Register | Log in | FAQ      [?] 
Recent | Recommended | Search | Authors | Tags | Export

Group: beta - library [240 articles]

Recent papers posted by members of the beta group
  • Efficient parameter estimation for RNA secondary structure prediction.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by Mirela Andronescu, Anne Condon, Holger H H Hoos, David H H Mathews, Kevin P P Murphy
    posted to estimation parameter by Hosna to the group beta on 2007-12-19 19:44:23 as *** along with 1 group Bioinformatics
  • An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 58-66.
    by J Ruan, GD Stormo, W Zhang
    posted to preduction heuristic by condon to the group beta on 2007-07-07 15:35:46 as ** along with 3 people evaf arcticrasta Hosna
  • Gideon, a program for design of structural dna nanotechnology
    (2006)
    by Jeffrey J Birac
    posted to design by condon to the group beta on 2007-06-28 04:26:29 as **
  • A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.
    BMC Bioinformatics, Vol. 3, No. 1. (2 July 2002)
    by SR Eddy
    posted to rna covariance by vwchan to the group beta on 2007-05-29 22:58:37 as ** along with 3 people and 2 groups evaf marcius mtagaya BioinfoCIPF SGU-CIPF
  • Query-Dependent Banding (QDB) for Faster RNA Similarity Searches
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e56.
    by Eric P Nawrocki, Sean R Eddy
    posted to rna covariance by vwchan to the group beta on 2007-05-23 09:42:12 as **
  • Predicting RNA pseudoknot folding thermodynamics
    Nucleic Acids Research, Vol. 34, No. 9. (2006), pp. 2634-2652.
    by Song Cao, Shi J Chen
    posted to rna pseudoknot energy-model by condon to the group beta on 2007-05-08 14:18:12 as ** along with 1 person Kiarostami
  • On the computational power of iterative auctions
    (2005), pp. 29-43.
    by Liad Blumrosen, Noam Nisan
    posted to combinatorial-auctions by condon to the group beta on 2007-05-07 21:17:08 as **
  • Moments of the Boltzmann distribution for RNA secondary structures
    Bulletin of Mathematical Biology, Vol. 67, No. 5. (2005), pp. 1031-1047.
    by István Miklós, Irmtraud M Meyer, Borbála Nagy
    posted to structure rna partition-function by condon to the group beta on 2007-05-07 21:14:27 as ** along with 1 person raylim
  • MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
    BMC Bioinformatics, Vol. 8 (16 March 2007), 97.
    by Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, Zhen-Su She
    posted to phage-genes by vwchan to the group beta on 2007-04-18 21:36:35 as **
  • Does common architecture reveal a viral lineage spanning all three domains of life?
    Mol Cell, Vol. 16, No. 5. (3 December 2004), pp. 673-685.
    by SD Benson, JK Bamford, DH Bamford, RM Burnett
    posted to phage classification by vwchan to the group beta on 2007-04-05 21:03:04 as **
  • Bacteriophage taxonomy in 1987.
    Microbiol Sci, Vol. 4, No. 7. (July 1987), pp. 214-218.
    by HW Ackermann
    posted to phage classification by vwchan to the group beta on 2007-04-05 20:55:04 as **
  • Guidelines for bacteriophage characterization.
    Adv Virus Res, Vol. 23 (1978), pp. 1-24.
    by HW Ackermann, A Audurier, L Berthiaume, LA Jones, JA Mayo, AK Vidaver
    posted to phage classification by vwchan to the group beta on 2007-04-05 20:50:01 as **
  • Opinion: Viral metagenomics
    Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 504-510.
    by Robert A Edwards, Forest Rohwer
    posted to phage classification by vwchan to the group beta on 2007-04-05 20:42:07 as ** along with 4 people mcox dayjm AaronDarling bluto
  • Family relationships: should consensus reign?--consensus clustering for protein families.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by M Nikolski, DJ Sherman
    posted to protein clustering alignment by vwchan to the group beta on 2007-04-01 21:33:54 as **
  • G-ribo: A new structural motif in ribosomal RNA
    RNA, Vol. 13, No. 4. (1 April 2007), pp. 549-554.
    by Sergey V Steinberg, Yury I Boutorine
    posted to tertiary structure rna by condon to the group beta on 2007-03-23 23:50:17 as **
  • RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts.
    J Am Chem Soc, Vol. 127, No. 13. (6 April 2005), pp. 4659-4667.
    by KA Wilkinson, EJ Merino, KM Weeks
    posted to tertiary structure rna hierarchical by condon to the group beta on 2007-03-23 23:22:31 as **
  • RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE).
    J Am Chem Soc, Vol. 127, No. 12. (30 March 2005), pp. 4223-4231.
    by EJ Merino, KA Wilkinson, JL Coughlan, KM Weeks
    posted to tertiary structure rna by condon to the group beta on 2007-03-23 23:19:39 as ** along with 1 person eckart_bindewald
  • A method for aligning RNA secondary structures and its application to RNA motif detection.
