Group: BioinfoCIPF - with tag model_assessment [19 articles] Export Sort

Recent papers posted by members of the BioinfoCIPF group with tag model_assessment

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	Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space. [My Copy] Proteins, Vol. 50, No. 1. (1 January 2003), pp. 35-43. by S. Miyazawa, R. L. Jernigan posted to computational_biology model_assessment statistical_potentials by marcius to the group BioinfoCIPF on 2006-03-07 18:44:30 as along with 1 person and 3 groups ana structural_bioinformatics Bioinformatics SGU-CIPF
	Knowledge-based potential functions in protein design. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 4. (August 2002), pp. 447-452. by W. P. Russ, R. Ranganathan posted to biophysics model_assessment protein_structure review by marcius to the group BioinfoCIPF on 2006-01-20 23:02:36 as along with 1 person and 1 group gbart SGU-CIPF
	Database-derived potentials dependent on protein size for in silico folding and design. [My Copy] Biophys J, Vol. 87, No. 1. (July 2004), pp. 171-181. by Y. Dehouck, D. Gilis, M. Rooman posted to computational_biology model_assessment by marcius to the group BioinfoCIPF on 2006-01-20 22:59:04 as along with 1 group SGU-CIPF
	An information theoretic approach to macromolecular modeling: I. Sequence alignments. [My Copy] Biophys J, Vol. 89, No. 5. (November 2005), pp. 2998-3007. by T. Aynechi, I. D. Kuntz posted to bioinformatics biophysics model_assessment sequence_alignment by marcius to the group BioinfoCIPF on 2006-01-20 22:56:59 as along with 1 person and 1 group nickolay SGU-CIPF
	An Information Theoretic Approach to Macromolecular Modeling: II. Force Fields. [My Copy] Biophys J, Vol. 89, No. 5. (November 2005), pp. 3008-3016. by T. Aynechi, I. D. Kuntz posted to bioinformatics biophysics computational_biology model_assessment molecular_dynamics by marcius to the group BioinfoCIPF on 2006-01-20 22:54:26 as along with 1 person and 1 group nickolay SGU-CIPF
	Prediction of protein thermostability with a direction- and distance-dependent knowledge-based potential. [My Copy] Protein Sci, Vol. 14, No. 10. (October 2005), pp. 2682-2692. by C. Hoppe, D. Schomburg posted to model_assessment protein_structure protein_threading by marcius to the group BioinfoCIPF on 2006-01-19 19:51:53 as along with 1 group SGU-CIPF
	Improving sequence-based fold recognition by using 3D model quality assessment. [My Copy] Bioinformatics, Vol. 21, No. 17. (1 September 2005), pp. 3509-3515. by C. S. Pettitt, L. J. McGuffin, D. T. Jones posted to biophysics model_assessment protein_threading by marcius to the group BioinfoCIPF on 2006-01-13 23:57:18 as along with 1 group SGU-CIPF
	Automatic assessment of alignment quality [My Copy] Nucleic Acids Research, Vol. 33, No. 22. (2005), pp. 7120-7128. by Timo Lassmann, Erik L. Sonnhammer posted to bioinformatics model_assessment sequence_alignment by marcius to the group BioinfoCIPF on 2006-01-12 19:11:40 as along with 2 people and 1 group BioNica treangen SGU-CIPF
	Practical lessons from protein structure prediction. [My Copy] Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891. by K. Ginalski, N. V. Grishin, A. Godzik, L. Rychlewski posted to cafasp casp comparative_modeling model_assessment structure_prediction by marcius to the group BioinfoCIPF on 2005-12-22 06:53:06 as along with 8 people and 3 groups mcbla ana aalibes thaliana okarsligil duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics SGU-CIPF
	Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models. [My Copy] Proteins (26 September 2005) by Andrzej Koliński, Janusz M M. Bujnicki posted to ab-initio bioinformatics comparative_modeling model_assessment structure_prediction by marcius to the group BioinfoCIPF on 2005-10-22 09:12:12 as along with 5 people and 1 group rabio mijam mcbla nigham dgront SGU-CIPF
	Protein structure prediction using a variety of profile libraries and 3D verification. [My Copy] Proteins (26 September 2005) by Kentaro Tomii, Takatsugu Hirokawa, Chie Motono posted to bioinformatics cafasp casp model_assessment structure_prediction by marcius to the group BioinfoCIPF on 2005-10-22 09:11:09 as along with 1 group SGU-CIPF
	TASSER: An automated method for the prediction of protein tertiary structures in CASP6. [My Copy] Proteins (26 September 2005) by Yang Zhang, Adrian K K. Arakaki, Jeffrey Skolnick posted to cafasp casp model_assessment structure_alignment by marcius to the group BioinfoCIPF on 2005-10-22 08:58:50 as along with 4 people and 1 group nigham dgront schuylrp mirzazadeh SGU-CIPF
	Prediction of novel and analogous folds using fragment assembly and fold recognition. [My Copy] Proteins (26 September 2005) by D T T. Jones, K Bryson, A Coleman, et al.L J J. McGuffin, M I I. Sadowski, J S S. Sodhi, J J J. Ward posted to cafasp casp comparative_modeling model_assessment protein_fragments protein_structure structure_prediction by marcius to the group BioinfoCIPF on 2005-10-22 08:57:29 as along with 1 group SGU-CIPF
	SPARKS 2 and SP(3) servers in CASP 6. [My Copy] Proteins (26 September 2005) by Hongyi Zhou, Yaoqi Zhou posted to cafasp casp comparative_modeling model_assessment protein_structure structure_prediction by marcius to the group BioinfoCIPF on 2005-10-22 08:56:27 as along with 1 person and 1 group j3xucite SGU-CIPF
	Scoring function for automated assessment of protein structure template quality [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 4. (2004), pp. 702-710. by Yang Zhang, Jeffrey Skolnick posted to computational_biology model_assessment protein_structure by marcius to the group BioinfoCIPF on 2005-10-21 21:55:27 as along with 9 people and 1 group dfdong pjcite saunders reyez karbak dgront aengisch rabio granujilla SGU-CIPF
	Can correct protein models be identified? [My Copy] Protein Sci, Vol. 12, No. 5. (May 2003), pp. 1073-1086. by B. Wallner, A. Elofsson posted to cafasp casp model_assessment by marcius to the group BioinfoCIPF on 2005-10-21 21:10:50 as along with 2 people and 1 group pjcite j3xucite SGU-CIPF
	Discrimination of native loop conformations in membrane proteins: decoy library design and evaluation of effective energy scoring functions. [My Copy] Proteins, Vol. 52, No. 4. (1 September 2003), pp. 492-509. by L. R. Forrest, T. B. Woolf posted to computational_biology model_assessment protein_structure software by marcius to the group BioinfoCIPF on 2005-10-21 21:08:44 as along with 1 person and 1 group thaliana SGU-CIPF
	Effective energy function for proteins in solution. [My Copy] Proteins, Vol. 35, No. 2. (1 May 1999), pp. 133-152. by T. Lazaridis, M. Karplus posted to computational_biology model_assessment protein_folding software by marcius to the group BioinfoCIPF on 2005-10-21 21:08:08 as along with 6 people and 1 group melo_mcr oceanwind bluvsh1 choonpeng hmk kgutwin SGU-CIPF
	Derivation of protein-specific pair potentials based on weak sequence fragment similarity. [My Copy] Proteins, Vol. 38, No. 1. (1 January 2000), pp. 3-16. by J. Skolnick, A. Kolinski, A. Ortiz posted to biophysics model_assessment statistical_potentials by marcius to the group BioinfoCIPF on 2005-10-21 20:27:37 as along with 2 people and 1 group dgront mcbla SGU-CIPF

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