Group: BioinfoCIPF - with tag protein [44 articles] Export

Recent papers posted by members of the BioinfoCIPF group with tag protein

	Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 1. (2007) by Marco Masseroli, Elisa Bellistri, Andrea Franceschini, Francesco Pinciroli posted to webserver protein gene_list_analysis algorithm by ealloza to the group BioinfoCIPF on 2007-06-25 12:48:21 as along with 1 person guhjy
	Sequence comparison by sequence harmony identifies subtype-specific functional sites. [My Copy] Nucleic acids research, Vol. 34, No. 22. (December 2006), pp. 6540-6548. by W. Pirovano, K. A. Feenstra, J. Heringa posted to bioinformatics classification function protein sequence_alignment by marcius to the group BioinfoCIPF on 2007-01-03 13:02:03 as along with 4 people and 1 group mgomes jameswasmuth sriram_s marti SGU-CIPF
	Variability and memory of protein levels in human cells [My Copy] Nature (19 November 2006) by Alex Sigal, Ron Milo, Ariel Cohen, et al.Naama Geva-Zatorsky, Yael Klein, Yuvalal Liron, Nitzan Rosenfeld, Tamar Danon, Natalie Perzov, Uri Alon posted to classification protein systems_biology by marcius to the group BioinfoCIPF on 2006-11-23 11:02:59 as along with 4 people and 2 groups icases jjray margaritis cjeans SGU-CIPF TNT
	Evaluation of library ranking efficacy in virtual screening. [My Copy] J Comput Chem, Vol. 26, No. 1. (15 January 2005), pp. 11-22. by M. Kontoyianni, G. S. Sokol, L. M. McClellan posted to algorithms docking drug ligand protein by marcius to the group BioinfoCIPF on 2006-10-21 14:25:23 as along with 3 people and 1 group BragilMassoud nachtalp schuwi SGU-CIPF
	Protemot: prediction of protein binding sites with automatically extracted geometrical templates. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by D. T. Chang, Y. Z. Weng, J. H. Lin, M. J. Hwang, Y. J. Oyang posted to bioinformatics drug ligand protein by marcius to the group BioinfoCIPF on 2006-10-21 14:24:50 as along with 1 group SGU-CIPF
	Structural bioinformatic approaches to the discovery of new antimycobacterial drugs. [My Copy] Curr Pharm Des, Vol. 10, No. 26. (2004), pp. 3195-3211. by K. Kantardjieff, B. Rupp posted to bioinformatics docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:23:24 as along with 1 group SGU-CIPF
	Virtual screening in structure-based drug discovery. [My Copy] Mini Rev Med Chem, Vol. 4, No. 7. (September 2004), pp. 779-791. by X. Barril, R. E. Hubbard, S. D. Morley posted to algorithms docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:22:35 as along with 1 group SGU-CIPF
	Virtual screening in lead discovery and optimization. [My Copy] Curr Opin Drug Discov Devel, Vol. 7, No. 4. (July 2004), pp. 396-403. by A. N. Jain posted to algorithms docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:21:52 as along with 1 group SGU-CIPF
	Docking and scoring in virtual screening for drug discovery: methods and applications. [My Copy] Nat Rev Drug Discov, Vol. 3, No. 11. (November 2004), pp. 935-949. by D. B. Kitchen, H. Decornez, J. R. Furr, J. Bajorath posted to algorithms docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:16:46 as along with 8 people and 8 groups LamBras robert85 BragilMassoud dgruiz beapen anita yongzhao sangeetha Bioinformatics structure-bii TSRI_MGL Atopic_and_Seborrhoeic_Dermatitis Skin_Deep insilicodrug Applied_Bimatics SGU-CIPF
	A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 235-249. by E. Perola, W. P. Walters, P. S. Charifson posted to docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:16:10 as along with 5 people and 2 groups oteri ramensky BragilMassoud yongzhao schlauchi TSRI_MGL SGU-CIPF
	Current status of virtual screening as analysed by target class. [My Copy] Med Chem, Vol. 2, No. 1. (January 2006), pp. 89-112. by M. J. Stoermer posted to algorithms docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:14:08 as along with 1 person and 2 groups yongzhao TSRI_MGL SGU-CIPF
	Recent development and application of virtual screening in drug discovery: an overview. [My Copy] Curr Pharm Des, Vol. 10, No. 9. (2004), pp. 1011-1033. by T. Hou, X. Xu posted to algorithms docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:12:44 as along with 1 group SGU-CIPF
	A review of protein-small molecule docking methods. [My Copy] J Comput Aided Mol Des, Vol. 16, No. 3. (March 2002), pp. 151-166. by R. D. Taylor, P. J. Jewsbury, J. W. Essex posted to algorithms docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:11:15 as along with 6 people and 4 groups klexa csrocha oteri sangeetha schlauchi massivemayhem Structural Biology Group TorVergata Bioinformatics insilicodrug SGU-CIPF
	Computational tools for protein modeling. [My Copy] Current protein & peptide science, Vol. 1, No. 1. (July 2000), pp. 1-21. by D. Xu, Y. Xu, E. C. Uberbacher posted to algorithms protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:10:31 as along with 3 people and 1 group wilbur flbarroso granujilla SGU-CIPF
	Modelling and simulation: a computational perspective in anticancer drug discovery. [My Copy] Curr Med Chem Anticancer Agents, Vol. 4, No. 5. (September 2004), pp. 401-403. by F. Gago posted to algorithms cancer docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:08:41 as along with 1 person and 3 groups sangeetha Bioinformatics insilicodrug SGU-CIPF
