Group: structural_bioinformatics - with tag review [117 articles] Export

Recent papers posted by members of the structural_bioinformatics group with tag review

	Exploring conformational modes of macromolecular assemblies by multiparticle cryo-EM. [My Copy] Current opinion in structural biology, Vol. 19, No. 5. (18 October 2009), pp. 623-631. by Christian M. Spahn, Pawel A. Penczek posted to review cryo_em bioinf_methods by barry to the group structural_bioinformatics on 2009-10-16 17:11:25 as along with 1 person and 1 group paulschlesinger McCammon
	Structural snapshots of conformational changes in a seven-helix membrane protein: lessons from bacteriorhodopsin [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 4. (28 August 2009), pp. 433-439. by Teruhisa Hirai, Sriram Subramaniam, Janos K. Lanyi posted to review bacteriorhodopsin by barry to the group structural_bioinformatics on 2009-09-01 19:30:57 as along with 1 group McCammon
	The origin of allosteric functional modulation: multiple pre-existing pathways. [My Copy] Structure (London, England : 1993), Vol. 17, No. 8. (12 August 2009), pp. 1042-1050. by Antonio del Sol, Chung-Jung J. Tsai, Buyong Ma, Ruth Nussinov posted to review allosteric by barry to the group structural_bioinformatics on 2009-08-17 23:19:29 as along with 4 people and 1 group ubcg08l higueruelo pablocarb okapi McCammon
	Navigating the ribosome's metastable energy landscape. [My Copy] Trends in biochemical sciences (30 July 2009) by James B. Munro, Kevin Y. Sanbonmatsu, Christian M. Spahn, Scott C. Blanchard posted to protein_dynamics review ribosome by barry to the group structural_bioinformatics on 2009-08-06 23:38:31 as along with 2 people and 1 group anuragsethi reyez McCammon
	Advances and pitfalls of protein structural alignment. [My Copy] Current opinion in structural biology, Vol. 19, No. 3. (27 June 2009), pp. 341-348. by Hitomi Hasegawa, Liisa Holm posted to review structural_bioinformatics structure_comparison by barry to the group structural_bioinformatics on 2009-06-08 04:25:56 as along with 4 people and 2 groups sebk davidalee dgront sobolevnrm OPIG Orengo Group Journal Picks
	Biophysical dissection of membrane proteins [My Copy] Nature, Vol. 459, No. 7245. (20 May 2009), pp. 344-346. by Stephen H. White posted to membrane_proteins review by barry to the group structural_bioinformatics on 2009-05-21 22:56:03 as along with 9 people and 2 groups amoszlj rph girayenkavi ColumbusLabs viktor21614 kevinchannon hsekiguc sobolevnrm paulschlesinger McCammon baker-group
	Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility [My Copy] Journal of Biological Chemistry, Vol. 284, No. 20. (15 May 2009), pp. 13285-13289. by C. Nick Pace, Gerald R. Grimsley, J. Martin Scholtz posted to pka review by barry to the group structural_bioinformatics on 2009-05-21 04:04:03 as along with 6 people and 2 groups pjkiley scampos klexa nanonan sobolevnrm paulschlesinger McCammon baker-group
	Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures [My Copy] FEBS Journal, Vol. 275, No. 1. (January 2008), pp. 1-21. by Wlodawer, Alexander, Minor, et al. Wladek, Dauter, Zbigniew, Jaskolski, Mariusz posted to protein_structure review by barry to the group structural_bioinformatics on 2009-05-21 04:02:34 as along with 6 people and 2 groups klexa nanonan sobolevnrm ae1054 aisyahrehan rph McCammon baker-group
	Recent advances in computer-aided drug design. [My Copy] Briefings in bioinformatics (11 May 2009) by Chun Meng M. Song, Shen Jean J. Lim, Joo Chuan C. Tong posted to drug_design review by barry to the group structural_bioinformatics on 2009-05-18 20:06:10 as along with 3 people and 1 group klexa nanonan apaydin McCammon
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to protein_dynamics protein_evolution protein_sequence review by barry to the group structural_bioinformatics on 2009-04-23 02:50:03 as along with 20 people and 2 groups dfdong tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k pablocarb ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger McCammon baker-group
