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Group: BioinfoCIPF - with tag positive [23 articles]

Recent papers posted by members of the BioinfoCIPF group with tag positive
  • Recent acceleration of human adaptive evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20753-20758.
    by John Hawks, Eric T Wang, Gregory M Cochran, Henry C Harpending, Robert K Moyzis
    posted to evolution human positive selection by hdopazo to the group BioinfoCIPF on 2008-02-04 17:33:37 as ** along with 9 people and 2 groups hpaces shoshin candypmcg balicea laharrin cannon qwermish wsjames coyotetraxx Oxford Virology Fasting, food and evolution
  • Statistical methods for detecting molecular adaptation.
    TRENDS IN ECOLOGY AND EVOLUTION, Vol. 15, No. 12. (1 December 2000), pp. 496-503.
    by Z Yang, JP Bielawski
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 10:51:39 as ** along with 2 people and 2 groups clearbluespring stevanspringer Bioinformatics FAB-lab
  • Rates of nucleotide substitution and mammalian nuclear gene evolution. Approximate and maximum-likelihood methods lead to different conclusions.
    Genetics, Vol. 156, No. 3. (November 2000), pp. 1299-1308.
    by JP Bielawski, KA Dunn, Z Yang
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 10:51:12 as **
  • Evolution of the Zfx and Zfy genes: rates and interdependence between the genes.
    Mol Biol Evol, Vol. 10, No. 2. (March 1993), pp. 271-281.
    by P Pamilo, NO Bianchi
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 10:43:59 as **
  • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models.
    Mol Biol Evol, Vol. 17, No. 1. (January 2000), pp. 32-43.
    by Z Yang, R Nielsen
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 10:42:53 as ** along with 8 people bjorns fernan BioNica timflutre Garamonfok ankur_iitg RamuAnandakrishnan Ema
  • New methods for estimating the numbers of synonymous and nonsynonymous substitutions.
    J Mol Evol, Vol. 40, No. 2. (February 1995), pp. 190-226.
    by Y Ina
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 10:39:12 as **
  • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.
    Mol Biol Evol, Vol. 2, No. 2. (March 1985), pp. 150-174.
    by WH Li, CI Wu, CC Luo
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 10:38:44 as ** along with 1 person bjorns
  • Unbiased estimation of the rates of synonymous and nonsynonymous substitution.
    J Mol Evol, Vol. 36, No. 1. (January 1993), pp. 96-99.
    by WH Li
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 10:35:07 as **
  • A codon-based model of nucleotide substitution for protein-coding DNA sequences.
    Mol Biol Evol, Vol. 11, No. 5. (September 1994), pp. 725-736.
    by N Goldman, Z Yang
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 10:00:07 as ** along with 5 people BioNica usagi-kirin mingzhi gjuggler AtoZ
  • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
    Mol Biol Evol, Vol. 3, No. 5. (September 1986), pp. 418-426.
    by M Nei, T Gojobori
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 09:55:19 as ** along with 5 people CharlesM jmeppley usagi-kirin ankur_iitg friendpine
  • Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application.
    J Mol Evol, Vol. 16, No. 1. (September 1980), pp. 23-36.
    by T Miyata, T Yasunaga
    posted to adaptation positive selection w by hdopazo to the group BioinfoCIPF on 2006-09-08 09:44:59 as **
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to genomics positive selection snp by hdopazo to the group BioinfoCIPF on 2006-08-11 15:21:28 as ** along with 20 people and 6 groups pradiptaray shoshin stevanspringer kentsis bpb balajis indigoviolet ejeffery madhadron breden tiago larios ashandanj livingthingdan djkt mbeautru grahamc suizan iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch livingthing Durbin group
  • Robust inference of positive selection from recombining coding sequences.
    Bioinformatics (7 August 2006)
    by Konrad Scheffler, Darren P P Martin, Cathal Seoighe
    posted to positive recombination selection by hdopazo to the group BioinfoCIPF on 2006-08-11 15:02:39 as ** along with 2 people shehroz Natasha
  • Genomic signatures of positive selection in humans and the limits of outlier approaches
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 980-989.
    by Joanna L Kelley, Jennifer Madeoy, John C Calhoun, Willie Swanson, Joshua M Akey
    posted to genomics popgen positive selection snp by hdopazo to the group BioinfoCIPF on 2006-08-11 14:45:38 as ** along with 1 person djkt
  • A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.
