Group: structural_bioinformatics - with tag jcsg [42 articles] Export

Recent papers posted by members of the structural_bioinformatics group with tag jcsg

	Structural Evolution of the Protein Kinase-Like Superfamily. [My Copy] PLoS Comput Biol, Vol. 1, No. 5. (21 October 2005) by Eric D D. Scheeff, Philip E E. Bourne posted to protein_structure protein_sequence phylogenetics jcsg by ana to the group structural_bioinformatics on 2007-06-02 03:59:29 as along with 4 people and 1 group yuslinaz BragilMassoud anwazo renatomilani Bioinformatics
	Divergent evolution within protein superfolds inferred from profile-based phylogenetics. [My Copy] Journal of molecular biology, Vol. 354, No. 3. (2 December 2005), pp. 722-737. by Douglas L. Theobald, Deborah S. Wuttke posted to protein_structure protein_sequence phylogenetics jcsg by ana to the group structural_bioinformatics on 2007-06-02 03:54:22 as along with 7 people and 3 groups dfdong martainn cmura yuslinaz barry dlr caporaso Bioinformatics biomedical-nlp McCammon
	Protein families and TRIBES in genome sequence space. [My Copy] Nucleic Acids Res, Vol. 31, No. 15. (1 August 2003), pp. 4632-4638. by A. J. Enright, V. Kunin, C. A. Ouzounis posted to jcsg family-size by ana to the group structural_bioinformatics on 2007-05-22 01:51:20 as along with 1 person and 1 group tmmurali Bioinformatics
	Scaling law in sizes of protein sequence families: from super-families to orphan genes. [My Copy] Proteins, Vol. 51, No. 4. (1 June 2003), pp. 569-576. by R. Unger, S. Uliel, S. Havlin posted to jcsg family-size by ana to the group structural_bioinformatics on 2007-05-22 01:26:14 as along with 1 group Bioinformatics
	Protein structure and evolutionary history determine sequence space topology. [My Copy] Genome Res, Vol. 15, No. 3. (March 2005), pp. 385-392. by B. E. Shakhnovich, E. Deeds, C. Delisi, E. Shakhnovich posted to jcsg family-size by ana to the group structural_bioinformatics on 2007-05-21 23:56:45 as along with 1 person and 1 group bpb Bioinformatics
	Myriads of protein families, and still counting [My Copy] Genome Biology, Vol. 4, No. 2. (2003) by Victor Kunin, Ildefonso Cases, Anton Enright, Victor de Lorenzo, Christos Ouzounis posted to jcsg family-size by ana to the group structural_bioinformatics on 2007-05-21 23:43:57 as along with 1 group Bioinformatics
	Structural and Chemical Profiling of the Human Cytosolic Sulfotransferases [My Copy] PLoS Biology, Vol. 5, No. 5. (1 May 2007), e97. by Abdellah Allali-Hassani, Patricia W. Pan, Ludmila Dombrovski, et al.Rafael Najmanovich, Wolfram Tempel, Aiping Dong, Peter Loppnau, Fernando Martin, Janet Thonton, Aled M. Edwards, Alexey Bochkarev, Alexander N. Plotnikov, Masoud Vedadi, Cheryl H. Arrowsmith posted to structural_genomics jcsg family_analysis by ana to the group structural_bioinformatics on 2007-04-10 19:37:51 as along with 1 group Bioinformatics
	Disseminating structural genomics data to the public: from a data dump to an animated story. [My Copy] Trends Biochem Sci (4 January 2006) by Ruben Abagyan, Wen Hwa H. Lee, Eugene Raush, et al.Levon Budagyan, Maxim Totrov, Michael Sundstrom, Brian D D. Marsden posted to visualization structural_genomics jcsg by ana to the group structural_bioinformatics on 2007-04-05 03:30:16 as along with 1 person and 3 groups jwm Radiation_Damage Stressosome Bioinformatics
