Group: structural_bioinformatics - with tag secondary-structure [25 articles] Export

Recent papers posted by members of the structural_bioinformatics group with tag secondary-structure

	Occurrence of protein structure elements in conserved sequence regions [My Copy] BMC Structural Biology, Vol. 7, No. 1. (09 January 2007), 3. by Einat Sitbon, Shmuel Pietrokovski posted to superfunnel sequence-structure secondary-structure evolution by Einat to the group structural_bioinformatics on 2007-09-02 16:06:53 as along with 2 people dfdong pablocarb
	Protein secondary structure: entropy, correlations and prediction. [My Copy] Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1603-1611. by G. E. Crooks, S. E. Brenner posted to entropy local-interactions prediction secondary-structure by Einat to the group structural_bioinformatics on 2006-05-07 08:36:25 as along with 3 people dfdong zambujo analogAI
	Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds. [My Copy] Protein Sci, Vol. 1, No. 2. (February 1992), pp. 216-226. by J. Overington, D. Donnelly, M. S. Johnson, A. Sali, T. L. Blundell posted to folds prediction secondary-structure tertiary-structure by Einat to the group structural_bioinformatics on 2006-05-04 13:53:44 as along with 5 people gjuggler vavi bicko massivemayhem medic0747
	Is there a unifying mechanism for protein folding? [My Copy] Trends Biochem Sci, Vol. 28, No. 1. (January 2003), pp. 18-25. by V. Daggett, A. R. Fersht posted to folding folding_nucleation review secondary-structure by Einat to the group structural_bioinformatics on 2006-04-04 16:43:26 as along with 4 people dgront allmensch rabio mirzazadeh
	Patterns and conformations of commonly occurring supersecondary structures (basic motifs) in protein data bank. [My Copy] J Protein Chem, Vol. 15, No. 7. (October 1996), pp. 675-690. by Z. Sun, B. Jiang posted to motifs protein_structure secondary-structure by Einat to the group structural_bioinformatics on 2006-03-20 12:48:45 as along with 1 person dfdong
	Typical interaction patterns in alphabeta and betaalpha turn motifs. [My Copy] Protein Eng, Vol. 11, No. 7. (July 1998), pp. 505-522. by R. Wintjens, S. J. Wodak, M. Rooman posted to motifs protein_structure secondary-structure by Einat to the group structural_bioinformatics on 2006-03-20 12:31:46 as along with 1 person dfdong
	Local sequence-structure correlations in proteins. [My Copy] Curr Opin Biotechnol, Vol. 7, No. 4. (August 1996), pp. 417-421. by C. Bystroff, K. T. Simons, K. F. Han, D. Baker posted to conservation secondary-structure sequence-structure by Einat to the group structural_bioinformatics on 2006-02-16 14:53:29 as along with 1 person dgront
	Global properties of the mapping between local amino acid sequence and local structure in proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 93, No. 12. (11 June 1996), pp. 5814-5818. by K. F. Han, D. Baker posted to amino-acid-propensities msa secondary-structure transitions by Einat to the group structural_bioinformatics on 2006-01-02 18:13:07 as along with 1 person thaliana
	How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. [My Copy] J Mol Biol, Vol. 136, No. 3. (25 January 1980), pp. 225-270. by A. M. Lesk, C. Chothia posted to alpha-helix core evolution globin secondary-structure by Einat to the group structural_bioinformatics on 2005-12-28 10:22:08 as along with 1 person analogAI
	Side-chain entropy effects on protein secondary structure formation. [My Copy] Proteins, Vol. 62, No. 2. (1 February 2006), pp. 411-420. by Brian W W. Chellgren, Trevor P P. Creamer posted to alpha-helix beta-strand entropy flexibility folding secondary-structure by Einat to the group structural_bioinformatics on 2005-12-27 14:04:22 as
	Analysis of the relation between the sequence and secondary and three-dimensional structures of immunoglobulin molecules. [My Copy] Proc Natl Acad Sci U S A, Vol. 92, No. 24. (21 November 1995), pp. 10884-10888. by I. M. Gelfand, A. E. Kister posted to amino-acid-propensities conservation immunoglobulin secondary-structure by Einat to the group structural_bioinformatics on 2005-12-18 09:34:27 as
	Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins. [My Copy] Proteins, Vol. 54, No. 2. (1 February 2004), pp. 282-288. by M. Kuhn, J. Meiler, D. Baker posted to loop-strand secondary-structure turn by Einat to the group structural_bioinformatics on 2005-12-11 16:35:23 as along with 1 person dfdong
	Symmetric Connectivity of Secondary Structure Elements Enhances the Diversity of Folding Pathways. [My Copy] J Mol Biol (29 September 2005) by Dmitri K K. Klimov, D Thirumalai posted to folding secondary-structure topology by Einat to the group structural_bioinformatics on 2005-10-17 11:43:37 as along with 1 person dfdong