	Multiscale Modeling of Form and Function [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 208-212. by Adam J. Engler, Patrick O. Humbert, Bernhard Wehrle-Haller, Valerie M. Weaver posted to multiscale review by barry to the group structural_bioinformatics on 2009-04-23 02:49:17 as along with 2 people and 2 groups edws sobolevnrm McCammon baker-group
	Trapping Moving Targets with Small Molecules [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 213-215. by Gregory M. Lee, Charles S. Craik posted to protein_ligand review by barry to the group structural_bioinformatics on 2009-04-23 02:48:45 as along with 6 people and 2 groups guhjy nanonan sobolevnrm pablocarb Fortran friendpine baker-group McCammon
	Hybrid approaches: applying computational methods in cryo-electron microscopy. [My Copy] Current opinion in structural biology (30 March 2009) by Steffen Lindert, Phoebe L L. Stewart, Jens Meiler posted to cryo_em review by barry to the group structural_bioinformatics on 2009-04-21 08:05:13 as along with 1 group McCammon
	Structural biology contributions to tyrosine kinase drug discovery [My Copy] Current Opinion in Cell Biology, Vol. 21, No. 2. (April 2009), pp. 280-287. by Sandra W. Cowan-Jacob, Henrik Möbitz, Doriano Fabbro posted to drug_design kinases review by barry to the group structural_bioinformatics on 2009-04-09 20:09:34 as along with 1 group McCammon
	The interplay of structural information and functional studies in kinase drug design: insights from BCR-Abl. [My Copy] Current opinion in cell biology, Vol. 21, No. 2. (April 2009), pp. 288-295. by M. J. Eck, P. W. Manley posted to drug_design kinases review by barry to the group structural_bioinformatics on 2009-04-09 19:57:53 as along with 1 group McCammon
	Is protein classification necessary? Toward alternative approaches to function annotation [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (5 June 2009), pp. 363-368. by Donald Petrey, Barry Honig posted to protein_annotation protein_function review by barry to the group structural_bioinformatics on 2009-03-11 20:25:50 as along with 8 people and 3 groups dfdong sconlan robfsouza davidalee sobolevnrm janasont idoerg fgibson Orengo Group Journal Picks baker-group Bioinformatics
	Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms. [My Copy] Molecular bioSystems, Vol. 5, No. 3. (March 2009), pp. 207-216. by C. J. Tsai, A. Del Sol, R. Nussinov posted to allosteric review by barry to the group structural_bioinformatics on 2009-03-08 02:37:43 as along with 4 people and 2 groups anuragsethi flbarroso sobolevnrm higueruelo McCammon baker-group
	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232. by Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, Ruth Nussinov posted to protein_protein review server by barry to the group structural_bioinformatics on 2009-03-04 04:46:11 as along with 12 people and 2 groups dfdong jinghu_fandm daforerog qluo SaraNasser mikaellund reyez diamantis apaydin semin renatomilani svozil McCammon Bioinformatics
	Mutation Patterns in the Human Genome: More Variable Than Expected [My Copy] PLoS Biol, Vol. 7, No. 2. (3 February 2009), e1000028. by Laurent Duret posted to genome review by barry to the group structural_bioinformatics on 2009-02-24 21:55:56 as along with 7 people and 1 group Garamonfok rdiaz leelarcombe idoerg aprasad djkt gjuggler Bioinformatics
	Network and graph analyses of folding free energy surfaces [My Copy] Current Opinion in Structural Biology In Protein-nucleic acid interactions/Folding and binding - Wei Yang and Gregory D Van Dyne/Mikael Oliveberg and Eugene I Shakhnovich, Vol. 16, No. 1. (February 2006), pp. 71-78. by Amedeo Caflisch posted to networks protein_folding review by barry to the group structural_bioinformatics on 2009-02-09 19:38:29 as along with 5 people apaydin bilab mtw jlh64 Diego_Prada
	Proteins as networks: usefulness of graph theory in protein science. [My Copy] Current protein & peptide science, Vol. 9, No. 1. (February 2008), pp. 28-38. by A. Krishnan, J. P. Zbilut, M. Tomita, A. Giuliani posted to md_simulation networks protein_structure review by barry to the group structural_bioinformatics on 2009-02-09 18:43:51 as