	Definitions of enzyme function for the structural genomics era. [My Copy] Curr Opin Chem Biol, Vol. 7, No. 2. (April 2003), pp. 230-237. by P. C. Babbitt posted to jcsg function_evolution by ana to the group structural_bioinformatics on 2007-03-28 04:12:07 as along with 1 person and 1 group blackbart Bioinformatics
	DIVERGENT EVOLUTION OF ENZYMATIC FUNCTION: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies [My Copy] Annual Review of Biochemistry, Vol. 70, No. 1. (2001), pp. 209-246. by John A. Gerlt, Patricia C. Babbitt posted to jcsg function_evolution by ana to the group structural_bioinformatics on 2007-03-28 03:45:13 as along with 4 people and 1 group mittinatten pablocarb tny robert Bioinformatics
	Definitions of enzyme function for the structural genomics era [My Copy] Current Opinion in Chemical Biology, Vol. 7, No. 2. (April 2003), pp. 230-237. by Patricia C. Babbitt posted to jcsg function_evolution by ana to the group structural_bioinformatics on 2007-03-28 03:42:41 as along with 2 people and 1 group eweaver tny Bioinformatics
	On the origin of enzymatic species [My Copy] Trends in Biochemical Sciences, Vol. 18, No. 10. (October 1993), pp. 372-376. by Gregory A. Petsko, George L. Kenyon, John A. Gerlt, Dagmar Ringe, John W. Kozarich posted to jcsg function_evolution by ana to the group structural_bioinformatics on 2007-03-28 03:42:24 as along with 1 group Bioinformatics
	Evolution of function in protein superfamilies, from a structural perspective [My Copy] Journal of Molecular Biology, Vol. 307, No. 4. (6 April 2001), pp. 1113-1143. by Annabel E. Todd, Christine A. Orengo, Janet M. Thornton posted to jcsg function_evolution by ana to the group structural_bioinformatics on 2007-03-28 03:16:48 as along with 10 people and 1 group ucbcjbm flbarroso yuslinaz sgoetz kuhn tny sriram_s cdallett uz_labu_laimi sim82 Bioinformatics
	Flavin-dependent enzymes [My Copy] In Comprehensive biological catalysis (1998), pp. 84-100. by B. A. Palfey, V. Massey edited by M. Sinnot posted to jcsg flavoenzymes by ana to the group structural_bioinformatics on 2007-02-10 01:35:30 as along with 1 person and 1 group Einat Bioinformatics
	To be or not to be an oxidase: challenging the oxygen reactivity of flavoenzymes [My Copy] Trends in Biochemical Sciences, Vol. 31, No. 5. (May 2006), pp. 276-283. by Andrea Mattevi posted to jcsg flavoenzymes by ana to the group structural_bioinformatics on 2007-02-09 23:11:20 as along with 1 group Bioinformatics
	The three-dimensional structure of flavodoxin reductase from Escherichia coli at 1.7 a resolution [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 147-157. by Margareta Ingelman, Vera Bianchi, Hans Eklund posted to scop-b-43-4 pdb-1qtj jcsg ferrodoxin-reductase-fad-binding by ana to the group structural_bioinformatics on 2007-02-08 04:10:14 as along with 1 group Bioinformatics
	The molecular structure of Rv2074, a probable pyridoxine 5′-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 Å resolution [My Copy] Acta Crystallographica Section F: Structural Biology and Crystallization Communications, Vol. 62, No. 8. (August 2006), pp. 735-742. by Biswal, B.K., Au, et al. K., Cherney, M.M., Garen, C., James, M.N.G. posted to split-barrel scop-b-45-1-1-pre pdb-2asf jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:41:30 as along with 1 group Bioinformatics
	The crystal structure of CREG, a secreted glycoprotein involved in cellular growth and differentiation. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 51. (20 December 2005), pp. 18326-18331. by M. Sacher, A. Di Bacco, V. V. Lunin, et al.Z. Ye, J. Wagner, G. Gill, M. Cygler posted to split-barrel scop-b-45-1-1-pre pdb-1xhn jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:39:30 as along with 1 group Bioinformatics
