Group: structural_bioinformatics - with tag pca [27 articles] Export

Recent papers posted by members of the structural_bioinformatics group with tag pca

	A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules [My Copy] Biophysical Journal, Vol. 95, No. 11. (01 December 2008), pp. 5073-5083. by Z. Zhang, L. Lu, W. Noid, V. Krishna, J. Pfaendtner, G. Voth posted to coarse_grain pca by barry to the group structural_bioinformatics on 2009-02-26 02:08:44 as along with 5 people and 1 group okapi sobolevnrm choonpeng agrossfield paulschlesinger McCammon
	Principal component analysis for protein folding dynamics [My Copy] Journal of Molecular Biology (15 October 2008) by G. Maisuradze, A. Liwo, H. Scheraga posted to pca protein_folding by barry to the group structural_bioinformatics on 2008-10-30 04:05:03 as along with 4 people Diego_Prada scampos phoenixzxl paulschlesinger
	Mapping the Nucleotide and Isoform-Dependent Structural and Dynamical Features of Ras Proteins [My Copy] Structure, Vol. 16, No. 6. (11 June 2008), pp. 885-896. by Alemayehu A. Gorfe, Barry J. Grant, Andrew J. Mccammon posted to md_simulation mine ntpases pca protein_dynamics protein_structure ras by barry to the group structural_bioinformatics on 2008-06-10 22:34:01 as along with 1 person and 1 group allmensch Bioinformatics
	Dihedral angle principal component analysis of molecular dynamics simulations [My Copy] The Journal of Chemical Physics, Vol. 126, No. 24. (2007) by Alexandros Altis, Phuong H. Nguyen, Rainer Hegger, Gerhard Stock posted to md_simulation pca torsion_angles by barry to the group structural_bioinformatics on 2007-09-27 20:06:59 as along with 4 people scampos Diego_Prada ruvido nh
	Dihedral angle principal component analysis of molecular dynamics simulations [My Copy] Journal of Chemical Physics, Vol. 126 (2007) by A. Altis, P. H. Nguyen, R. Hegger, G. Stock posted to torsion_angles pca md_simulation by barry to the group structural_bioinformatics on 2007-08-28 02:10:54 as along with 1 person and 2 groups sobolevnrm Bioinformatics baker-group
	Characterization of Protein Conformational States by Normal-Mode Frequencies [My Copy] J. Am. Chem. Soc. (23 August 2007) by B. A. Hall, S. L. Kaye, A. Pang, R. Perera, P. C. Biggin posted to protein_structure pca nma md_simulation clustering by barry to the group structural_bioinformatics on 2007-08-27 19:15:41 as along with 7 people and 2 groups Diego_Prada Scis0000002 ubcg08l aqeel choonpeng sobolevnrm LamBras Bioinformatics baker-group
	Are There Non-trivial Dynamic Cross-correlations in Proteins? [My Copy] pp. 911-920. by R. Abseher posted to pca distance_matrices correlated_motions by barry to the group structural_bioinformatics on 2007-07-26 02:50:50 as along with 1 group Bioinformatics
	Visualization of conformational distribution of short to medium size segments in globular proteins and identification of local structural motifs. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1253-1265. by K. Ikeda, K. Tomii, T. Yokomizo, et al.D. Mitomo, K. Maruyama, S. Suzuki, J. Higo posted to protein_structure protein_fragments pca by barry to the group structural_bioinformatics on 2007-05-03 21:50:25 as along with 1 person and 1 group lsdc1 Bioinformatics
	Multivariate Analysis of Conserved Sequence-Structure Relationships in Kinesins: Coupling of the Active Site and a Tubulin-binding Sub-domain [My Copy] Journal of Molecular Biology, Vol. 368, No. 5. (18 May 2007), pp. 1231-1248. by Barry J. Grant, Andrew J. Mccammon, Leo S. Caves, Robert A. Cross posted to torsion_angles swi-swii structural_bioinformatics sca r protein_structure protein_sequence protein_dynamics pca p-loop ntpases molecular_motors mine kinesin domain_motions correlated_motions core_structure clustering bioinf_methods by barry to the group structural_bioinformatics on 2007-04-27 17:41:06 as along with 3 people and 1 group choonpeng cactus insectopalo Bioinformatics
	Analyzing large-scale structural change in proteins: comparison of principal component projection and Sammon mapping. [My Copy] Proteins, Vol. 64, No. 1. (1 July 2006), pp. 210-218. by S. Mesentean, S. Fischer, J. C. Smith posted to pca md_simulation clustering by barry to the group structural_bioinformatics on 2007-03-27 00:20:10 as along with 1 group Bioinformatics
	Conservation and specialization in PAS domain dynamics. [My Copy] Protein Eng Des Sel, Vol. 18, No. 3. (March 2005), pp. 127-137. by A. Pandini, L. Bonati posted to protein_dynamics pca allosteric by barry to the group structural_bioinformatics on 2007-01-19 22:06:49 as along with 1 group Bioinformatics
	Can principal components yield a dimension reduced description of protein dynamics on long time scales? [My Copy] The Journal Of Physical Chemistry. B, Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, Vol. 110, No. 45. (16 November 2006), pp. 22842-22852. by Oliver F. Lange, Helmut Grubmuller posted to md_simulation pca by barry to the group structural_bioinformatics on 2006-12-08 18:42:44 as along with 1 group Bioinformatics
	Bio3d: an R package for the comparative analysis of protein structures. [My Copy] Bioinformatics (29 August 2006) by Barry J J. Grant, Ana P C P. Rodrigues, Karim M M. Elsawy, J Andrew A. McCammon, Leo S D S. Caves posted to structure_superposition structure_comparison sequence_comparison r protein_structure pca multiple_structure_comparison molecular_dynamics mine by ana to the group structural_bioinformatics on 2006-10-11 03:38:28 as along with 9 people and 1 group dfdong dswan gisle barry Einat plofje krishnaJCSG insectopalo cdeane Bioinformatics
	THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures [My Copy] Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2171-2172. by Douglas L. Theobald, Deborah S. Wuttke posted to algorithms pca structure_comparison structure_superposition by ana to the group structural_bioinformatics on 2006-09-02 19:55:00 as along with 1 person and 1 group dimka Bioinformatics
