Group: beta - library 246 articles Export

	Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes [My Copy] Nucl. Acids Res., Vol. 24, No. 22. (15 November 1996), pp. 4501-4505. by N. Sugimoto, S. Nakano, M. Yoneyama, K. Honda posted to parameters_rna_dna by Hosna to the group beta on 2009-05-24 16:57:16 as
	Thermodynamic Parameters To Predict Stability of RNA/DNA Hybrid Duplexes [My Copy] Biochemistry, Vol. 34, No. 35. (1 September 1995), pp. 11211-11216. by Naoki Sugimoto, Shu-Ichi Nakano, Misa Katoh, et al.Akiko Matsumura, Hiroyuki Nakamuta, Tatsuo Ohmichi, Mari Yoneyama, Muneo Sasaki posted to parameters_rna_dna by Hosna to the group beta on 2009-05-24 16:53:43 as
	Efficient siRNA selection using hybridization thermodynamics. [My Copy] Nucleic Acids Res, Vol. 36, No. 2. (February 2008), pp. 640-647. by Z. J. Lu, D. H. Mathews posted to rna-rna rnai by Hosna to the group beta on 2008-12-29 02:19:23 as along with 3 people puranjoy_b mtagaya guhjy
	OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics. [My Copy] Nucleic acids research (19 May 2008) by Zhi John J. Lu, David H H. Mathews posted to rna-rna by Hosna to the group beta on 2008-12-23 00:41:36 as along with 1 person guhjy
	Predicting transmembrane beta-barrels and interstrand residue interactions from sequence [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 1. (2006), pp. 61-74. by J. Waldispühl, Bonnie Berger, Peter Clote, Jean-Marc Steyaert posted to protein supersecondary_structure by Hosna to the group beta on 2008-10-22 23:40:17 as
	Predicting novel RNA-RNA interactions. [My Copy] Current opinion in structural biology (14 May 2008) by Irmtraud M M. Meyer posted to rna-rna secondary_structure_prediction by Hosna to the group beta on 2008-10-22 22:48:12 as along with 2 people zwang marck
	Efficient parameter estimation for RNA secondary structure prediction [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i19-28. by Mirela Andronescu, Anne Condon, Holger H. Hoos, David H. Mathews, Kevin P. Murphy posted to estimation parameter by Hosna to the group beta on 2007-12-19 19:44:23 as along with 1 person and 1 group ellarond Bioinformatics
	An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots [My Copy] Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 58-66. by J. Ruan, G. D. Stormo, W. Zhang posted to preduction heuristic by condon to the group beta on 2007-07-07 15:35:46 as along with 4 people heliopais evaf arcticrasta Hosna
	Gideon, a program for design of structural dna nanotechnology [My Copy] (2006) by Jeffrey J. Birac posted to design by condon to the group beta on 2007-06-28 04:26:29 as
	A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure [My Copy] BMC Bioinformatics, Vol. 3, No. 1. (2 July 2002), 18. by S. R. Eddy posted to rna covariance by vwchan to the group beta on 2007-05-29 22:58:37 as along with 4 people and 2 groups rb_india evaf marcius mtagaya BioinfoCIPF SGU-CIPF
	Query-Dependent Banding (QDB) for Faster RNA Similarity Searches [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e56. by Eric P. Nawrocki, Sean R. Eddy posted to rna covariance by vwchan to the group beta on 2007-05-23 09:42:12 as
	Predicting RNA pseudoknot folding thermodynamics [My Copy] Nucleic Acids Research, Vol. 34, No. 9. (2006), pp. 2634-2652. by Song Cao, Shi J. Chen posted to rna pseudoknot energy-model by condon to the group beta on 2007-05-08 14:18:12 as along with 1 person Kiarostami
	On the computational power of iterative auctions [My Copy] In EC '05: Proceedings of the 6th ACM conference on Electronic commerce (2005), pp. 29-43. by Liad Blumrosen, Noam Nisan posted to combinatorial-auctions by condon to the group beta on 2007-05-07 21:17:08 as
	Moments of the Boltzmann distribution for RNA secondary structures [My Copy] Bulletin of Mathematical Biology, Vol. 67, No. 5. (2005), pp. 1031-1047. by István Miklós, Irmtraud M. Meyer, Borbála Nagy posted to structure rna partition-function by condon to the group beta on 2007-05-07 21:14:27 as along with 1 person raylim
	MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes [My Copy] BMC Bioinformatics, Vol. 8 (16 March 2007), 97. by Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, Zhen-Su She posted to phage-genes by vwchan to the group beta on 2007-04-18 21:36:35 as
	Does common architecture reveal a viral lineage spanning all three domains of life? [My Copy] Mol Cell, Vol. 16, No. 5. (3 December 2004), pp. 673-685. by S. D. Benson, J. K. Bamford, D. H. Bamford, R. M. Burnett posted to phage classification by vwchan to the group beta on 2007-04-05 21:03:04 as
	Bacteriophage taxonomy in 1987. [My Copy] Microbiol Sci, Vol. 4, No. 7. (July 1987), pp. 214-218. by H. W. Ackermann posted to phage classification by vwchan to the group beta on 2007-04-05 20:55:04 as
	Guidelines for bacteriophage characterization. [My Copy] Adv Virus Res, Vol. 23 (1978), pp. 1-24. by H. W. Ackermann, A. Audurier, L. Berthiaume, L. A. Jones, J. A. Mayo, A. K. Vidaver posted to phage classification by vwchan to the group beta on 2007-04-05 20:50:01 as
	Opinion: Viral metagenomics [My Copy] Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 504-510. by Robert A. Edwards, Forest Rohwer posted to phage classification by vwchan to the group beta on 2007-04-05 20:42:07 as along with 4 people dayjm AaronDarling bluto mcox
	Family relationships: should consensus reign?--consensus clustering for protein families. [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007) by M. Nikolski, D. J. Sherman posted to protein clustering alignment by vwchan to the group beta on 2007-04-01 21:33:54 as
	G-ribo: A new structural motif in ribosomal RNA [My Copy] RNA, Vol. 13, No. 4. (1 April 2007), pp. 549-554. by Sergey V. Steinberg, Yury I. Boutorine posted to tertiary structure rna by condon to the group beta on 2007-03-23 23:50:17 as
	RNA SHAPE Chemistry Reveals Nonhierarchical Interactions Dominate Equilibrium Structural Transitions in tRNAAsp Transcripts [My Copy] Journal of the American Chemical Society, Vol. 127, No. 13. (1 April 2005), pp. 4659-4667. by K. A. Wilkinson, E. J. Merino, K. M. Weeks posted to tertiary structure rna hierarchical by condon to the group beta on 2007-03-23 23:22:31 as along with 1 person Hosna
	RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE). [My Copy] J Am Chem Soc, Vol. 127, No. 12. (30 March 2005), pp. 4223-4231. by E. J. Merino, K. A. Wilkinson, J. L. Coughlan, K. M. Weeks posted to tertiary structure rna by condon to the group beta on 2007-03-23 23:19:39 as along with 1 person eckart_bindewald
	A method for aligning RNA secondary structures and its application to RNA motif detection. [My Copy] BMC bioinformatics, Vol. 6 (2005) by J. Liu, J. T. Wang, J. Hu, B. Tian posted to rna alignment by vwchan to the group beta on 2007-02-01 12:38:57 as along with 2 people arcticrasta emidio_capriotti
	A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation [My Copy] Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. 4912-4924. by Lu, Zhi John, Turner, H. Douglas, Mathews, H. David posted to rna energy-parameters by condon to the group beta on 2007-01-29 15:37:09 as
	Detecting overlapping coding sequences in virus genomes. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (16 February 2006) by Andrew E. Firth, Chris M. Brown posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:53:17 as along with 1 person Ayest
	On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer [My Copy] BMC Evolutionary Biology, Vol. 6 (16 August 2006), 63. by Yanbin Yin, Daniel Fischer posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:46:58 as along with 1 person johanviklund
	Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome [My Copy] BMC Genomics, Vol. 7, No. 1. (13 June 2006), 150. by Vasily T. Tcherepanov, Angelika Ehlers, Chris Upton posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:43:59 as along with 1 person druvus
	GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. [My Copy] Nucleic Acids Res, Vol. 29, No. 12. (15 June 2001), pp. 2607-2618. by J. Besemer, A. Lomsadze, M. Borodovsky posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:38:11 as along with 5 people min013 jmartin49 dakelley azazello wenhan
	ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by F. B. Guo, C. T. Zhang posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:30:57 as
	Recoding in bacteriophages and bacterial IS elements. [My Copy] Trends Genet, Vol. 22, No. 3. (March 2006), pp. 174-181. by P. V. Baranov, O. Fayet, R. W. Hendrix, J. F. Atkins posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:24:06 as
	Bacteriophages and pathogenicity: more than just providing a toxin? [My Copy] Microbes Infect, Vol. 8, No. 5. (April 2006), pp. 1365-1371. by C. R. Tinsley, E. Bille, X. Nassif posted to review phage by vwchan to the group beta on 2007-01-21 19:09:28 as along with 1 person pibm
	Distribution of prophages and SGI-1 antibiotic-resistance genes among different Salmonella enterica serovar Typhimurium isolates. [My Copy] Microbiology, Vol. 152, No. Pt 7. (July 2006), pp. 2137-2147. by A. P. Hermans, A. M. Beuling, A. H. van Hoek, H. J. Aarts, T. Abee, M. H. Zwietering posted to prophage phage antibiotic_resistance by vwchan to the group beta on 2007-01-21 18:51:59 as
	Truth revelation in approximately efficient combinatorial auctions [My Copy] J. ACM, Vol. 49, No. 5. (September 2002), pp. 577-602. by Daniel Lehmann, Liadan I. O&\#263;allaghan, Yoav Shoham posted to combinatorial-auctions by condon to the group beta on 2006-11-20 04:27:28 as
	Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences. [My Copy] In Silico Biol, Vol. 6, No. 3. (15 April 2006) by Michael Bose, Robert D. Barber posted to prediction prophage by vwchan to the group beta on 2006-11-15 00:11:27 as
	Information resources at the National Center for Biotechnology Information. [My Copy] Bull Med Libr Assoc, Vol. 81, No. 3. (July 1993), pp. 282-284. by R. M. Woodsmall, D. A. Benson posted to database by vwchan to the group beta on 2006-11-14 16:46:41 as
	First blueprint, now bricks: DNA as construction material on the nanoscale. [My Copy] Chemical Society reviews, Vol. 35, No. 11. (November 2006), pp. 1111-1121. by S. Pitchiaya, Y. Krishnan posted to dna nanotechnology review by condon to the group beta on 2006-11-11 19:29:02 as along with 3 people BjoernAlbrecht stsaft dna
	Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence. [My Copy] Nucleic Acids Res, Vol. 8, No. 10. (24 May 1980), pp. 2275-2293. by C. R. Woese, L. J. Magrum, R. Gupta, et al.R. B. Siegel, D. A. Stahl, J. Kop, N. Crawford, J. Brosius, R. Gutell, J. J. Hogan, H. F. Noller posted to classic comparative rna by condon to the group beta on 2006-11-11 18:19:54 as along with 2 people eckart_bindewald mcox
	Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences. [My Copy] Nucleic Acids Res (24 October 2006) by Derrick E. Fouts posted to lateral_gene_transfer phage prediction prophage trna by vwchan to the group beta on 2006-11-03 22:13:11 as
	Distribution of minigenes in the bacteriophage lambda chromosome. [My Copy] Gene, Vol. 329 (31 March 2004), pp. 115-124. by N. A. Oviedo, H. Salgado, J. Collado-Vides, G. Guarneros posted to phage phage-genes by vwchan to the group beta on 2006-11-03 01:15:37 as along with 1 person discreteonyxorb
	Unusual structure of the attB site of the site-specific recombination system of Lactobacillus delbrueckii bacteriophage mv4. [My Copy] J Bacteriol, Vol. 181, No. 23. (December 1999), pp. 7385-7389. by F. Auvray, M. Coddeville, R. C. Ordonez, P. Ritzenthaler posted to insertion-site trna by vwchan to the group beta on 2006-11-03 01:12:14 as
