Group: structural_bioinformatics - with tag protein_folding [36 articles] Export

Recent papers posted by members of the structural_bioinformatics group with tag protein_folding

	Network and graph analyses of folding free energy surfaces [My Copy] Current Opinion in Structural Biology In Protein-nucleic acid interactions/Folding and binding - Wei Yang and Gregory D Van Dyne/Mikael Oliveberg and Eugene I Shakhnovich, Vol. 16, No. 1. (February 2006), pp. 71-78. by Amedeo Caflisch posted to networks protein_folding review by barry to the group structural_bioinformatics on 2009-02-09 19:38:29 as along with 5 people apaydin bilab mtw jlh64 Diego_Prada
	Principal component analysis for protein folding dynamics [My Copy] Journal of Molecular Biology (15 October 2008) by G. Maisuradze, A. Liwo, H. Scheraga posted to pca protein_folding by barry to the group structural_bioinformatics on 2008-10-30 04:05:03 as along with 4 people Diego_Prada scampos phoenixzxl paulschlesinger
	Supercharging Proteins Can Impart Unusual Resilience [My Copy] J. Am. Chem. Soc., Vol. 129, No. 33. (22 August 2007), pp. 10110-10112. by M. S. Lawrence, K. J. Phillips, D. R. Liu posted to electrostatics journal_club protein_design protein_evolution protein_folding by barry to the group structural_bioinformatics on 2007-10-26 22:37:58 as along with 2 people and 2 groups samjlord sobolevnrm moernerlab baker-group
	Phylogeny of protein-folding trajectories reveals a unique pathway to native structure. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 51. (21 December 2004), pp. 17658-17663. by M. Ota, M. Ikeguchi, A. Kidera posted to protein_structure protein_folding md_simulation contacts clustering by barry to the group structural_bioinformatics on 2007-08-10 18:38:42 as along with 1 group Bioinformatics
	Unfolding Pathways of Goat [alpha]-Lactalbumin as Revealed in Multiple Alignment of Molecular Dynamics Trajectories [My Copy] Journal of Molecular Biology, Vol. 371, No. 5. (31 August 2007), pp. 1354-1364. by Tomotaka Oroguchi, Mitsunori Ikeguchi, Motonori Ota, Kunihiro Kuwajima, Akinori Kidera posted to protein_structure protein_folding md_simulation contacts clustering by barry to the group structural_bioinformatics on 2007-08-10 18:36:13 as along with 1 person and 1 group choonpeng Bioinformatics
	Protein folding: Then and now. [My Copy] Arch Biochem Biophys (8 June 2007) by Yiwen Chen, Feng Ding, Huifen Nie, et al.Adrian W W. Serohijos, Shantanu Sharma, Kyle C C. Wilcox, Shuangye Yin, Nikolay V V. Dokholyan posted to publications protein_folding by shantanu to the group structural_bioinformatics on 2007-07-02 01:12:30 as along with 1 person and 7 groups choonpeng MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	iFold: a platform for interactive folding simulations of proteins. [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2693-2694. by S. Sharma, F. Ding, H. Nie, et al.D. Watson, A. Unnithan, J. Lopp, D. Pozefsky, N. V. Dokholyan posted to simulation publications protein_folding by shantanu to the group structural_bioinformatics on 2007-04-26 00:50:16 as along with 1 person and 7 groups plofje MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Early Protein Evolution: Building Domains from Ligand-binding Polypeptide Segments [My Copy] Journal of Molecular Biology, Vol. 363, No. 2. (20 October 2006), pp. 460-468. by Lutz Riechmann, Greg Winter posted to protein_evolution protein_folding protein_fragments by barry to the group structural_bioinformatics on 2006-09-29 19:10:15 as along with 2 people and 1 group jwm cjeans Bioinformatics
	Clustering of low-energy conformations near the native structures of small proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 19. (15 September 1998), pp. 11158-11162. by D. Shortle, K. T. Simons, D. Baker posted to protein_design protein_dynamics protein_folding protein_sequence protein_structure by barry to the group structural_bioinformatics on 2006-03-22 20:15:18 as along with 3 people and 4 groups thaliana dgront joergkurtwegner Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Geometry and symmetry presculpt the free-energy landscape of proteins [My Copy] PNAS, Vol. 101, No. 21. (25 May 2004), pp. 7960-7964. by Trinh X. Hoang, Antonio Trovato, Flavio Seno, Jayanth R. Banavar, Amos Maritan posted to protein_folding protein_structure by ana to the group structural_bioinformatics on 2006-03-08 21:52:00 as along with 3 people and 1 group barry mtw naitsabes Bioinformatics