	Principles of flexible protein-protein docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 73, No. 2. (2008), pp. 271-289. by Nelly Andrusier, Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson posted to docking flexible protein review by csrocha to the group structural_bioinformatics on 2008-11-10 18:05:05 as along with 3 people bicko aqeel LamBras
	Structural insights into G-protein-coupled receptor activation☆ [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 6. (25 December 2008), pp. 734-740. by W. Weis, B. Kobilka posted to gpcr review by barry to the group structural_bioinformatics on 2008-11-07 01:19:41 as along with 2 people and 1 group anna_yershova priyaps McCammon
	Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204. by Duncan Hull, Steve R. Pettifer, Douglas B. Kell posted to classic data_integration review by chad_davis to the group structural_bioinformatics on 2008-10-31 08:58:42 as along with 206 people and 18 groups cgl colombet hughesro gbouma welliegirl suribe mordiano operon Horduna cyrille IgorP sachingarg claudiushauptmann ianturton tech4trainers radagabriel mfenner jalonsoarevalo StemCellWorkstation martica840527 agbiotec LinaMelo claudine acabezas aaltenburger sarelfa Anita13 Dannycoutinho tmar lucybuykx ltitodem dcombe christianholz schoeband dgovoni maren antonkratz mzkbnt girabbit mawds tlb56 sstose klexa n00c slr52 jandot applebyb timhubbard yangjustinc CameronNeylon heliopais sarabatts aldra Prlwrlczkwsky CPAP amyfyn vellino ulrichs malkav30 cristiangutierrez rockrescue victorantoniomtz Tita NancyAbigail Nembrod jclau clarabermudez tanyacovi6 jmohan polivares artaban421 nperoni eudominguezmartin nhoussos MARCOUNAM carelcad euanlawson furlong stevepettifer flipip23 virolog ZoeThomas pawelsobko tnhh kbkbk8 rickl nellapower mcentyre wujastyk beanformer msanchof2009 dmaweb bhengeveld jpgrolle wsumthai daforerog INK-SSCI-SCI quianominorleo tux2000 cogs AJCann robsyme anthrogeek lmichan sainsworth hkimura western4uk cybob10 kevinemamy akriesch williamgunn carlblesius Effie alhoori mikel_egana tilanka coldmeadow yas Tomste mseyfang fitzgeraldp2 fungal eduardod5 DavidG67 chenlc03 stempvoort lesikv jmueller17 sirexkat Koh akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 guhjy neils norris jago druvus emayorga GeeSharpMinor fgibson Zephyrus leonardo dullhunk Parenting 2.0 Dentistry Zotero en español Journal picks Health_Informatics Herramientas20 Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org eLearning in Leicester mgh-lcs NaCTeM MEHTRadiology Département Hypermédia - Master NET JLab BergmanLab McCammon Poverty Alleviation from Access to Knowledge Roswell Cancer Crosstalk
	Native state proline isomerization: an intrinsic molecular switch. [My Copy] Biochemistry, Vol. 42, No. 32. (19 August 2003), pp. 9515-9524. by A. H. Andreotti posted to cis_trans proline review by barry to the group structural_bioinformatics on 2008-10-11 04:47:18 as
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to correlated_mutations phylogeny protein_protein review by barry to the group structural_bioinformatics on 2008-10-02 20:24:17 as along with 8 people and 2 groups chica biomcgary qluo balicea grahamc fhsantanna marti sjcockell McCammon Bioinformatics
	Structural biology by NMR: structure, dynamics, and interactions. [My Copy] PLoS computational biology, Vol. 4, No. 9. (September 2008) by P. R. Markwick, T. Malliavin, M. Nilges posted to nmr protein_structure review by barry to the group structural_bioinformatics on 2008-10-02 20:04:45 as along with 8 people rph betainverse bmduggan pengchy raik ruvido zwang laurabailey
	Flexible ligand docking to multiple receptor conformations: a practical alternative. [My Copy] Current opinion in structural biology, Vol. 18, No. 2. (April 2008), pp. 178-184. by M. Totrov, R. Abagyan posted to docking md_simulation review by barry to the group structural_bioinformatics on 2008-10-02 19:48:14 as along with 3 people and 2 groups klexa oteri aqeel McCammon Bioinformatics