    BMC Bioinformatics, Vol. 6 (2005)
    by J Liu, JT Wang, J Hu, B Tian
    posted to rna alignment by vwchan to the group beta on 2007-02-01 12:38:57 as ** along with 2 people arcticrasta emidio_capriotti
  • A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation
    Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. 4912-4924.
    by Lu, Zhi John, Turner, H Douglas, Mathews, H David
    posted to rna energy-parameters by condon to the group beta on 2007-01-29 15:37:09 as **
  • Detecting overlapping coding sequences in virus genomes.
    BMC Bioinformatics, Vol. 7, No. 1. (16 February 2006)
    by Andrew E Firth, Chris M Brown
    posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:53:17 as ** along with 1 person Ayest
  • On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer
    BMC Evolutionary Biology, Vol. 6 (16 August 2006), 63.
    by Yanbin Yin, Daniel Fischer
    posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:46:58 as **
  • Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome
    BMC Genomics, Vol. 7 (13 June 2006), 150.
    by Vasily T Tcherepanov, Angelika Ehlers, Chris Upton
    posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:43:59 as **
  • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
    Nucleic Acids Res, Vol. 29, No. 12. (15 June 2001), pp. 2607-2618.
    by J Besemer, A Lomsadze, M Borodovsky
    posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:38:11 as ** along with 2 people azazello wenhan
  • ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes.
    BMC Bioinformatics, Vol. 7 (2006)
    by FB Guo, CT Zhang
    posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:30:57 as **
  • Recoding in bacteriophages and bacterial IS elements.
    Trends Genet, Vol. 22, No. 3. (March 2006), pp. 174-181.
    by PV Baranov, O Fayet, RW Hendrix, JF Atkins
    posted to phage-genes phage by vwchan to the group beta on 2007-01-26 00:24:06 as **
  • Bacteriophages and pathogenicity: more than just providing a toxin?
    Microbes Infect, Vol. 8, No. 5. (April 2006), pp. 1365-1371.
    by CR Tinsley, E Bille, X Nassif
    posted to review phage by vwchan to the group beta on 2007-01-21 19:09:28 as ****
  • Distribution of prophages and SGI-1 antibiotic-resistance genes among different Salmonella enterica serovar Typhimurium isolates.
    Microbiology, Vol. 152, No. Pt 7. (July 2006), pp. 2137-2147.
    by AP Hermans, AM Beuling, AH van Hoek, HJ Aarts, T Abee, MH Zwietering
    posted to prophage phage antibiotic_resistance by vwchan to the group beta on 2007-01-21 18:51:59 as **
  • Truth revelation in approximately efficient combinatorial auctions
    J. ACM, Vol. 49, No. 5. (September 2002), pp. 577-602.
    by Daniel Lehmann, Liadan I O&\#263;allaghan, Yoav Shoham
    posted to combinatorial-auctions by condon to the group beta on 2006-11-20 04:27:28 as **
  • Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences.
    In Silico Biol, Vol. 6, No. 3. (15 April 2006)
    by Michael Bose, Robert D Barber
    posted to prediction prophage by vwchan to the group beta on 2006-11-15 00:11:27 as **
  • Information resources at the National Center for Biotechnology Information.
    Bull Med Libr Assoc, Vol. 81, No. 3. (July 1993), pp. 282-284.
    by RM Woodsmall, DA Benson
    posted to database by vwchan to the group beta on 2006-11-14 16:46:41 as **
  • First blueprint, now bricks: DNA as construction material on the nanoscale.
    Chem Soc Rev, Vol. 35, No. 11. (November 2006), pp. 1111-1121.
    by S Pitchiaya, Y Krishnan
    posted to dna nanotechnology review by condon to the group beta on 2006-11-11 19:29:02 as ** along with 2 people stsaft dna
  • Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence.
    Nucleic Acids Res, Vol. 8, No. 10. (24 May 1980), pp. 2275-2293.
    by CR Woese, LJ Magrum, R Gupta, RB Siegel, DA Stahl, J Kop, N Crawford, J Brosius, R Gutell, JJ Hogan, HF Noller
    posted to classic comparative rna by condon to the group beta on 2006-11-11 18:19:54 as ** along with 2 people mcox eckart_bindewald
  • Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences.
    Nucleic Acids Res (24 October 2006)
    by Derrick E Fouts
    posted to lateral_gene_transfer phage prediction prophage trna by vwchan to the group beta on 2006-11-03 22:13:11 as *****
  • Distribution of minigenes in the bacteriophage lambda chromosome.
    Gene, Vol. 329 (31 March 2004), pp. 115-124.
    by NA Oviedo, H Salgado, J Collado-Vides, G Guarneros
    posted to phage phage-genes by vwchan to the group beta on 2006-11-03 01:15:37 as ** along with 1 person discreteonyxorb
  • Unusual structure of the attB site of the site-specific recombination system of Lactobacillus delbrueckii bacteriophage mv4.
    J Bacteriol, Vol. 181, No. 23. (December 1999), pp. 7385-7389.
    by F Auvray, M Coddeville, RC Ordonez, P Ritzenthaler
    posted to insertion-site trna by vwchan to the group beta on 2006-11-03 01:12:14 as **
  • A proline tRNA(CGG) gene encompassing the attachment site of temperate phage 16-3 is functional and convertible to suppressor tRNA.