	Topological Determinants of Protein Domain Swapping [My Copy] Structure, Vol. 14, No. 1. (January 2006), pp. 5-14. by Feng Ding, Kirk C. Prutzman, Sharon L. Campbell, Nikolay V. Dokholyan posted to contacts core_structure domain_motions domain_swapping networks protein_dynamics protein_folding protein_structure by barry to the group structural_bioinformatics on 2006-01-16 20:12:22 as along with 1 group Bioinformatics
	Statistical potentials for fold assessment. [My Copy] Protein Sci, Vol. 11, No. 2. (February 2002), pp. 430-448. by F. Melo, R. Sánchez, A. Sali posted to comparative_model protein_folding protein_structure by barry to the group structural_bioinformatics on 2005-11-11 20:31:44 as along with 6 people and 1 group rabio krapnik mijam mcbla eckart_bindewald dgront Bioinformatics
	Analysis methods for comparison of multiple molecular dynamics trajectories: applications to protein unfolding pathways and denatured ensembles. [My Copy] J Mol Biol, Vol. 290, No. 1. (2 July 1999), pp. 283-304. by S. L. Kazmirski, A. Li, V. Daggett posted to md_simulation protein_folding by barry to the group structural_bioinformatics on 2005-10-26 00:12:22 as along with 2 people and 1 group lillekatt choonpeng Bioinformatics
	Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196. by L. A. Mirny, E. I. Shakhnovich posted to protein_evolution protein_folding protein_function protein_structure sequence_comparison structure_comparison by ana to the group structural_bioinformatics on 2005-09-28 01:09:51 as along with 4 people and 3 groups dfdong barry Einat marcius Bioinformatics BioinfoCIPF SGU-CIPF
	Identifying importance of amino acids for protein folding from crystal structures. [My Copy] Methods Enzymol, Vol. 374 (2003), pp. 616-638. by N. V. Dokholyan, J. M. Borreguero, S. V. Buldyrev, F. Ding, H. E. Stanley, E. I. Shakhnovich posted to protein_folding protein_structure review by barry to the group structural_bioinformatics on 2005-09-28 00:58:34 as along with 1 group Bioinformatics
	Small-world view of the amino acids that play a key role in protein folding. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 6 Pt 1. (June 2002) by M. Vendruscolo, N. V. Dokholyan, E. Paci, M. Karplus posted to graph_theory protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-09-27 23:12:15 as along with 3 people and 7 groups barry shantanu choonpeng MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	On Evolutionary Conservation of Thermodynamic Coupling in Proteins [My Copy] Journal of Biological Chemistry, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050. by Anthony A. Fodor, Richard W. Aldrich posted to correlated_mutations protein_evolution protein_folding protein_function protein_structure statistical_coupling_analysis by ana to the group structural_bioinformatics on 2005-09-27 22:12:45 as along with 8 people and 1 group dfdong barry gbart cjeans tale friendpine ca3295 Lombardo_7 Bioinformatics
	Protein folding and the organization of the protein topology universe. [My Copy] Trends in biochemical sciences, Vol. 30, No. 1. (January 2005), pp. 13-19. by K. Lindorff-Larsen, P. Røgen, E. Paci, M. Vendruscolo, C. M. Dobson posted to protein_folding protein_structure protein_universe by ana to the group structural_bioinformatics on 2005-09-27 21:53:55 as along with 3 people and 1 group flbarroso baaden allmensch Bioinformatics
	The present view of the mechanism of protein folding. [My Copy] Nat Rev Mol Cell Biol, Vol. 4, No. 6. (June 2003), pp. 497-502. by V. Daggett, A. Fersht posted to protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-09-27 21:50:06 as along with 3 people and 1 group okarsligil bilab mirzazadeh Bioinformatics