	COMPUTER SCIENCE: New Life for Neural Networks [My Copy] Science, Vol. 313, No. 5786. (28 July 2006), pp. 454-455. by Garrison W. Cottrell posted to algorithms neural_networks pca r statistics by ana to the group structural_bioinformatics on 2006-07-29 03:23:44 as along with 2 people and 1 group sato-ryu ygarb Bioinformatics
	Reducing the Dimensionality of Data with Neural Networks [My Copy] Science, Vol. 313, No. 5786. (28 July 2006), pp. 504-507. by G. E. Hinton, R. R. Salakhutdinov posted to algorithms neural_networks pca r statistics by ana to the group structural_bioinformatics on 2006-07-29 03:20:56 as along with 26 people and 8 groups dakelley mthomure pascanur jdoconnell __andy__ euclid austincarp babakap zheaton brian pdlug barry garyfeng mrkrause yama_tah neilh sdvillal dwf jwdietrich rgb mp4man josepe marcusfrean robincha ygarb ancechu ReadingLab MathBio Bioinformatics Cybernetics pileWorks S-Lab Biomedical_Cybernetics AQUA-FONTIS-Study
	The essential dynamics of thermolysin: confirmation of the hinge-bending motion and comparison of simulations in vacuum and water. [My Copy] Proteins, Vol. 22, No. 1. (May 1995), pp. 45-54. by D. M. van Aalten, A. Amadei, A. B. Linssen, V. G. Eijsink, G. Vriend, H. J. Berendsen posted to md_simulation pca protein_dynamics protein_structure by barry to the group structural_bioinformatics on 2006-03-17 20:07:25 as along with 1 group Bioinformatics
	Hierarchical structure of the energy landscape of proteins revisited by time series analysis. I. Mimicking protein dynamics in different time scales [My Copy] The Journal Of Chemical Physics, Vol. 123, No. 14. (8 October 2005), pp. 144910-144910. by Burak Alakent, Mehmet C. Camurdan, Pemra Doruker posted to md_simulation pca time_series_analysis by barry to the group structural_bioinformatics on 2005-12-05 19:15:31 as along with 1 group Bioinformatics
	The physical determinants of the DNA conformational landscape: an analysis of the potential energy surface of single-strand dinucleotides in the conformational space of duplex DNA [My Copy] Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5749-5762. by Karim M. Elsawy, Michael K. Hodgson, Leo S. Caves posted to dna dna_structure molecular_dynamics pca pes potential by ana to the group structural_bioinformatics on 2005-11-22 18:56:11 as along with 1 person and 1 group hirokiS Bioinformatics
	Hierarchical clustering of the correlation patterns: New method of domain identification in proteins. [My Copy] Biophys Chem (24 August 2005) by S O O. Yesylevskyy, V N N. Kharkyanen, A P P. Demchenko posted to domain_motions nma pca protein_dynamics by barry to the group structural_bioinformatics on 2005-10-08 00:55:14 as along with 2 people and 2 groups yongzhao choonpeng Bioinformatics TSRI_MGL
	Dynamite extended: two new services to simplify protein dynamic analysis [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 14. (15 July 2005), pp. 3174-3175. by Paul C. Barrett, Martin E. Noble posted to bioinf_methods pca by barry to the group structural_bioinformatics on 2005-10-03 19:22:26 as along with 1 group Bioinformatics
	Molecular dynamics simulations of evolved collective motions of atoms in the myosin motor domain upon perturbation of the ATPase pocket [My Copy] Biophysical Chemistry, Vol. 115, No. 1. (1 May 2005), pp. 77-85. by Tatsuyuki Kawakubo, Okimasa Okada, Tomoyuki Minami posted to allosteric md_simulation myosin pca protein_dynamics by barry to the group structural_bioinformatics on 2005-09-20 18:41:52 as along with 1 person and 1 group julien_lv Bioinformatics
	A geometric invariant-based framework for the analysis of protein conformational space [My Copy] Bioinformatics, Vol. Advance Access (11 August 2005) by A. V. Tendulkar, M. A. Sohoni, B. Ogunnaike, P. P. Wangikar posted to model_refinement pca protein_structure structure_comparison by ana to the group structural_bioinformatics on 2005-08-12 20:29:10 as along with 1 person and 1 group lsdc1 Bioinformatics
	The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein-Protein Complexes with an Application to Protein-Protein Docking [My Copy] Journal of Molecular Biology, Vol. 347, No. 5. (15 April 2005), pp. 1077-1101. by Graham R. Smith, Michael Sternberg, Paul A. Bates posted to molecular_dynamics pca protein_interaction protein_structure structure_flexible by ana to the group structural_bioinformatics on 2005-06-27 18:07:39 as along with 6 people and 2 groups barry aqeel bicko yongzhao ttjoseph jteyra Bioinformatics TSRI_MGL
	Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351. by B. Qian, A. R. Ortiz, D. Baker posted to comparative_modeling model_refinement multiple_structure_comparison pca protein_structure structure_prediction by ana to the group structural_bioinformatics on 2005-05-24 22:32:15 as along with 6 people and 3 groups krapnik aqeel barry lna marcius dgront Bioinformatics BioinfoCIPF SGU-CIPF
	An analysis of core deformations in protein superfamilies. [My Copy] Biophys J, Vol. 88, No. 2. (February 2005), pp. 1291-1299. by A. Leo-Macias, P. Lopez-Romero, D. Lupyan, D. Zerbino, A. R. Ortiz posted to multiple_structure_comparison nma pca protein_structure structure_core by ana to the group structural_bioinformatics on 2005-05-11 00:41:04 as along with 8 people and 1 group dfdong apaydin barry lna dimka aqeel insectopalo edvin Bioinformatics
	Core deformations in protein families: a physical perspective. [My Copy] Biophys Chem, Vol. 115, No. 2-3. (1 April 2005), pp. 125-128. by A. Leo-Macias, P. Lopez-Romero, D. Lupyan, D. Zerbino, A. R. Ortiz posted to multiple_structure_comparison nma pca protein_structure structure_core by ana to the group structural_bioinformatics on 2005-04-20 23:52:01 as along with 3 people and 1 group lna dimka edvin Bioinformatics