	Structures of Mycobacterium tuberculosis pyridoxine 5′-phosphate oxidase and its complexes with flavin mononucleotide and pyridoxal 5′-phosphate [My Copy] Acta Crystallographica Section D Biological Crystallography by Biswal posted to split-barrel scop-b-45-1-1-pre scop-b-45-1-1 pdb-2aq6 pdb-1y30 pdb-1xxo jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:36:39 as along with 1 group Bioinformatics
	Crystal structure of the conserved hypothetical protein Rv1155 from Mycobacterium tuberculosis. [My Copy] FEBS Lett, Vol. 579, No. 1. (3 January 2005), pp. 215-221. by S. Canaan, G. Sulzenbacher, V. Roig-Zamboni, et al.L. Scappuccini-Calvo, F. Frassinetti, D. Maurin, C. Cambillau, Y. Bourne posted to split-barrel scop-b-45-1-1 pdb-1w9a jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:34:31 as along with 1 group Bioinformatics
	Structural Basis of 5-Nitroimidazole Antibiotic Resistance: THE CRYSTAL STRUCTURE OF NimA FROM DEINOCOCCUS RADIODURANS [My Copy] J. Biol. Chem., Vol. 279, No. 53. (31 December 2004), pp. 55840-55849. by Hanna-Kirsti S. Leiros, Sigrid Kozielski-Stuhrmann, Ulrike Kapp, Laurent Terradot, Gordon A. Leonard, Sean M. Mcsweeney posted to split-barrel scop-b-45-1-1 pdb-1w3r pdb-1w3q pdb-1w3p pdb-1w3o jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:31:31 as along with 1 group Bioinformatics
	Crystal structure of a putative pyridoxine 5'-phosphate oxidase (Rv2607) from Mycobacterium tuberculosis. [My Copy] Proteins, Vol. 62, No. 3. (15 March 2006), pp. 563-569. by J. D. Pédelacq, B. S. Rho, C. Y. Kim, et al.G. S. Waldo, T. P. Lekin, B. W. Segelke, B. Rupp, L. W. Hung, S. I. Kim, T. C. Terwilliger posted to split-barrel scop-b-45-1-1-pre pdb-2a2j jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:29:55 as along with 1 group Bioinformatics
	Structure of the phenazine biosynthesis enzyme PhzG [My Copy] Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 11. (01 November 2004), pp. 2110-2113. by Parsons, J.F., Calabrese, et al. K., Eisenstein, E., Ladner, J.E. posted to split-barrel scop-b-45-1-1 pdb-1ty9 pdb-1t9m jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:28:04 as along with 1 group Bioinformatics
	Structure of Escherichia coli pyridoxine 5′-phosphate oxidase in a tetragonal crystal form: insights into the mechanistic pathway of the enzyme [My Copy] Acta Crystallographica Section D Biological Crystallography by Safo posted to split-barrel scop-b-45-1-1 pdb-1wv4 jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:27:28 as along with 1 group Bioinformatics
	X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution. [My Copy] J Mol Biol, Vol. 310, No. 4. (20 July 2001), pp. 817-826. by M. K. Safo, F. N. Musayev, M. L. di Salvo, V. Schirch posted to split-barrel scop-b-45-1-1 pdb-1g79 pdb-1g78 pdb-1g77 pdb-1g76 jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:25:10 as along with 1 group Bioinformatics
	X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with FMN at 1.8 A resolution. [My Copy] Structure, Vol. 8, No. 7. (15 July 2000), pp. 751-762. by M. K. Safo, I. Mathews, F. N. Musayev, et al.M. L. di Salvo, D. J. Thiel, D. J. Abraham, V. Schirch posted to split-barrel scop-b-45-1-1 pdb-1dnl jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:24:41 as along with 1 group Bioinformatics