	The structure of protein evolution and the evolution of protein structure [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Richard A. Goldstein posted to fold_space protein_evolution protein_structure review by barry to the group structural_bioinformatics on 2008-10-02 19:46:30 as along with 5 people and 2 groups dfdong yuslinaz bpb zwang cmzmasek McCammon Bioinformatics
	Understanding mechanisms governing protein-protein interactions from synthetic binding interfaces [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Anthony A. Kossiakoff, Shohei Koide posted to protein_dynamics protein_protein review by barry to the group structural_bioinformatics on 2008-10-02 19:21:02 as along with 2 people and 2 groups grahamc paulschlesinger McCammon Bioinformatics
	Analyzing Protein Interaction Networks Using Structural Information [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008) by Christina Kiel, Pedro Beltrao, Luis Serrano posted to data_integration embl networks ppi proj_assembly proj_interprets review structure by chad_davis to the group structural_bioinformatics on 2008-09-17 16:51:19 as along with 11 people msuarezdiez flbarroso kshameer Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang
	Allostery: an illustrated definition for the 'second secret of life' [My Copy] Trends in biochemical sciences (13 August 2008) by Aron W W. Fenton posted to allosteric review by barry to the group structural_bioinformatics on 2008-08-23 20:39:33 as along with 1 person and 1 group ruvido McCammon
	A comparison of common programming languages used in bioinformatics [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 82. by Mathieu Fourment, Michael Gillings posted to programming review by barry to the group structural_bioinformatics on 2008-08-21 18:01:49 as along with 18 people and 1 group reyez antonkratz daforerog treangen natstreet nlapalu druvus jamselem dullhunk laughcry ibuch urgi sci91078 renatomilani xili03 phoenixzxl guhjy chad_davis Bioinformatics
	BIOCHEMISTRY: Metamorphic Proteins [My Copy] Science, Vol. 320, No. 5884. (27 June 2008), pp. 1725-1726. by Alexey G. Murzin posted to protein_dynamics protein_structure review by barry to the group structural_bioinformatics on 2008-07-07 23:55:32 as along with 1 person marck
	Transition networks for modeling the kinetics of conformational change in macromolecules [My Copy] Current Opinion in Structural Biology In Theory and simulation / Macromolecular assemblages, Vol. 18, No. 2. (April 2008), pp. 154-162. by Frank Noé, Stefan Fischer posted to protein_dynamics protein_structure review smd by barry to the group structural_bioinformatics on 2008-04-17 19:15:44 as along with 5 people and 2 groups Diego_Prada aqeel sobolevnrm paulschlesinger toerst baker-group McCammon
	Allostery: Absence of a Change in Shape Does Not Imply that Allostery Is Not at Play. [My Copy] J Mol Biol (29 February 2008) by Chung-Jung J. Tsai, Antonio Del Sol, Ruth Nussinov posted to allosteric protein_dynamics protein_structure review by barry to the group structural_bioinformatics on 2008-03-31 18:11:48 as along with 7 people and 2 groups pablocarb choonpeng cactus sobolevnrm CameronNeylon higueruelo cchang McCammon Chang group
	Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 17, No. 6. (December 2007), pp. 633-640. by Ivet Bahar, Chakra Chennubhotla, Dror Tobi posted to allosteric protein_dynamics protein_structure review by barry to the group structural_bioinformatics on 2007-12-04 22:56:25 as along with 10 people and 3 groups allmensch jrperillaj aqeel ruvido cactus sobolevnrm jennifermbui higueruelo LamBras jmccammon Bioinformatics baker-group McCammon
	Comparative Analysis of Protein Structure Alignments [My Copy] BMC Structural Biology, Vol. 7 (26 July 2007), 50. by Gabriele Mayr, Francisco S. Domingues, Peter Lackner posted to protein_structure review structure_comparison by barry to the group structural_bioinformatics on 2007-12-04 22:41:13 as along with 1 person bicko
	Correlated substitution analysis and the prediction of amino acid structural contacts [My Copy] Brief Bioinform (13 November 2007), bbm052. by David S. Horner, Walter Pirovano, Graziano Pesole posted to correlated_mutations review by barry to the group structural_bioinformatics on 2007-11-27 23:34:46 as along with 6 people and 2 groups mgomes qluo RebeccaHamer zwang sobolevnrm Lombardo_7 Bioinformatics baker-group