    Bioinformatics (15 July 2006)
    by Chun Zhang, Dione K K Bailey, Tarif Awad, Guoying Liu, Guoliang Xing, Manqiu Cao, Venu Valmeekam, Jacques Retief, Hajime Matsuzaki, Margaret Taub, Mark Seielstad, Giulia C C Kennedy
    posted to genomics human popgen positive selection snp by hdopazo to the group BioinfoCIPF on 2006-08-11 14:33:28 as ** along with 1 person iris42
  • Positive selection in MAOA gene is human exclusive: determination of the putative amino acid change selected in the human lineage.
    Hum Genet, Vol. 115, No. 5. (October 2004), pp. 377-386.
    by AM Andrés, M Soldevila, A Navarro, KK Kidd, B Oliva, J Bertranpetit
    posted to human popgen positive selection by hdopazo to the group BioinfoCIPF on 2006-08-10 11:45:24 as ** along with 1 person rhancock
  • A scan for positively selected genes in the genomes of humans and chimpanzees.
    PLoS Biol, Vol. 3, No. 6. (June 2005)
    by R Nielsen, C Bustamante, AG Clark, S Glanowski, TB Sackton, MJ Hubisz, A Fledel-Alon, DM Tanenbaum, D Civello, TJ White, J J Sninsky, MD Adams, M Cargill
    posted to compgenomics human positive selection by hdopazo to the group BioinfoCIPF on 2006-08-10 11:44:05 as ** along with 6 people and 2 groups stevanspringer jwortman bpb penka djkt iris42 Nie FAB-lab
  • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
    Science, Vol. 302, No. 5652. (12 December 2003), pp. 1960-1963.
    by AG Clark, S Glanowski, R Nielsen, PD Thomas, A Kejariwal, MA Todd, DM Tanenbaum, D Civello, F Lu, B Murphy, S Ferriera, G Wang, X Zheng, TJ White, JJ Sninsky, MD Adams, M Cargill
    posted to compgenomics human positive selection by hdopazo to the group BioinfoCIPF on 2006-08-10 11:43:15 as ** along with 4 people gjuggler Ema ejeffery djkt
  • Whole-Genome Patterns of Common DNA Variation in Three Human Populations
    Science, Vol. 307, No. 5712. (18 February 2005), pp. 1072-1079.
    by David A Hinds, Laura L Stuve, Geoffrey B Nilsen, Eran Halperin, Eleazar Eskin, Dennis G Ballinger, Kelly A Frazer, David R Cox
    posted to human positive selection snp by hdopazo to the group BioinfoCIPF on 2006-08-10 11:41:13 as ** along with 6 people jshapiro mercaptan akeyj saxonov Archaeogenetics djkt
  • Detecting recent positive selection in the human genome from haplotype structure
    Nature, Vol. 419, No. 6909. (24 October 2002), pp. 832-837.
    by Pardis C Sabeti, David E Reich, John M Higgins, Haninah Z Levine, Daniel J Richter, Stephen F Schaffner, Stacey B Gabriel, Jill V Platko, Nick J Patterson, Gavin J Mcdonald, Hans C Ackerman, Sarah J Campbell, David Altshuler, Richard Cooper, Dominic Kwiatkowski, Ryk Ward, Eric S Lander
    posted to human popgen positive selection by hdopazo to the group BioinfoCIPF on 2006-08-10 11:37:22 as ** along with 5 people balicea jasonflannick brant ausiddiqui djkt
  • Positive Natural Selection in the Human Lineage
    Science, Vol. 312, No. 5780. (16 June 2006), pp. 1614-1620.
    by PC Sabeti, SF Schaffner, B Fry, J Lohmueller, P Varilly, O Shamovsky, A Palma, TS Mikkelsen, D Altshuler, ES Lander
    posted to human popgen positive selection by hdopazo to the group BioinfoCIPF on 2006-08-10 11:32:12 as ** along with 7 people and 3 groups jasonflannick dchughes cmm larios djkt ramensky iris42 FAB-lab G4ID Genetics-of-Gambling
  • Synonymous and nonsynonymous rate variation in nuclear genes of mammals
    J Mol Evol., Vol. 46 (1998), pp. 409-418.
    by Nielsen
    posted to adaptation positive selection by hdopazo to the group BioinfoCIPF on 2006-07-21 17:37:58 as read
  • Adaptive Molecular Evolution
    (2003)
    by Z Yang
    edited by D Balding, M Bishop, Cannings
    posted to adaptation positive selection by hdopazo to the group BioinfoCIPF on 2006-07-21 17:37:45 as read
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