Group: structural_bioinformatics - with tag docking [20 articles] Export

Recent papers posted by members of the structural_bioinformatics group with tag docking

	Mapping the sequence mutations of the 2009 H1N1 influenza A virus neuraminidase relative to drug and antibody binding sites [My Copy] Biology Direct, Vol. 4 (20 May 2009), 18. by Sebastian, Frank Eisenhaber posted to docking drug-designing drug-target by kshameer to the group structural_bioinformatics on 2009-05-21 15:07:12 as along with 2 people friendpine zwang
	Structural Mining: Self-Consistent Design on Flexible Protein−Peptide Docking and Transferable Binding Affinity Potential [My Copy] Journal of the American Chemical Society, Vol. 126, No. 27. (1 July 2004), pp. 8515-8528. by Zhijie Liu, Brian N. Dominy, Eugene I. Shakhnovich posted to docking protein-peptide by kshameer to the group structural_bioinformatics on 2009-03-31 11:40:14 as
	Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles [My Copy] Journal of Molecular Biology, Vol. 381, No. 4. (12 September 2008), pp. 1068-1087. by S. Chaudhury, J. Gray posted to conformational_selection docking protein_protein by barry to the group structural_bioinformatics on 2008-12-02 18:12:27 as along with 1 group McCammon
	Principles of flexible protein-protein docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 73, No. 2. (2008), pp. 271-289. by Nelly Andrusier, Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson posted to docking flexible protein review by csrocha to the group structural_bioinformatics on 2008-11-10 18:05:05 as along with 3 people bicko aqeel LamBras
	Protein docking using spherical polar Fourier correlations. [My Copy] Proteins, Vol. 39, No. 2. (1 May 2000), pp. 178-194. by D. W. Ritchie, G. J. Kemp posted to complementary correlation docking electrostatic fourier harmonics polar protein shape spherical by csrocha to the group structural_bioinformatics on 2008-10-13 14:22:43 as along with 3 people martainn tjimenez bicko
	Docking and scoring protein complexes: CAPRI 3rd Edition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Marc F. Lensink, Raúl Méndez, Shoshana J. Wodak posted to benchmark capri docking by csrocha to the group structural_bioinformatics on 2008-10-10 15:14:58 as along with 9 people mgomes flbarroso bicko ruvido cjeans carlescorbi yalexeev middledomain timg
	Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 242-249. by S. J. Wodak, R. Méndez posted to biological capri docking interaction prediction protein by csrocha to the group structural_bioinformatics on 2008-10-08 05:42:28 as along with 3 people nachtalp ffranca ruvido
	Prediction of physical protein–protein interactions [My Copy] Physical Biology, Vol. 2, No. 2. (June 2005), S1. by András Szilágyi, Vera Grimm, Adrián K. Arakaki, Jeffrey Skolnick posted to docking prediction protein by csrocha to the group structural_bioinformatics on 2008-10-08 05:34:01 as along with 2 people and 1 group lfriedl ruvido kdl
	Dissecting protein-protein recognition sites [My Copy] Proteins: Structure, Function, and Genetics, Vol. 47, No. 3. (2002), pp. 334-343. by Pinak Chakrabarti, Joël Janin posted to biological docking interface protein by csrocha to the group structural_bioinformatics on 2008-10-08 04:34:14 as along with 1 person dfgreen
	Evaluation of an inverse molecular design algorithm in a model binding site [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by David J. Huggins, Michael D. Altman, Bruce Tidor posted to docking by barry to the group structural_bioinformatics on 2008-10-05 18:59:32 as along with 3 people and 1 group dfgreen mijam middledomain McCammon
	Flexible ligand docking to multiple receptor conformations: a practical alternative. [My Copy] Current opinion in structural biology, Vol. 18, No. 2. (April 2008), pp. 178-184. by M. Totrov, R. Abagyan posted to docking md_simulation review by barry to the group structural_bioinformatics on 2008-10-02 19:48:14 as along with 3 people and 2 groups klexa oteri aqeel McCammon Bioinformatics
	Structural modeling of protein interactions by analogy: application to PSD-95. [My Copy] PLoS Comput Biol, Vol. 2, No. 11. (10 November 2006) by D. Korkin, F. P. Davis, F. Alber, et al.T. Luong, M. Y. Shen, V. Lucic, M. B. Kennedy, A. Sali posted to algorithm binding complexes docking modelling proj_assembly structure by chad_davis to the group structural_bioinformatics on 2008-05-28 10:32:13 as along with 1 person bicko
	An iterative knowledge-based scoring function for protein-protein recognition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Sheng-You Huang, Xiaoqin Zou posted to algorithms binding competition docking phd statistics structure by chad_davis to the group structural_bioinformatics on 2008-02-05 09:54:41 as along with 1 person and 1 group whitead Jiang Research Group
	Assessing predictions of protein-protein interaction: the CAPRI experiment. [My Copy] Protein Sci, Vol. 14, No. 2. (February 2005), pp. 278-283. by J. Janin posted to docking protein_protein by barry to the group structural_bioinformatics on 2007-09-27 19:26:18 as along with 5 people mkotlyar csrocha bicko ima drastic
	Representing receptor flexibility in ligand docking through relevant normal modes. [My Copy] J Am Chem Soc, Vol. 127, No. 26. (6 July 2005), pp. 9632-9640. by C. N. Cavasotto, J. A. Kovacs, R. A. Abagyan posted to docking nma by barry to the group structural_bioinformatics on 2007-09-27 19:13:39 as along with 6 people and 2 groups BragilMassoud apaydin aqeel yongzhao kazemi LamBras Bioinformatics TSRI_MGL
	Protein-Protein Docking with Backbone Flexibility [My Copy] Journal of Molecular Biology, Vol. 373, No. 2. (19 October 2007), pp. 503-519. by Chu Wang, Philip Bradley, David Baker posted to docking protein_protein by barry to the group structural_bioinformatics on 2007-09-27 17:40:34 as along with 6 people and 1 group mijam kgutwin csrocha jwm xdeupi Ema Bioinformatics
	Protein Flexibility and Mobility in Structure-Based Drug Design [My Copy] Frontiers in Drug Design & Discovery: Structure-Based Drug Design in the 21st Century (March 2007), pp. 455-476. by Aqeel Ahmed, Sina Kazemi, Holger Gohlke posted to review protein_structure protein_ligand protein_dynamics drug_design docking by barry to the group structural_bioinformatics on 2007-08-13 19:47:46 as along with 2 people and 1 group fl aqeel Bioinformatics
	Predicting Absolute Ligand Binding Free Energies to a Simple Model Site [My Copy] Journal of Molecular Biology, Vol. 371, No. 4. (24 August 2007), pp. 1118-1134. by David L. Mobley, Alan P. Graves, John D. Chodera, Andrea C. Mcreynolds, Brian K. Shoichet, Ken A. Dill posted to protein_structure protein_ligand docking by barry to the group structural_bioinformatics on 2007-08-06 18:14:06 as along with 6 people and 2 groups allmensch oteri insilico daevans superpyrin dmobley Bioinformatics Computer Aided Drug Design
	A new method for estimating the importance of hydrophobic groups in the binding site of a protein. [My Copy] J Med Chem, Vol. 48, No. 4. (24 February 2005), pp. 1069-1078. by M. D. Kelly, R. L. Mancera posted to protein_structure protein_ligand hydrophobic docking bioinf_methods by barry to the group structural_bioinformatics on 2007-07-19 18:29:38 as along with 3 people and 1 group nickolay blackbart ladab Bioinformatics
	The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme. [My Copy] Biopolymers, Vol. 68, No. 1. (January 2003), pp. 47-62. by J. H. Lin, A. L. Perryman, J. R. Schames, J. A. McCammon posted to bioinf_methods docking drug_design md_simulation protein_dynamics protein_structure by barry to the group structural_bioinformatics on 2006-09-07 20:06:11 as along with 5 people and 2 groups karinaecomp blackbart kazemi sobolevnrm LamBras Bioinformatics baker-group