    Mol Microbiol, Vol. 54, No. 3. (November 2004), pp. 742-754.
    by B Blaha, S Semsey, S Ferenczi, Z Csiszovszki, PP Papp, L Orosz
    posted to insertion-site phage trna by vwchan to the group beta on 2006-11-03 01:08:24 as **
  • Impact of forced selection of tRNAs on HIV-1 replication and genome stability highlight preferences for selection of certain tRNAs.
    Virus Res (27 October 2006)
    by Na Ni, Casey D Morrow
    posted to trna by vwchan to the group beta on 2006-11-03 01:05:55 as **
  • Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis.
    Appl Environ Microbiol, Vol. 71, No. 12. (December 2005), pp. 8692-8705.
    by M Ventura, JH Lee, C Canchaya, R Zink, S Leahy, JA Moreno-Munoz, M O'Connell-Motherway, D Higgins, GF Fitzgerald, DJ O'Sullivan, D van Sinderen
    posted to integration lateral_gene_transfer prophage by vwchan to the group beta on 2006-11-03 00:54:57 as ***
  • A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1alpha.
    Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15380-15385.
    by PJ Keeling, Y Inagaki
    posted to lateral_gene_transfer by vwchan to the group beta on 2006-11-03 00:51:04 as * along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • Repetitive elements in genomes of parasitic protozoa.
    Microbiol Mol Biol Rev, Vol. 67, No. 3. (September 2003)
    by B Wickstead, K Ersfeld, K Gull
    posted to boundary review by vwchan to the group beta on 2006-11-03 00:43:15 as **
  • Gene transfer: gene swapping craze reaches eukaryotes.
    Curr Biol, Vol. 13, No. 2. (21 January 2003)
    by JP Gogarten
    posted to lateral_gene_transfer by vwchan to the group beta on 2006-11-02 23:53:46 as ** along with 1 person karfunkel
  • Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach.
    Genome Biol, Vol. 4, No. 6. (2003)
    by EH Scholl, JL Thorne, JP Mccarter, DM Bird
    posted to lateral_gene_transfer prediction by vwchan to the group beta on 2006-11-02 23:44:22 as **
  • Predicting RNA pseudoknot folding thermodynamics
    Nucleic Acids Research, Vol. 34, No. 9. (2006), pp. 2634-2652.
    by Song Cao, Shi-Jie Chen
    posted to energy-model pseudoknot rna by condon to the group beta on 2006-10-31 21:49:48 as ** along with 4 people Hosna apop physics Kiarostami
  • RNA Structure Prediction Including Pseudoknots Based on Stochastic Multiple Context-Free Grammar
    Workshop on Probabilistic Modeling and Machine Learning in Structural and Systems Biology (2006)
    by Yuki Kato, Hiroyuki Seki, Tadao Kasami
    posted to rna tags by condon to the group beta on 2006-10-27 17:46:08 as **
  • Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures
    Computational Systems Bioinformatics Conference, 2004. CSB 2004. Proceedings. 2004 IEEE (2004), pp. 290-299.
    by H Matsui, K Sato, Y Sakakibara
    posted to rna tags by condon to the group beta on 2006-10-27 17:31:00 as **
  • Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing.
    Antisense Nucleic Acid Drug Dev, Vol. 13, No. 2. (April 2003), pp. 83-105.
    by J Harborth, SM Elbashir, K Vandenburgh, H Manninga, SA Scaringe, K Weber, T Tuschl
    posted to review rna structure by condon to the group beta on 2006-10-27 17:19:36 as **
  • The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
    Biopolymers, Vol. 29, No. 6-7. (n 1990), pp. 1105-1119.
    by JS McCaskill
    posted to rna by condon to the group beta on 2006-10-17 21:26:04 as ** along with 5 people and 2 groups evaf marcius arcticrasta Hosna Kiarostami BioinfoCIPF SGU-CIPF
  • Versatile and declarative dynamic programming using pair algebras.
    BMC Bioinformatics, Vol. 6, No. 1. (12 September 2005)
    by Peter Steffen, Robert Giegerich
    posted to dynamic-programming by condon to the group beta on 2006-10-10 03:45:18 as ** along with 3 people BragilMassoud Hosna Kiarostami
  • INFO-RNA--a fast approach to inverse RNA folding.
    Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1823-1831.
    by A Busch, R Backofen
    posted to design by condon to the group beta on 2006-10-10 03:11:23 as **
  • The importance of thermodynamic equilibrium for high throughput gene expression arrays.
    Biophys J, Vol. 84, No. 1. (January 2003), pp. 124-135.
    by G Bhanot, Y Louzoun, J Zhu, C Delisi
    posted to dna by condon to the group beta on 2006-10-09 05:17:32 as ** along with 1 person stsaft
    • Note: You may cite this page as: http://www.citeulike.org/group/1268/library

    Result page: 1 2 3 4 5 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.