Group: BioinfoCIPF - with tag genome [30 articles] Export Sort

Recent papers posted by members of the BioinfoCIPF group with tag genome

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	RNA maps reveal new RNA classes and a possible function for pervasive transcription. [My Copy] Science (New York, N.Y.), Vol. 316, No. 5830. (8 June 2007), pp. 1484-1488. by Philipp Kapranov, Jill Cheng, Sujit Dike, et al.David A. Nix, Radharani Duttagupta, Aarron T. Willingham, Peter F. Stadler, Jana Hertel, Jörg Hackermüller, Ivo L. Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R. Gingeras posted to ncrna genome classification by marcius to the group BioinfoCIPF on 2007-06-15 11:16:53 as along with 15 people and 3 groups rsaito gdb maximilianh GustavoLacerda alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar xingxu EisenLab WetBiology SGU-CIPF
	The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. [My Copy] Science (New York, N.Y.), Vol. 313, No. 5795. (29 September 2006), pp. 1929-1935. by Justin Lamb, Emily D. Crawford, David Peck, et al.Joshua W. Modell, Irene C. Blat, Matthew J. Wrobel, Jim Lerner, Jean-Philippe P. Brunet, Aravind Subramanian, Kenneth N. Ross, Michael Reich, Haley Hieronymus, Guo Wei, Scott A. Armstrong, Stephen J. Haggarty, Paul A. Clemons, Ru Wei, Steven A. Carr, Eric S. Lander, Todd R. Golub posted to bioinformatics disease drug genome by marcius to the group BioinfoCIPF on 2006-10-04 13:02:14 as along with 30 people and 8 groups ilyashl gbloeb zufar ipark-kaist bertelsen mingzhi AbnerCYH Dulcinea dansullivanblk BragilMassoud guhjy kuhn jfr yas balajis lhonigberg neveaire kengg ealloza koller mlovell jdiggans ezra jeremymiller frohike massivemayhem lp2 pablomendes jdiezperezj askrajiv Biostatistics Computational-Genomics Bioinformatics Neuroscience T_lab SGU-CIPF GeschwindLab Plantandetc
	Principles of microRNA regulation of a human cellular signaling network. [My Copy] Molecular systems biology, Vol. 2 (2006) by Qinghua Cui, Zhenbao Yu, Enrico O. Purisima, Edwin Wang posted to function genome human microrna by marcius to the group BioinfoCIPF on 2006-10-04 12:53:03 as along with 9 people and 3 groups epinatel daforerog okarsligil jfr tardigrade mtagaya ealloza maralena bootsy cube_and_beyond Bioinformatics SGU-CIPF
	Genomics: Blueprints for partnerships [My Copy] Nature (17 September 2006) by David A. Stahl, Seana K. Davidson posted to genome metagenomics views by marcius to the group BioinfoCIPF on 2006-09-18 09:02:21 as along with 1 group SGU-CIPF
	The gain and loss of genes during 600 million years of vertebrate evolution [My Copy] Genome Biology, Vol. 7 (24 May 2006), R43. by Tine Blomme, Klaas Vandepoele, Stefanie De Bodt, Cedric Simillion, Steven Maere, Yves Van de Peer posted to evolution genome human by marcius to the group BioinfoCIPF on 2006-08-23 13:16:00 as along with 7 people and 3 groups dayjm operon balicea dchughes jhc jryanstevens FMoncini G4ID SGU-CIPF Genetics-of-Gambling
	Next station in microarray data analysis: GEPAS. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by D. Montaner, J. Tárraga, J. Huerta-Cepas, et al.J. Burguet, J. M. Vaquerizas, L. Conde, P. Minguez, J. Vera, S. Mukherjee, J. Valls, M. A. Pujana, E. Alloza, J. Herrero, F. Al-Shahrour, J. Dopazo posted to bioinformatics genome microarray servers by marcius to the group BioinfoCIPF on 2006-08-23 13:15:19 as along with 5 people and 1 group tardigrade rdiaz ealloza schuylrp sgoetz SGU-CIPF
	BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006), pp. W472-476. by Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, et al.David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo posted to bioinformatics function genome servers by marcius to the group BioinfoCIPF on 2006-08-23 13:14:46 as along with 6 people and 1 group frohike daforerog bertelsen rschulz ealloza Garamonfok SGU-CIPF
	RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse [My Copy] Nature, Vol. 441, No. 7092., pp. 469-474. by Minoo Rassoulzadegan, Valã©rie Grandjean, Pierre Gounon, Stã©phane Vincent, Isabelle Gillot, Franã§ois Cuzin posted to function genome rna by marcius to the group BioinfoCIPF on 2006-05-24 21:30:32 as along with 8 people and 8 groups chenlc03 dchughes mtagaya cmm neveaire klal epigenetics bpcusack Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID SGU-CIPF Genetics-of-Gambling
	A distal enhancer and an ultraconserved exon are derived from a novel retroposon [My Copy] Nature (16 April 2006) by Gill Bejerano, Craig B. Lowe, Nadav Ahituv, et al.Bryan King, Adam Siepel, Sofie R. Salama, Edward M. Rubin, James W. Kent, David Haussler posted to bioinformatics evolution gene_expression genome by marcius to the group BioinfoCIPF on 2006-05-09 00:21:57 as along with 5 people and 5 groups dchughes nickluscombe djkt cisevol gjuggler G4ID EBI-regulation SGU-CIPF Genetics-of-Gambling cis-regulatory-evolution
	Identification and Classification of Conserved RNA Secondary Structures in the Human Genome [My Copy] PLoS Comput Biol, Vol. 2, No. 4. (21 April 2006), e33. by Jakob S. Pedersen, Gill Bejerano, Adam Siepel, et al.Kate Rosenbloom, Kerstin Lindblad-Toh, Eric S. Lander, Jim Kent, Webb Miller, David Haussler posted to bioinformatics genome rna secondary_structure by marcius to the group BioinfoCIPF on 2006-04-24 19:45:10 as along with 14 people and 1 group rb_india guhjy NicholasErho eckart_bindewald tardigrade arcticrasta tabu mtagaya Eonwe ilh djkt raylim tale hpaces SGU-CIPF
	The functional genomics of noncoding RNA. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5740. (2 September 2005), pp. 1527-1528. by John S. Mattick posted to function genome ncrna review by marcius to the group BioinfoCIPF on 2006-04-11 20:04:42 as along with 12 people and 7 groups GeeSharpMinor coela biozhang2001 lyongu alexg eckart_bindewald dchughes mtagaya cmm neveaire bsmagic jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab bioinplant SGU-CIPF
	Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space. [My Copy] Nucleic acids research, Vol. 34, No. 3. (2006), pp. 1066-1080. by Russell L. Marsden, David Lee, Michael Maibaum, Corin Yeats, Christine A. Orengo posted to bioinformatics evolution genome protein_domains structural_genomics by marcius to the group BioinfoCIPF on 2006-03-15 23:00:52 as along with 3 people and 1 group maria_hauser operon eweaver SGU-CIPF
	A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans. [My Copy] Curr Biol (1 February 2006) by Sabbi Lall, Dominic Grün, Azra Krek, et al.Kevin Chen, Yi-Lu L. Wang, Colin N N. Dewey, Pranidhi Sood, Teresa Colombo, Nicolas Bray, Philip Macmenamin, Huey-Ling L. Kao, Kristin C C. Gunsalus, Lior Pachter, Fabio Piano, Nikolaus Rajewsky posted to genome ncrna by marcius to the group BioinfoCIPF on 2006-03-09 22:57:06 as along with 5 people and 3 groups thegoose2 tharris heliopais andersbj mtagaya C. elegans / WormBase microRNA SGU-CIPF
	A computational approach to identify genes for functional RNAs in genomic sequences [My Copy] Nucl. Acids Res., Vol. 29, No. 19. (1 October 2001), pp. 3928-3938. by Richard J. Carter, Inna Dubchak, Stephen R. Holbrook posted to bioinformatics genome ncrna by marcius to the group BioinfoCIPF on 2006-03-09 22:56:37 as along with 4 people and 1 group NicholasErho arcticrasta mtagaya kallberg SGU-CIPF
	Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes. [My Copy] Genome Res (6 March 2006) by Dmitry B B. Malko, Vsevolod J J. Makeev, Andrey A A. Mironov, Mikhail S S. Gelfand posted to evolution genome by marcius to the group BioinfoCIPF on 2006-03-09 22:56:10 as along with 4 people and 3 groups eoghanharr indigoviolet penka stajich EisenLab Nie SGU-CIPF
	Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs. [My Copy] Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 6057-6069. by U. Laserson, H. H. Gan, T. Schlick posted to computational_biology function genome ncrna rna by marcius to the group BioinfoCIPF on 2006-03-06 22:49:02 as along with 1 group SGU-CIPF
	Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression. [My Copy] Genome Res, Vol. 16, No. 1. (January 2006), pp. 20-29. by W. Deng, X. Zhu, G. Skogerbø, et al.Y. Zhao, Z. Fu, Y. Wang, H. He, L. Cai, H. Sun, C. Liu, B. Li, B. Bai, J. Wang, D. Jia, S. Sun, H. He, Y. Cui, Y. Wang, D. Bu, R. Chen posted to genome ncrna by marcius to the group BioinfoCIPF on 2006-03-02 03:21:08 as along with 4 people and 4 groups thegoose2 tharris imouthesmp bsmagic C. elegans / WormBase Bioinformatics bioinplant SGU-CIPF
	The colorectal microRNAome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 10. (7 March 2006), pp. 3687-3692. by J. M. Cummins, Y. He, R. J. Leary, et al.R. Pagliarini, L. A. Diaz, T. Sjoblom, O. Barad, Z. Bentwich, A. E. Szafranska, E. Labourier, C. K. Raymond, B. S. Roberts, H. Juhl, K. W. Kinzler, B. Vogelstein, V. E. Velculescu posted to experimental genome microrna by marcius to the group BioinfoCIPF on 2006-03-02 01:05:50 as along with 7 people and 2 groups danaiancu guhjy jfr eckart_bindewald andersbj mtagaya cpnP microRNA SGU-CIPF
	Elucidation of the Small RNA Component of the Transcriptome [My Copy] Science, Vol. 309, No. 5740. (2 September 2005), pp. 1567-1569. by Cheng Lu, Shivakundan S. Tej, Shujun Luo, Christian D. Haudenschild, Blake C. Meyers, Pamela J. Green posted to genome ncrna rna by marcius to the group BioinfoCIPF on 2006-02-27 23:54:14 as along with 4 people and 3 groups imouthesmp mortenlindow cdawson plofje microRNA SGU-CIPF GIG
	THE DRUGGABLE GENOME [My Copy] Nat Rev Drug Discov, Vol. 1, No. 9. (2002), pp. 727-730. by Andrew L. Hopkins, Colin R. Groom posted to drug genome review by marcius to the group BioinfoCIPF on 2006-02-16 17:31:21 as along with 6 people and 1 group ucbcjbm Yanno andreasauerwein Nambi happy_manatee ramensky SGU-CIPF
	The druggable genome: an update. [My Copy] Drug Discov Today, Vol. 10, No. 23-24. (December 2005), pp. 1607-1610. by A. P. Russ, S. Lampel posted to drug genome review by marcius to the group BioinfoCIPF on 2006-02-16 17:30:18 as along with 5 people and 2 groups ucbcjbm Yanno kuhn eweaver caporaso biomedical-nlp SGU-CIPF
	Computational identification of noncoding RNAs in E. coli by comparative genomics. [My Copy] Curr Biol, Vol. 11, No. 17. (4 September 2001), pp. 1369-1373. by E. Rivas, R. J. Klein, T. A. Jones, S. R. Eddy posted to computational_biology genes genome rna by marcius to the group BioinfoCIPF on 2006-02-10 20:26:44 as along with 7 people and 3 groups NicholasErho myrtilus evaf eckart_bindewald arcticrasta dquest bsmagic Bioinformatics bioinplant SGU-CIPF
	PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 248-250. by Anais Baudot, David Martin, Alain Guenoche, Bernard Jacq, Christine Brun posted to bioinformatics genome protein_function protein_interactions by marcius to the group BioinfoCIPF on 2006-02-02 05:50:04 as along with 2 people and 1 group eweaver maralena SGU-CIPF
	Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage [My Copy] Science, Vol. 309, No. 5736. (5 August 2005), pp. 938-940. by Jan Ihmels, Sven Bergmann, Maryam Gerami-Nejad, et al.Itai Yanai, Mark McClellan, Judith Berman, Naama Barkai posted to evolution gene_expression genes genome by marcius to the group BioinfoCIPF on 2006-02-02 00:41:46 as along with 11 people and 2 groups hge balabu roys Ema aalibes monod arve adepace entropy janek04 emptyhb EisenLab SGU-CIPF