	How do the x-ray structure and the NMR structure of FMN-binding protein differ? [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 56, No. Pt 3. (March 2000), pp. 368-371. by K. Suto, K. Kawagoe, N. Shibata, et al.Y. Morimoto, Y. Higuchi, M. Kitamura, T. Nakaya, N. Yasuoka posted to split-barrel scop-b-45-1-1 pdb-1flm jcsg by ana to the group structural_bioinformatics on 2007-01-29 19:17:59 as along with 1 group Bioinformatics
	NMR structure and binding studies confirm that PA4608 from Pseudomonas aeruginosa is a PilZ domain and a c-di-GMP binding protein. [My Copy] Proteins, Vol. 66, No. 2. (1 February 2007), pp. 266-271. by T. A. Ramelot, A. Yee, J. R. Cort, A. Semesi, C. H. Arrowsmith, M. A. Kennedy posted to split-barrel scop-b-45-2 pdb-1ywu jcsg by ana to the group structural_bioinformatics on 2007-01-29 18:34:09 as along with 1 person and 1 group martainn Bioinformatics
	Structural classification of thioredoxin-like fold proteins. [My Copy] Proteins, Vol. 58, No. 2. (1 February 2005), pp. 376-388. by Y. Qi, N. V. Grishin posted to jcsg by ana to the group structural_bioinformatics on 2007-01-23 02:55:22 as along with 1 person and 1 group joseolucha Bioinformatics
	Microbial ferric iron reductases. [My Copy] FEMS Microbiol Rev, Vol. 27, No. 2-3. (June 2003), pp. 427-447. by I. Schröder, E. Johnson, S. de Vries posted to split-barrel jcsg by ana to the group structural_bioinformatics on 2007-01-23 02:52:52 as along with 1 group Bioinformatics
	Structural studies on flavin reductase PheA2 reveal binding of NAD in an unusual folded conformation and support novel mechanism of action. [My Copy] J Biol Chem, Vol. 279, No. 13. (26 March 2004), pp. 12860-12867. by R. H. van den Heuvel, A. H. Westphal, A. J. Heck, et al.M. A. Walsh, S. Rovida, W. J. van Berkel, A. Mattevi posted to split-barrel scop-b-45-1-2 pdb-1rz1 pdb-1rz0 jcsg by ana to the group structural_bioinformatics on 2007-01-22 20:39:59 as along with 1 group Bioinformatics
	Structural proteomics of an archaeon. [My Copy] Nat Struct Biol, Vol. 7, No. 10. (October 2000), pp. 903-909. by D. Christendat, A. Yee, A. Dharamsi, et al.Y. Kluger, A. Savchenko, J. R. Cort, V. Booth, C. D. Mackereth, V. Saridakis, I. Ekiel, G. Kozlov, K. L. Maxwell, N. Wu, L. P. McIntosh, K. Gehring, M. A. Kennedy, A. R. Davidson, E. F. Pai, M. Gerstein, A. M. Edwards, C. H. Arrowsmith posted to split-barrel scop-b-45-1-2 pdb-1eje jcsg by ana to the group structural_bioinformatics on 2007-01-22 20:38:18 as along with 1 person and 1 group rph Bioinformatics
	Crystal structures of a novel ferric reductase from the hyperthermophilic archaeon Archaeoglobus fulgidus and its complex with NADP+. [My Copy] Structure, Vol. 9, No. 4. (4 April 2001), pp. 311-319. by H. J. Chiu, E. Johnson, I. Schröder, D. C. Rees posted to split-barrel scop-b-45-1-2 pdb-1i0s pdb-1i0r jcsg by ana to the group structural_bioinformatics on 2007-01-22 20:36:04 as along with 1 group Bioinformatics
	Principles determining the structure of beta-sheet barrels in proteins. II. The observed structures. [My Copy] J Mol Biol, Vol. 236, No. 5. (11 March 1994), pp. 1382-1400. by A. G. Murzin, A. M. Lesk, C. Chothia posted to protein_structure jcsg barrel by ana to the group structural_bioinformatics on 2007-01-18 20:28:59 as along with 1 group Bioinformatics
	Gene duplications in the structural evolution of chymotrypsin. [My Copy] J Mol Biol, Vol. 128, No. 1. (15 February 1979), pp. 49-79. by A. D. McLachlan posted to jcsg barrel by ana to the group structural_bioinformatics on 2007-01-18 19:10:22 as along with 1 group Bioinformatics