	A proline tRNA(CGG) gene encompassing the attachment site of temperate phage 16-3 is functional and convertible to suppressor tRNA. [My Copy] Mol Microbiol, Vol. 54, No. 3. (November 2004), pp. 742-754. by B. Blaha, S. Semsey, S. Ferenczi, Z. Csiszovszki, P. P. Papp, L. Orosz posted to insertion-site phage trna by vwchan to the group beta on 2006-11-03 01:08:24 as
	Impact of forced selection of tRNAs on HIV-1 replication and genome stability highlight preferences for selection of certain tRNAs. [My Copy] Virus Res (27 October 2006) by Na Ni, Casey D. Morrow posted to trna by vwchan to the group beta on 2006-11-03 01:05:55 as
	Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis. [My Copy] Appl Environ Microbiol, Vol. 71, No. 12. (December 2005), pp. 8692-8705. by M. Ventura, J. H. Lee, C. Canchaya, et al.R. Zink, S. Leahy, J. A. Moreno-Munoz, M. O'Connell-Motherway, D. Higgins, G. F. Fitzgerald, D. J. O'Sullivan, D. van Sinderen posted to integration lateral_gene_transfer prophage by vwchan to the group beta on 2006-11-03 00:54:57 as
	A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1alpha. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15380-15385. by P. J. Keeling, Y. Inagaki posted to lateral_gene_transfer by vwchan to the group beta on 2006-11-03 00:51:04 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Repetitive elements in genomes of parasitic protozoa. [My Copy] Microbiol Mol Biol Rev, Vol. 67, No. 3. (September 2003) by B. Wickstead, K. Ersfeld, K. Gull posted to boundary review by vwchan to the group beta on 2006-11-03 00:43:15 as
	Gene transfer: gene swapping craze reaches eukaryotes. [My Copy] Curr Biol, Vol. 13, No. 2. (21 January 2003) by J. P. Gogarten posted to lateral_gene_transfer by vwchan to the group beta on 2006-11-02 23:53:46 as along with 1 person karfunkel
	Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach. [My Copy] Genome Biol, Vol. 4, No. 6. (2003) by E. H. Scholl, J. L. Thorne, J. P. Mccarter, D. M. Bird posted to lateral_gene_transfer prediction by vwchan to the group beta on 2006-11-02 23:44:22 as
	Predicting RNA pseudoknot folding thermodynamics [My Copy] Nucleic Acids Research, Vol. 34, No. 9. (2006), pp. 2634-2652. by Song Cao, Shi-Jie Chen posted to energy-model pseudoknot rna by condon to the group beta on 2006-10-31 21:49:48 as along with 5 people gzm55 Hosna apop physics Kiarostami
	RNA Structure Prediction Including Pseudoknots Based on Stochastic Multiple Context-Free Grammar [My Copy] Workshop on Probabilistic Modeling and Machine Learning in Structural and Systems Biology (2006) by Yuki Kato, Hiroyuki Seki, Tadao Kasami posted to rna tags by condon to the group beta on 2006-10-27 17:46:08 as

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rna	114
structure	65
review	33
pseudoknots	31
phage	28
prediction	20
dnf	18
lateral_gene_transfer	18
tertiary	16
prophage	14
database	12
dna	12
energy-model	11
insertion-site	10
trna	10
island	8
phage-genes	8
folding-pathways	6
integration	6
design	5
energy-landscapes	5
classification	4
computational-experimental	4
covariance	4
folding	4
hierarchical-model	4
integrase	4
condon	3
nanotechnology	3
pcp	3
rna-rna	3
algebraic-dynamic-programming	2
alignment	2
boundary	2
combinatorial-auctions	2
dynamic-programming	2
experimental	2
hierarchical	2
np	2
nucleotide	2
parameters_rna_dna	2
partition	2
protein	2
pseudoknot	2
self-assembly	2
tags	2
visualization	2
101	1
antibiotic_resistance	1
biology	1
biosensor	1
classic	1
clustering	1
codon	1
comparative	1
complexes	1
co-transcriptional-folding	1
designed	1
discovery	1
dna-protein-interaction	1
energy-parameters	1
enzymes	1
estimation	1
heuristic	1
in-vitro-selection	1
iupac-code	1
lattices	1
mechanics	1
multistable	1
oligo-design	1
parameter	1
partition-function	1
phylogeny-model	1
precition	1
preduction	1
ribozymes	1
rna-alignment	1
rnai	1
scfgs	1
secondary_structure_prediction	1
shapes	1
supersecondary_structure	1
switch	1
trna-like	1

Group: beta - library 246 articles Export

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