Note: You may cite this page as: http://www.citeulike.org/group/122/tag/pca

statistics	63
clustering	39
protein_structure	33
md_simulation	27
ica	26
svd	26
protein_dynamics	25
methods	22
microarray	22
em	21
analysis	20
nma	18
review	18
dimension-reduction	17
component	15
principal	15
r	15
reduction	15
kernel	14
md	14
articulo	13
climate	13
dimensionality	13
classification	12
data	12
multiple_structure_comparison	12
dynamics	11
eof	11
model	11
multivariate	11
pls	11
shape	11
dimensionality-reduction	10
molecular_dynamics	10
algorithms	9
gelenkskopplung	9
mine	9
regression	9
spc	9
bioinformatics	8
dpca	8
fmri	8
gene-expression	8
mspc	8
neural_networks	8
sparsity	8
structure	8
correlated_motions	7
detection	7
eeg	7
erp	7
europe	7
free-energy	7
missing	7
modeling	7
nmr	7
population	7
reactmethods	7
sampling	7
segmentation	7
stratification	7
structure_comparison	7
unsupervised	7
allosteric	6
bayesian	6
bioinf_methods	6
cancer	6
coding	6
correlation	6
domain_motions	6
face	6
functional-connectivity	6
internship-09	6
machine-learning	6
monitoring	6
ntpases	6
pathway	6
principal-component-analysis	6
selection	6
spectral	6
structure_core	6
structure_superposition	6
torsion_angles	6
tutorial	6
bone	5
cca	5
dna	5
fft	5
gene	5
gnm	5
image-analysis	5
journal	5
lda	5
lsi	5
pet	5
simulation	5
sparse	5
supervised	5
survey	5
taxonomy	5

Group: structural_bioinformatics - with tag pca [27 articles] Export

Related Tags