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protein	156
review	108
screening	107
structure	96
drug	81
ligand	68
scoring	66
binding	56
flexibility	46
algorithms	40
protein-protein	34
drug_design	33
docking_prog	32
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energyfunctions	31
protein-ligand	31
protein_structure	30
ppi	29
virtual_screening	28
prediction	27
algorithm	26
modeling	25
bioinformatics	24
protein_ligand	22
affinity	21
autodock	21
flexible	20
nmr	20
modelling	19
docking_design	18
glide	18
gpcr	18
rna	18
complexes	17
pharmacology	17
flexible_protein	16
md	16
molecular	16
simulation	16
2009	15
induced_fit	15
function	14
homology	14
interface	14
ligands	14
pka	14
computational	13
gold	13
kinases	13
solvation	13
biology	12
complex	12
database	12
disease	12
flex	12
nma	12
protein_docking	12
score	12
virtual	12
design	11
flexx	11
fragments	11
hts	11
molecular_dynamics	11
qsar	11
software	11
2007	10
conformation	10
dna	10
dockingscore	10
dynamics	10
free_energy	10
hdock	10
potential_app	10
proj_assembly	10
sbdd	10
biophysics	9
drug-design	9
fragment	9
interactions	9
pharmacophore	9
receptor	9
structural_bioinformatics	9
1paper	8
benchmark	8
electrostatics	8
evolution	8
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programs	8
protein_dynamics	8
protein_protein	8
surflex	8
validation	8
virtualscreening	8
cheminformatics	7
dockingpose	7
ga	7
library	7
md_simulation	7

Group: structural_bioinformatics - with tag docking [20 articles] Export

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