Group: structural_bioinformatics - with tag function-prediction [20 articles] Export Sort

Recent papers posted by members of the structural_bioinformatics group with tag function-prediction

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	Automated Protein Subfamily Identification and Classification [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e160. by Duncan P. Brown, Nandini Krishnamurthy, Kimmen Sjölander posted to sub-family function-prediction by Einat to the group structural_bioinformatics on 2007-09-02 16:00:00 as along with 5 people djkt druvus cjeans mingzhi shung
	Automated discovery of functional generality of human gene expression programs. [My Copy] PLoS computational biology, Vol. 3, No. 8. (10 August 2007) by Georg K. Gerber, Robin D. Dowell, Tommi S. Jaakkola, David K. Gifford posted to function-prediction expression by Einat to the group structural_bioinformatics on 2007-09-02 15:56:58 as along with 3 people ptrobajo jfr sebastien_vigneau
	SNAP: predict effect of non-synonymous polymorphisms on function. [My Copy] Nucleic acids research, Vol. 35, No. 11. (28 June 2007), pp. 3823-3835. by Yana Bromberg, Burkhard Rost posted to snps function-prediction disease-associated by cat_worth to the group structural_bioinformatics on 2007-07-02 11:41:28 as along with 3 people daforerog benjaminsb guhjy
	Relating destabilizing regions to known functional sites in proteins. [My Copy] BMC bioinformatics, Vol. 8 (30 April 2007), 141. by Benoît H. Dessailly, Marc F. Lensink, Shoshana J. Wodak posted to protein-stability function-prediction by Einat to the group structural_bioinformatics on 2007-05-25 11:28:43 as along with 1 person and 1 group bdessailly Orengo Group Journal Picks
	How accurate and statistically robust are catalytic site predictions based on closeness centrality? [My Copy] BMC Bioinformatics, Vol. 8 (11 May 2007), 153. by Eric Chea, Dennis R. Livesay posted to function-prediction centrality by Einat to the group structural_bioinformatics on 2007-05-25 11:25:33 as along with 3 people pablocarb neils massivemayhem
	Improved prediction of critical residues for protein function based on network and phylogenetic analyses. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by B. Thibert, D. E. Bredesen, G. del Rio posted to protein_structure networks function-prediction evolution by Einat to the group structural_bioinformatics on 2007-05-25 11:24:23 as along with 3 people neils pansapiens sriram_s
	Deleterious SNP prediction: be mindful of your training data! [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 6. (15 March 2007), pp. 664-672. by Matthew A. Care, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead posted to stability snps function-prediction by cat_worth to the group structural_bioinformatics on 2007-05-21 12:29:37 as along with 2 people bicko massivemayhem
	An Evolutionary Trace Method Defines Binding Surfaces Common to Protein Families [My Copy] Journal of Molecular Biology, Vol. 257, No. 2. (29 March 1996), pp. 342-358. by O Lichtarge, posted to function-prediction evolutionary_trace by cat_worth to the group structural_bioinformatics on 2007-02-01 17:28:57 as along with 5 people ajv ramiro2k lna nickolay sriram_s
	Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information. [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2185-2190. by L. Bao, Y. Cui posted to structure-based snps function-prediction by cat_worth to the group structural_bioinformatics on 2007-01-22 14:48:30 as along with 4 people and 1 group chrn bicko caporaso massivemayhem biomedical-nlp
	Human non-synonymous SNPs: server and survey. [My Copy] Nucleic Acids Res, Vol. 30, No. 17. (1 September 2002), pp. 3894-3900. by V. Ramensky, P. Bork, S. Sunyaev posted to structure-based snps function-prediction disease-associated by cat_worth to the group structural_bioinformatics on 2007-01-22 11:39:40 as along with 4 people daforerog renewang chrn happy_manatee
	Distinguishing structural and functional restraints in evolution in order to identify interaction sites. [My Copy] J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1487-1504. by V. Chelliah, L. Chen, T. L. Blundell, S. C. Lovell posted to function-prediction crescendo by cat_worth to the group structural_bioinformatics on 2007-01-18 11:43:13 as along with 8 people chrn bicko rabio massivemayhem MaggieYe medic0747 cjeans zwang
	On the nature of cavities on protein surfaces: Application to the identification of drug-binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (13 February 2006), pp. 892-906. by Murad Nayal, Barry Honig posted to cavities function-prediction protein_structure by Einat to the group structural_bioinformatics on 2006-03-29 10:52:46 as along with 6 people ubcg08l iaolier BragilMassoud pansapiens tjimenez nickolay
	The relationship between protein structure and function: a comprehensive survey with application to the yeast genome. [My Copy] Journal of molecular biology, Vol. 288, No. 1. (23 April 1999), pp. 147-164. by H. Hegyi, M. Gerstein posted to function-prediction protein_structure by Einat to the group structural_bioinformatics on 2006-03-29 09:35:23 as along with 5 people pablocarb MarcoAlvarez eweaver tny siebertm
	Relation between structure and function of alpha/beta-proteins. [My Copy] Q Rev Biophys, Vol. 13, No. 3. (August 1980), pp. 317-338. by C. I. Brändeén posted to alphabeta function-prediction s_h by Einat to the group structural_bioinformatics on 2006-03-19 09:21:30 as along with 1 person laurabailey
	Effective function annotation through catalytic residue conservation. [My Copy] Proc Natl Acad Sci U S A (21 July 2005) by Richard A A. George, Ruth V V. Spriggs, Gail J J. Bartlett, et al.Alex Gutteridge, Malcolm W W. Macarthur, Craig T T. Porter, Bissan Al-Lazikani, Janet M M. Thornton, Mark B B. Swindells posted to active-site conservation function-prediction by Einat to the group structural_bioinformatics on 2005-10-24 11:38:00 as along with 5 people chrn alexg gbart tny bilab
	Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design. [My Copy] Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 5861-5867. by Gong Cheng, Bin Qian, Ram Samudrala, David Baker posted to active-site function-prediction by Einat to the group structural_bioinformatics on 2005-10-17 11:50:38 as along with 6 people and 2 groups bicko marcius alexg nickolay sriram_s ladab BioinfoCIPF SGU-CIPF
	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted to active-site contact-map evolution function-prediction by Einat to the group structural_bioinformatics on 2005-09-25 13:48:37 as along with 18 people and 5 groups krapnik mgomes qluo stevanspringer marcius eckart_bindewald analogAI dgront caporaso sriram_s choonpeng Haggan rabio mottonen zambujo mingzhi bethbromley ca3295 Marcotte_Lab FAB-lab biomedical-nlp BioinfoCIPF SGU-CIPF
	Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families. [My Copy] J Mol Biol, Vol. 347, No. 3. (1 April 2005), pp. 565-581. by J. W. Torrance, G. J. Bartlett, C. T. Porter, J. M. Thornton posted to active-site function-prediction by Einat to the group structural_bioinformatics on 2005-09-22 09:25:02 as along with 4 people chrn alexg gbart jwm
	Searching for functional sites in protein structures. [My Copy] Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 3-7. by Susan Jones, Janet M. Thornton posted to active-site function-prediction by Einat to the group structural_bioinformatics on 2005-09-22 09:17:49 as along with 7 people qluo BragilMassoud LeightonP chrn proteasome nickolay jwm
	Network Analysis of Protein Structures Identifies Functional Residues [My Copy] Journal of Molecular Biology, Vol. 344, No. 4. (03 December 2004), pp. 1135-1146. by Gil Amitai, Arye Shemesh, Einat Sitbon, et al.Maxim Shklar, Dvir Netanely, Ilya Venger, Shmuel Pietrokovski posted to contact-map function-prediction networks robustness sarig by Einat to the group structural_bioinformatics on 2005-09-22 09:12:07 as along with 8 people Diego_Prada chrn vavi bicko amitai sriram_s massivemayhem siebertm

