioinformatics on 2007-01-19 21:58:55 as along with 1 group Bioinformatics
	Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins. [My Copy] Science, Vol. 247, No. 4945. (23 February 1990), pp. 939-945. by M. V. Milburn, L. Tong, A. M. deVos, et al.A. Brünger, Z. Yamaizumi, S. Nishimura, S. H. Kim posted to review ras p-loop ntp g_proteins allosteric by barry to the group structural_bioinformatics on 2007-01-16 20:21:14 as along with 4 people and 1 group Einat laurabailey allmensch gloria Bioinformatics
	The structure of Ras protein: a model for a universal molecular switch [My Copy] Trends in Biochemical Sciences, Vol. 16 (1991), pp. 382-387. by Alfred Wittinghofer, Emil F. Pal posted to review ras p-loop ntp g_proteins allosteric by barry to the group structural_bioinformatics on 2007-01-16 20:13:08 as along with 1 group Bioinformatics
	Evaluation of Energetic and Dynamic Coupling Networks in a PDZ Domain Protein [My Copy] Journal of Molecular Biology, Vol. 364, No. 3. (1 December 2006), pp. 337-351. by Ernesto J. Fuentes, Steven A. Gilmore, Randall V. Mauldin, Andrew L. Lee posted to allosteric pdz protein_dynamics protein_structure by barry to the group structural_bioinformatics on 2006-11-15 19:16:56 as along with 2 people and 1 group lna choonpeng Bioinformatics
	Crystal structure of the Awd nucleotide diphosphate kinase from Drosophila. [My Copy] Structure, Vol. 1, No. 4. (15 December 1993), pp. 283-293. by M. Chiadmi, S. Moréra, I. Lascu, et al.C. Dumas, G. Le Bras, M. Véron, J. Janin posted to allosteric by ana to the group structural_bioinformatics on 2006-03-09 21:53:03 as along with 1 group Bioinformatics
	Allosteric Regulation of Hsp70 Chaperones by a Proline Switch [My Copy] Molecular Cell, Vol. 21, No. 3. (3 February 2006), pp. 359-367. by Markus Vogel, Bernd Bukau, Matthias P. Mayer posted to allosteric hsp70 protein_design protein_dynamics protein_structure by barry to the group structural_bioinformatics on 2006-02-03 02:52:39 as along with 1 person and 2 groups pdelosri Bioinformatics EPFL_SB_ITP_LBS
	Intramolecular Signaling Pathways Revealed by Modeling Anisotropic Thermal Diffusion [My Copy] Journal of Molecular Biology, Vol. 351, No. 2. (12 August 2005), pp. 345-354. by Nobuyuki Ota, David A. Agard posted to allosteric contacts correlated_motions correlated_mutations md_simulation by barry to the group structural_bioinformatics on 2006-01-24 18:24:55 as along with 3 people and 1 group pansapiens lna choonpeng Bioinformatics
	The Allosteric Mechanism of Yeast Chorismate Mutase: A Dynamic Analysis [My Copy] Journal of Molecular Biology, Vol. 356, No. 1. (10 February 2006), pp. 237-247. by Yifei Kong, Jianpeng Ma, Martin Karplus, William N. Lipscomb posted to allosteric md_simulation protein_structure by barry to the group structural_bioinformatics on 2006-01-16 20:34:23 as along with 2 people and 1 group ruvido higueruelo Bioinformatics
	Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 673-692. by A. F. Neuwald, N. Kannan, A. Poleksic, N. Hata, J. S. Liu posted to allosteric bioinf_methods contacts core_residues g_proteins ntpases p-loop protein_design protein_dynamics protein_evolution protein_sequence protein_structure by barry to the group structural_bioinformatics on 2006-01-07 03:57:13 as along with 1 group Bioinformatics
	A Pathway for the Transmission of Allosteric Signals in the Ribosome through a Network of RNA Tertiary Interactions [My Copy] Journal of Molecular Biology, Vol. 355, No. 5. (3 February 2006), pp. 1014-1025. by Yuen-Ling Chan, John Dresios, Ira G. Wool posted to allosteric ribosome by barry to the group structural_bioinformatics on 2006-01-02 19:17:14 as along with 1 group Bioinformatics
	Conformational Equilibria and Free Energy Profiles for the Allosteric Transition of the Ribose-binding Protein [My Copy] Journal of Molecular Biology, Vol. 353, No. 1. (14 October 2005), pp. 196-210. by Krishna P. Ravindranathan, Emilio Gallicchio, Ronald M. Levy posted to allosteric free_energy protein_dynamics sampling umbrella by barry to the group structural_bioinformatics on 2005-09-24 00:38:20 as along with 1 group Bioinformatics
	Molecular dynamics simulations of evolved collective motions of atoms in the myosin motor domain upon perturbation of the ATPase pocket [My Copy] Biophysical Chemistry, Vol. 115, No. 1. (1 May 2005), pp. 77-85. by Tatsuyuki Kawakubo, Okimasa Okada, Tomoyuki Minami posted to allosteric md_simulation myosin pca protein_dynamics by barry to the group structural_bioinformatics on 2005-09-20 18:41:52 as along with 1 person and 1 group julien_lv Bioinformatics
	Long-range allosteric control of cytoplasmic dynein ATPase activity by the stalk and C-terminal domains. [My Copy] J Biol Chem (18 July 2005) by Peter Höök, Atsushi Mikami, Beth Shafer, Brian T T. Chait, Steven S S. Rosenfeld, Richard B B. Vallee posted to allosteric dynein molecular_motors by barry to the group structural_bioinformatics on 2005-09-19 19:45:30 as along with 1 group Bioinformatics

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protein_dynamics	47
protein_structure	31
review	31
md_simulation	17
kinases	13
xf	13
ppi	10
protein_design	10
2007	9
g_proteins	9
p-loop	9
flexibility	8
sm	8
2009	7
bioinformatics	7
biophysics	7
correlated_mutations	7
nma	7
nmr	7
bioinf_methods	6
contacts	6
correlated_motions	6
networks	6
ntp	6
pca	6
ras	6
statistical_potentials	6
2006	5
2008	5
dynamics	5
hsp70	5
mgcb	5
molecular_motors	5
myosin	5
protein_sequence	5
sca	5
disorder	4
pdz	4
protein	4
core_residues	3
diabetes	3
dynein	3
free_energy	3
kinetics	3
ntpases	3
protein_evolution	3
protein_ligand	3
protein_protein	3
ribosome	3
sampling	3
time_series_analysis	3
umbrella	3
2004	2
2005	2
cancer	2
cbf	2
control	2
kinase	2
mglur5	2
model	2
receptor	2
sequence_comparison	2
structure	2
19f	1
ampa	1
brucei	1
catalytic_domain	1
computation	1
conformation	1
correlated_mutation	1
coupling	1
cracking	1
cyclothiazide	1
dna	1
efficacy	1
excitation	1
free	1
glu	1
gpcr	1
hgh	1
inos	1
insulin	1
interface	1
large-scale	1
ldh	1
local	1
long	1
mediate	1
msa	1
mutant-design	1
range	1
rbp4	1
reguratory_domain	1
residues	1
ryr	1
sar	1
signaling	1
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Group: structural_bioinformatics - with tag allosteric [32 articles] Export

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