	Computational methods for protein secondary structure prediction using multiple sequence alignments. [My Copy] Curr Protein Pept Sci, Vol. 1, No. 3. (November 2000), pp. 273-301. by J. Heringa posted to prediction secondary-structure by Einat to the group structural_bioinformatics on 2005-10-07 10:41:30 as
	Conformation of polypeptides and proteins. [My Copy] Adv Protein Chem, Vol. 23 (1968), pp. 283-438. by G. N. Ramachandran, V. Sasisekharan posted to ramachandran secondary-structure by Einat to the group structural_bioinformatics on 2005-09-29 14:38:36 as
	Secondary Structure in Protein Analysis [My Copy] In Encyclopedia of Biological Chemistry (October 2004), pp. 1-6. by George D. Rose edited by William J. Lennarz, Daniel M. Lane posted to alpha-helix beta-strand conformation loops ramachandran secondary-structure turn by Einat to the group structural_bioinformatics on 2005-09-29 10:39:15 as
	A thermodynamic scale for the beta-sheet forming tendencies of the amino acids. [My Copy] Biochemistry, Vol. 33, No. 18. (10 May 1994), pp. 5510-5517. by C. K. Smith, J. M. Withka, L. Regan posted to beta-strand propensities secondary-structure by Einat to the group structural_bioinformatics on 2005-09-29 08:33:51 as
	New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification. [My Copy] J Mol Biol, Vol. 289, No. 5. (25 June 1999), pp. 1469-1490. by J. Wojcik, J. P. Mornon, J. Chomilier posted to conformation loops ramachandran secondary-structure by Einat to the group structural_bioinformatics on 2005-09-28 14:03:50 as along with 1 person thamelry
	Local propensities and statistical potentials of backbone dihedral angles in proteins. [My Copy] J Mol Biol, Vol. 342, No. 2. (10 September 2004), pp. 635-649. by M. R. Betancourt, J. Skolnick posted to alpha-helix beta-strand beta_flexibility loops propensities secondary-structure by Einat to the group structural_bioinformatics on 2005-09-27 13:22:08 as along with 2 people j3xucite dgront
	Propensity of amino acids in loop regions connecting beta-strands. [My Copy] Protein Pept Lett, Vol. 12, No. 4. (May 2005), pp. 379-382. by Z. Minuchehr, B. Goliaei posted to loops secondary-structure by Einat to the group structural_bioinformatics on 2005-09-26 14:45:36 as
	Side-chain entropy opposes alpha-helix formation but rationalizes experimentally determined helix-forming propensities. [My Copy] Proc Natl Acad Sci U S A, Vol. 89, No. 13. (1 July 1992), pp. 5937-5941. by T. P. Creamer, G. D. Rose posted to alpha-helix folding secondary-structure by Einat to the group structural_bioinformatics on 2005-09-26 10:27:53 as
	Amino acid intrinsic alpha-helical propensities III: positional dependence at several positions of C terminus. [My Copy] Protein Sci, Vol. 11, No. 4. (April 2002), pp. 766-777. by M. Petukhov, K. Uegaki, N. Yumoto, L. Serrano posted to alpha-helix amino-acid-propensities secondary-structure by Einat to the group structural_bioinformatics on 2005-09-25 15:40:02 as
	Revisiting the Ramachandran plot: hard-sphere repulsion, electrostatics, and H-bonding in the alpha-helix. [My Copy] Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2508-2522. by B. K. Ho, A. Thomas, R. Brasseur posted to alpha-helix secondary-structure by Einat to the group structural_bioinformatics on 2005-09-25 15:31:20 as along with 3 people Diego_Prada aqeel allmensch
	Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales. [My Copy] Proteins, Vol. 20, No. 4. (December 1994), pp. 301-311. by V. Muñoz, L. Serrano posted to folding secondary-structure by Einat to the group structural_bioinformatics on 2005-09-25 15:05:42 as
	A physical basis for protein secondary structure. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 25. (7 December 1999), pp. 14258-14263. by R. Srinivasan, G. D. Rose posted to secondary-structure by Einat to the group structural_bioinformatics on 2005-09-22 12:41:03 as along with 2 people saunders Diego_Prada

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alpha-helix	12
folding	11
post-defense	10
predictions	9
prediction	8
loops	7
amino-acid-propensities	6
beta-strand	6
protein_structure	5
chou-fasman	4
conservation	4
entropy	4
evolution	4
motifs	4
propensities	4
ramachandran	4
sequence-structure	4
conformation	3
need-pdf	3
protein-structure	3
beta_flexibility	2
core	2
flexibility	2
folding_nucleation	2
folds	2
globin	2
gor	2
immunoglobulin	2
local-interactions	2
loop-strand	2
msa	2
protein	2
review	2
rna	2
superfunnel	2
tertiary-structure	2
topology	2
transitions	2
turn	2
arob	1
coarse-graining	1
contactmap	1
database	1
design	1
domain-prediction	1
dssp	1
free-energy	1
interactions	1
knots	1
membrane	1
modeling	1
molecular_beacon	1
neural-network	1
nmr	1
oligo	1
potential	1
proteomics	1
psipred	1
residue-residue	1
stride	1
structural_alignment	1
supersecondary	1

Group: structural_bioinformatics - with tag secondary-structure [25 articles] Export

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