	Mutational Analysis Demonstrates that Specific Electrostatic Interactions can Play a Key Role in the Denatured State Ensemble of Proteins [My Copy] Journal of Molecular Biology, Vol. 353, No. 1. (14 October 2005), pp. 174-185. by Jae-Hyun Cho, Daniel P. Raleigh posted to electrostatics protein_folding by barry to the group structural_bioinformatics on 2005-09-24 00:37:36 as along with 1 group Bioinformatics
	Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model. [My Copy] J Mol Biol, Vol. 313, No. 1. (12 October 2001), pp. 171-180. by N. Koga, S. Takada posted to go_model protein_folding by barry to the group structural_bioinformatics on 2005-09-19 21:58:26 as along with 2 people and 1 group aalibes nigham Bioinformatics
	Contact order revisited: influence of protein size on the folding rate. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2057-2062. by D. N. Ivankov, S. O. Garbuzynskiy, E. Alm, K. W. Plaxco, D. Baker, A. V. Finkelstein posted to contact_order protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-09-15 01:17:10 as along with 3 people and 1 group kentsis choonpeng RamuAnandakrishnan Bioinformatics
	Mechanisms of protein folding. [My Copy] Curr Opin Struct Biol, Vol. 11, No. 1. (February 2001), pp. 70-82. by V. Grantcharova, E. J. Alm, D. Baker, A. L. Horwich posted to contact_order protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-09-15 01:16:02 as along with 3 people and 1 group Einat leemary4 rph Bioinformatics
	Contact order, transition state placement and the refolding rates of single domain proteins. [My Copy] J Mol Biol, Vol. 277, No. 4. (10 April 1998), pp. 985-994. by K. W. Plaxco, K. T. Simons, D. Baker posted to contact_order protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-09-15 01:12:45 as along with 2 people and 1 group kentsis aalibes Bioinformatics
	Three key residues form a critical contact network in a protein folding transition state. [My Copy] Nature, Vol. 409, No. 6820. (1 February 2001), pp. 641-645. by M. Vendruscolo, E. Paci, C. M. Dobson, M. Karplus posted to contact_prediction protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-09-14 02:16:23 as along with 1 person and 1 group allmensch Bioinformatics
	Transition State Contact Orders Correlate with Protein Folding Rates [My Copy] Journal of Molecular Biology, Vol. 352, No. 3. (23 September 2005), pp. 495-500. by Emanuele Paci, Kresten Lindorff-Larsen, Christopher M. Dobson, Martin Karplus, Michele Vendruscolo posted to contact_order molecular_dynamics protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-09-09 19:14:31 as along with 2 people and 1 group allmensch RamuAnandakrishnan Bioinformatics
	Hydrogen bonding in globular proteins. [My Copy] J Mol Biol, Vol. 226, No. 4. (20 August 1992), pp. 1143-1159. by D. F. Stickle, L. G. Presta, K. A. Dill, G. D. Rose posted to hydrogen-bond interaction_hierarchy protein_folding protein_stability protein_structure by ana to the group structural_bioinformatics on 2005-09-03 00:40:24 as along with 1 person and 1 group lna Bioinformatics
	Residue contacts in protein structures and implications for protein folding. [My Copy] Int J Pept Protein Res, Vol. 24, No. 1. (July 1984), pp. 25-39. by S. V. Narayana, P. Argos posted to contact_maps interaction_hierarchy protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-08-29 21:44:32 as along with 1 group Bioinformatics
	Excluded volume in protein side-chain packing [My Copy] Journal of Molecular Biology, Vol. 311, No. 1. (03 August 2001), pp. 183-193. by E. Kussell posted to interaction_hierarchy protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-08-29 21:33:48 as along with 2 people and 1 group sebk carlk Bioinformatics
	Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction. [My Copy] J Mol Biol, Vol. 310, No. 1. (29 June 2001), pp. 27-32. by M. M. Gromiha, S. Selvaraj posted to contact_order interaction_hierarchy protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-08-29 21:32:08 as along with 1 group Bioinformatics
	Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins. [My Copy] Macromolecules, Vol. 9, No. 6. (c 1976), pp. 945-950. by S. Tanaka, H. A. Scheraga posted to interaction_hierarchy protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-08-29 21:24:33 as along with 4 people and 1 group thaliana dgront aengisch mcbla Bioinformatics
	Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid. [My Copy] The Journal of chemical physics, Vol. 120, No. 3. (15 January 2004), pp. 1602-1612. by A. Mukherjee, B. Bagchi posted to contact_maps protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-08-29 21:11:26 as along with 2 people and 1 group flbarroso choonpeng Bioinformatics
	STRUCTURAL BIOLOGY: Learning to Speak the Language of Proteins [My Copy] Science, Vol. 302, No. 5649. (21 November 2003), pp. 1347-1348. by David T. Jones posted to protein_design protein_folding protein_structure sequence_structure by ana to the group structural_bioinformatics on 2005-05-06 21:50:01 as along with 1 person and 1 group karbak Bioinformatics
	Understanding protein folding via free-energy surfaces from theory and experiment. [My Copy] Trends Biochem Sci, Vol. 25, No. 7. (July 2000), pp. 331-339. by A. R. Dinner, A. Sali, L. J. Smith, C. M. Dobson, M. Karplus posted to protein_evolution protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-05-03 03:49:29 as along with 1 person and 1 group rabio Bioinformatics
	Origins of structure in globular proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 87, No. 16. (August 1990), pp. 6388-6392. by H. S. Chan, K. A. Dill posted to contact_maps protein_folding protein_structure by ana to the group structural_bioinformatics on 2005-04-20 03:03:31 as along with 1 person and 1 group carlosjavierna Bioinformatics
	How does a protein fold? [My Copy] Nature, Vol. 369, No. 6477. (19 May 1994), pp. 248-251. by A. Sali, E. Shakhnovich, M. Karplus posted to fold_space protein_evolution protein_folding protein_sequence protein_structure structural_bioinformatics by barry to the group structural_bioinformatics on 2005-03-16 03:16:39 as along with 2 people and 1 group ucbcjbm evaf Bioinformatics

Note: You may cite this page as: http://www.citeulike.org/group/122/tag/protein_folding

protein_structure	120
review	37
solvation	33
electrostatics	25
bioinformatics	24
protein_dynamics	23
protein_design	20
protein_evolution	20
evolution	18
free-energy	18
publications	18
implicit_solvation	17
interaction_hierarchy	17
molecular_dynamics	17
biophysics	16
contact_order	15
gb	13
computational_biology	12
molecular_simulation	12
simulation	12
contacts	10
pka	10
contact_maps	9
folding	9
fret	9
md_simulation	9
phi_value_analysis	9
protein_fragments	9
rate_determination	9
structure	9
clustering	8
protein_engineering	8
proteins	8
kinetics	7
pfold	7
protein	7
short-peptides	7
single_molecule	7
unfolded_state	7
entropy	6
go_model	6
hexapeptide	6
hp_model	6
multiscale	6
networks	6
protein-ligand_interactions	6
protein_function	6
protein_sequence	6
protein_threading	6
software	6
structural_genomics	6
nmr	5
protein_stability	5
aggregation	4
amyloids	4
comparative_modeling	4
energy_landscapes	4
experimental_methodology	4
fcs	4
force_field	4
free_energy	4
graphical_models	4
misfolding	4
monte_carlo	4
nonviral_gene_delivery	4
nucleic_acids	4
ph	4
phi_analysis	4
sequence_structure	4
structure_prediction	4
thermodynamics	4
allostery	3
beta-hairpin	3
chaperone	3
comparative_model	3
correlated_mutations	3
database	3
disease	3
domain_motions	3
domain_swapping	3
electrostatic	3
fluorescence	3
fold_space	3
graph_theory	3
hydrogen-bond	3
journal	3
methods	3
model_assessment	3
pca	3
protein_ligand_binding	3
protein_universe	3
rate_prediction	3
signal_transduction	3
stability	3
statistical_coupling_analysis	3
statistical_mechanics	3
structural_bioinformatics	3
structure_comparison	3
tocopy	3
transition_states	3

Group: structural_bioinformatics - with tag protein_folding [36 articles] Export

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