	Principles determining the structure of beta-sheet barrels in proteins. I. A theoretical analysis. [My Copy] J Mol Biol, Vol. 236, No. 5. (11 March 1994), pp. 1369-1381. by A. G. Murzin, A. M. Lesk, C. Chothia posted to protein_structure jcsg barrel by ana to the group structural_bioinformatics on 2007-01-18 19:10:07 as along with 1 group Bioinformatics
	Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) [My Copy] Nat Struct Biol, Vol. 4, No. 12. (December 1997), pp. 975-979. by E. Liepinsh, M. Kitamura, T. Murakami, T. Nakaya, G. Otting posted to split-barrel scop-b-45-1-1 pdb-1axj jcsg by ana to the group structural_bioinformatics on 2007-01-18 17:35:47 as along with 1 group Bioinformatics
	Structure and properties of recombinant human pyridoxine 5'-phosphate oxidase. [My Copy] Protein Sci, Vol. 12, No. 7. (July 2003), pp. 1455-1463. by F. N. Musayev, M. L. Di Salvo, T. P. Ko, V. Schirch, M. K. Safo posted to split-barrel scop-b-45-1-1 pdb-1nrg jcsg by ana to the group structural_bioinformatics on 2007-01-17 02:47:09 as along with 1 group Bioinformatics
	Probable circular permutation in the flavin-binding domain. [My Copy] Nat Struct Biol, Vol. 5, No. 2. (February 1998) by A. G. Murzin posted to split-barrel scop-b-45 scop-b-43-4 jcsg ferredoxin-reductase-fad-binding by ana to the group structural_bioinformatics on 2007-01-17 00:30:52 as along with 1 group Bioinformatics
	Structure and mechanism of Escherichia coli pyridoxine 5'-phosphate oxidase. [My Copy] Biochim Biophys Acta, Vol. 1647, No. 1-2. (11 April 2003), pp. 76-82. by M. L. di Salvo, M. K. Safo, F. N. Musayev, F. Bossa, V. Schirch posted to split-barrel scop-b-45-1-1 pdb-1ci0 jcsg by ana to the group structural_bioinformatics on 2007-01-16 20:10:57 as along with 1 group Bioinformatics
	Active site structure and stereospecificity of Escherichia coli pyridoxine-5'-phosphate oxidase. [My Copy] J Mol Biol, Vol. 315, No. 3. (18 January 2002), pp. 385-397. by M. L. di Salvo, T. P. Ko, F. N. Musayev, S. Raboni, V. Schirch, M. K. Safo posted to split-barrel scop-b-45-1-1 pdb-1jnw jcsg by ana to the group structural_bioinformatics on 2007-01-16 19:33:19 as along with 1 group Bioinformatics
	MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621. by Angel R. Ortiz, Charlie E. Strauss, Osvaldo Olmea posted to structure_comparison structure_alignment protein_structure jcsg by ana to the group structural_bioinformatics on 2007-01-16 01:12:02 as along with 8 people and 1 group tomjad awarlau iakes dimka jwm analogAI sebk tjimenez Bioinformatics

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split-barrel	63
scop-b-45-1-1	36
function_evolution	15
protein_structure	15
family-size	12
scop-b-45-1-1-pre	12
barrel	9
scop-b-45-1-2	9
structural_genomics	7
phylogenetics	6
protein_sequence	6
scop-b-43-4	6
family_analysis	3
ferredoxin-reductase-fad-binding	3
ferrodoxin-reductase-fad-binding	3
flavoenzymes	3
pdb-1axj	3
pdb-1ci0	3
pdb-1dnl	3
pdb-1eje	3
pdb-1flm	3
pdb-1g76	3
pdb-1g77	3
pdb-1g78	3
pdb-1g79	3
pdb-1i0r	3
pdb-1i0s	3
pdb-1jnw	3
pdb-1nrg	3
pdb-1qtj	3
pdb-1rz0	3
pdb-1rz1	3
pdb-1t9m	3
pdb-1ty9	3
pdb-1w3o	3
pdb-1w3p	3
pdb-1w3q	3
pdb-1w3r	3
pdb-1w9a	3
pdb-1wv4	3
pdb-1xhn	3
pdb-1xxo	3
pdb-1y30	3
pdb-1ywu	3
pdb-2a2j	3
pdb-2aq6	3
pdb-2asf	3
scop-b-45	3
scop-b-45-2	3
structure_alignment	3
structure_comparison	3
visualization	3
target_selection	1

Group: structural_bioinformatics - with tag jcsg [42 articles] Export

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