	A complex profile of protein elongation: translating chemical energy into molecular movement [My Copy] Structure, Vol. 4, No. 3. (March 1996), pp. 229-238. by Kenton Abel, Frances Jurnak posted to review ntpases g_proteins ef-tu by barry to the group structural_bioinformatics on 2007-09-20 23:01:17 as along with 1 group Bioinformatics
	A Ras by Any Other Name [My Copy] Mol. Cell. Biol., Vol. 21, No. 5. (1 March 2001), pp. 1441-1443. by Dafna Bar-Sagi posted to review ras by barry to the group structural_bioinformatics on 2007-09-20 00:03:36 as along with 1 group Bioinformatics
	The pathway to signal achievement [My Copy] Nature, Vol. 365, No. 6449. (28 October 1993), pp. 781-783. by Sean E. Egan, Robert A. Weinberg posted to review ras by barry to the group structural_bioinformatics on 2007-09-19 23:54:45 as along with 1 group Bioinformatics
	The Chemistry of Protein Catalysis [My Copy] Journal of Molecular Biology, Vol. 372, No. 5. (5 October 2007), pp. 1261-1277. by Gemma L. Holliday, Daniel E. Almonacid, John B. Mitchell, Janet M. Thornton posted to review catalytic_mechanism by barry to the group structural_bioinformatics on 2007-09-17 17:53:36 as along with 7 people and 1 group ucbcjbm cjeans zwang grottenolm jwm sim82 gemmalholliday Bioinformatics
	Keeping dry and crossing membranes. [My Copy] Nat Biotechnol, Vol. 22, No. 9. (September 2004), pp. 1081-1084. by A. Fernández posted to review dehydron by barry to the group structural_bioinformatics on 2007-09-13 19:06:23 as along with 1 person and 1 group BragilMassoud Bioinformatics
	Graph-based methods for analysing networks in cell biology. [My Copy] Briefings in bioinformatics, Vol. 7, No. 3. (1 September 2006), pp. 243-255. by Tero Aittokallio, Benno Schwikowski posted to review interaction_maps graph by barry to the group structural_bioinformatics on 2007-08-27 20:04:16 as along with 11 people and 1 group daforerog abhishek_tiwari svozil ajbattle cswinburne yaredo tmmurali aswin grahamc jmarcelino iris_2001 Bioinformatics
	Protein Flexibility and Mobility in Structure-Based Drug Design [My Copy] Frontiers in Drug Design & Discovery: Structure-Based Drug Design in the 21st Century (March 2007), pp. 455-476. by Aqeel Ahmed, Sina Kazemi, Holger Gohlke posted to review protein_structure protein_ligand protein_dynamics drug_design docking by barry to the group structural_bioinformatics on 2007-08-13 19:47:46 as along with 2 people and 1 group fl aqeel Bioinformatics
	Hydrogen bonding in globular proteins [My Copy] Progress in Biophysics and Molecular Biology, Vol. 44, No. 2. (1984), pp. 97-179. by E. N. Baker, R. E. Hubbard posted to review protein_structure hbond by barry to the group structural_bioinformatics on 2007-06-21 22:53:50 as along with 1 group Bioinformatics
	Supramolecular Structure and Dynamics Special Feature: Crystalline molecular machines: Encoding supramolecular dynamics into molecular structure [My Copy] PNAS, Vol. 102, No. 31. (2 August 2005), pp. 10771-10776. by Miguel A. Garcia-Garibay posted to superamolecular review by barry to the group structural_bioinformatics on 2007-05-09 00:07:02 as along with 1 person and 1 group Scis0000002 Bioinformatics
	AAA+ superfamily ATPases: common structure-diverse function [My Copy] Genes to Cells, Vol. 6, No. 7. (2001), pp. 575-597. by Teru Ogura, Anthony J. Wilkinson posted to review protein_structure dynein aaa by barry to the group structural_bioinformatics on 2007-04-13 23:27:10 as along with 1 group Bioinformatics
	Structure, function and evolution of multidomain proteins. [My Copy] Current opinion in structural biology, Vol. 14, No. 2. (April 2004), pp. 208-216. by Christine Vogel, Matthew Bashton, Nicola D. Kerrison, Cyrus Chothia, Sarah A. Teichmann posted to review protein_structure protein-function evolution domains by Einat to the group structural_bioinformatics on 2007-04-11 13:18:01 as along with 5 people wiedenhoeft dgront Schmidtc cjeans cmzmasek

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