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active-site	11
snps	10
protein-annotation	7
protein_structure	6
networks	5
structure-based	5
contact-map	4
disease-associated	4
evolution	4
protein	4
protein-function	4
review	4
enzymes	3
metagenomics	3
alphabeta	2
bioinformatics	2
cavities	2
centrality	2
conservation	2
crescendo	2
evolutionary_trace	2
expression	2
functional-genomics	2
mex	2
motif	2
motifs	2
msa-analysis	2
protein-stability	2
protein-structure	2
residue-conservation	2
robustness	2
s_h	2
sarig	2
sequence-based-function-prediction	2
stability	2
sub-family	2
0_function	1
algorithm	1
annotation-pipeline	1
binding-sites	1
comparative-genomics	1
correlated-mutations	1
database	1
ecology	1
entropy	1
enzyme-calling	1
enzyme-function	1
enzyme-promiscuity	1
function-annotation	1
gene-list	1
genomics	1
gpcr	1
high-throughput	1
hmm	1
machine-learning	1
metal-binding	1
mg-rast	1
pfam	1
phylogenetics	1
phylogenomics	1
post-translational-modification	1
protein-domain	1
rast	1
sequence-based	1
software	1
structural_alignment	1
structure	1
templates	1
toblog	1

Group: structural_bioinformatics - with tag function-prediction [20 articles] Export Sort

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