	Computational verification of protein-protein interactions by orthologous co-expression. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by I. Tirosh, N. Barkai posted to evolution gene_expression genes genome by marcius to the group BioinfoCIPF on 2006-02-02 00:41:31 as along with 4 people and 1 group brianb nedwards conkymacro bluto SGU-CIPF
	Defining transcription modules using large-scale gene expression data. [My Copy] Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 1993-2003. by J. Ihmels, S. Bergmann, N. Barkai posted to evolution gene_expression genes genome by marcius to the group BioinfoCIPF on 2006-02-02 00:41:19 as along with 5 people and 2 groups aviad_work adepace natstreet tvdbulck siebert EisenLab SGU-CIPF
	Similarities and Differences in Genome-Wide Expression Data of Six Organisms [My Copy] PLoS Biol, Vol. 2, No. 1. (15 December 2003), e9. by Sven Bergmann, Jan Ihmels, Naama Barkai posted to evolution gene_expression genes genome by marcius to the group BioinfoCIPF on 2006-02-02 00:41:05 as along with 10 people and 2 groups bertelsen thegoose2 floatingpoint roys tharris dragonrez Ayest RMGraze koller jeremymiller C. elegans / WormBase SGU-CIPF
	Genome-scale evidence of the nematode-arthropod clade. [My Copy] Genome Biol, Vol. 6, No. 5. (2005) by H. Dopazo, J. Dopazo posted to bioinformatics evolution genome by marcius to the group BioinfoCIPF on 2006-01-17 19:11:25 as along with 5 people and 2 groups thegoose2 fridab tharris hdopazo Garamonfok C. elegans / WormBase SGU-CIPF
	BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by F. Al-Shahrour, P. Minguez, J. M. Vaquerizas, L. Conde, J. Dopazo posted to bioinformatics genes genome servers by marcius to the group BioinfoCIPF on 2006-01-17 19:11:05 as along with 4 people and 1 group RMGraze eweaver Garamonfok sgoetz SGU-CIPF
	The genome sequence of the malaria mosquito Anopheles gambiae. [My Copy] Science, Vol. 298, No. 5591. (4 October 2002), pp. 129-149. by R. A. Holt, G. M. Subramanian, A. Halpern, et al.G. G. Sutton, R. Charlab, D. R. Nusskern, P. Wincker, A. G. Clark, J. M. Ribeiro, R. Wides, S. L. Salzberg, B. Loftus, M. Yandell, W. H. Majoros, D. B. Rusch, Z. Lai, C. L. Kraft, J. F. Abril, V. Anthouard, P. Arensburger, P. W. Atkinson, H. Baden, V. de Berardinis, D. Baldwin, V. Benes, J. Biedler, C. Blass, R. Bolanos, D. Boscus, M. Barnstead, S. Cai, A. Center, K. Chaturverdi, G. K. Christophides, M. A. Chrystal, M. Clamp, A. Cravchik, V. Curwen, A. Dana, A. Delcher, I. Dew, C. A. Evans, M. Flanigan, A. Grundschober-Freimoser, L. Friedli, Z. Gu, P. Guan, R. Guigo, M. E. Hillenmeyer, S. L. Hladun, J. R. Hogan, Y. S. Hong, J. Hoover, O. Jaillon, Z. Ke, C. Kodira, E. Kokoza, A. Koutsos, I. Letunic, A. Levitsky, Y. Liang, J. J. Lin, N. F. Lobo, J. R. Lopez, J. A. Malek, T. C. McIntosh, S. Meister, J. Miller, C. Mobarry, E. Mongin, S. D. Murphy, D. A. O'Brochta, C. Pfannkoch, R. Qi, M. A. Regier, K. Remington, H. Shao, M. V. Sharakhova, C. D. Sitter, J. Shetty, T. J. Smith, R. Strong, J. Sun, D. Thomasova, L. Q. Ton, P. Topalis, Z. Tu, M. F. Unger, B. Walenz, A. Wang, J. Wang, M. Wang, X. Wang, K. J. Woodford, J. R. Wortman, M. Wu, A. Yao, E. M. Zdobnov, H. Zhang, Q. Zhao, S. Zhao, S. C. Zhu, I. Zhimulev, M. Coluzzi, A. della Torre, C. W. Roth, C. Louis, F. Kalush, R. J. Mural, E. W. Myers, M. D. Adams, H. O. Smith, S. Broder, M. J. Gardner, C. M. Fraser, E. Birney, P. Bork, P. T. Brey, J. C. Venter, J. Weissenbach, F. C. Kafatos, F. H. Collins, S. L. Hoffman posted to dna genome sequence by marcius to the group BioinfoCIPF on 2005-10-23 09:50:49 as along with 11 people and 3 groups APRegier dakelley taroleo pdolan sdinka jwortman jmeppley meister1975 stajich niallhaslam Neeperando SGU-CIPF Mycology Notre Dame Bioinformatics

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Group: BioinfoCIPF - with tag genome [30 articles] Export Sort

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