	Docking: successes and challenges. [My Copy] Curr Pharm Des, Vol. 11, No. 3. (2005), pp. 323-333. by V. Mohan, A. C. Gibbs, M. D. Cummings, E. P. Jaeger, R. L. DesJarlais posted to algorithms docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:08:05 as along with 1 person and 1 group kazemi SGU-CIPF
	New methodologies for ligand-based virtual screening. [My Copy] Curr Pharm Des, Vol. 11, No. 9. (2005), pp. 1189-1202. by F. L. Stahura, J. Bajorath posted to algorithms docking drug ligand protein review by marcius to the group BioinfoCIPF on 2006-10-21 14:03:11 as along with 1 person and 3 groups sangeetha Bioinformatics insilicodrug SGU-CIPF
	A comparative docking study and the design of potentially selective MMP inhibitors. [My Copy] J Comput Aided Mol Des, Vol. 15, No. 10. (October 2001), pp. 873-881. by S. Hanessian, N. Moitessier, E. Therrien posted to algorithms docking ligand protein by marcius to the group BioinfoCIPF on 2006-10-21 14:01:55 as along with 1 group SGU-CIPF
	A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 18. (1 September 1998), pp. 10413-10418. by S. Rhee, R. G. Martin, J. L. Rosner, D. R. Davies posted to protein structure by marcius to the group BioinfoCIPF on 2006-09-27 15:15:44 as along with 2 people and 1 group jstajic ezralanglois SGU-CIPF
	Natural history as a predictor of protein evolvability [My Copy] Protein Engineering, Design and Selection, Vol. 19, No. 10. (1 October 2006), pp. 439-442. by Taryn L. O'Loughlin, Wayne M. Patrick, Ichiro Matsumura posted to biology evolution protein structure by marcius to the group BioinfoCIPF on 2006-09-27 13:52:56 as along with 1 person and 1 group pablocarb SGU-CIPF
	Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures. [My Copy] Bioinformatics (11 September 2006) by N Morozova, J Allers, J Myers, Y Shamoo posted to interaction protein rna by marcius to the group BioinfoCIPF on 2006-09-15 08:51:28 as along with 7 people and 2 groups balewis svozil semin yoonk kaarsinogen eckart_bindewald medic0747 Bioinformatics SGU-CIPF
	Sequence and structural differences between enzyme and nonenzyme homologs. [My Copy] Structure (Camb), Vol. 10, No. 10. (October 2002), pp. 1435-1451. by A. E. Todd, C. A. Orengo, J. M. Thornton posted to bioinformatics classification function protein by marcius to the group BioinfoCIPF on 2006-09-13 15:36:46 as along with 1 person and 1 group matzke SGU-CIPF
	Mass spectrometry and the search for moonlighting proteins. [My Copy] Mass Spectrom Rev, Vol. 24, No. 6. (c 2005), pp. 772-782. by C. J. Jeffery posted to function protein structure by marcius to the group BioinfoCIPF on 2006-09-08 16:34:58 as along with 1 person and 1 group tny SGU-CIPF
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted to evolution protein review structure by marcius to the group BioinfoCIPF on 2006-09-08 12:28:15 as along with 20 people and 5 groups krapnik dfdong ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc sriram_s ezotenko redelings medic0747 nigham sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics SGU-CIPF
	Gene3D: modelling protein structure, function and evolution. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by C. Yeats, M. Maibaum, R. Marsden, et al.M. Dibley, D. Lee, S. Addou, C. A. Orengo posted to function protein server structure by marcius to the group BioinfoCIPF on 2006-09-08 12:27:34 as along with 1 person and 1 group siebertm SGU-CIPF
	Exploiting protein structure data to explore the evolution of protein function and biological complexity. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 425-440. by R. L. Marsden, J. A. Ranea, A. Sillero, et al.O. Redfern, C. Yeats, M. Maibaum, D. Lee, S. Addou, G. A. Reeves, T. J. Dallman, C. A. Orengo posted to evolution function protein structure by marcius to the group BioinfoCIPF on 2006-09-08 12:26:40 as along with 2 people and 1 group yuslinaz jsnoddy SGU-CIPF
	Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 2. (February 2002), pp. 350-360. by Iddo Friedberg, Hanah Margalit posted to fold function prediction protein by marcius to the group BioinfoCIPF on 2006-09-07 17:10:19 as along with 1 person and 1 group danatcaret SGU-CIPF
	New avenues in protein function prediction. [My Copy] Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1527-1529. by I. Friedberg, M. Jambon, A. Godzik posted to function prediction protein views by marcius to the group BioinfoCIPF on 2006-09-07 17:09:26 as along with 4 people and 3 groups ana aalibes tjimenez topsan structural_bioinformatics Bioinformatics SGU-CIPF
	Automated protein function prediction--the genomic challenge. [My Copy] Briefings in bioinformatics, Vol. 7, No. 3. (23 September 2006), pp. 225-242. by I. Friedberg posted to function prediction protein views by marcius to the group BioinfoCIPF on 2006-09-07 17:06:24 as along with 12 people and 2 groups michaelbarton kiekyon MarcoAlvarez Keywan idoerg shung tjimenez yas j3xucite cdallett sgoetz bootsy T_lab SGU-CIPF
	JAFA: a protein function annotation meta-server. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by I. Friedberg, T. Harder, A. Godzik posted to function protein servers by marcius to the group BioinfoCIPF on 2006-09-07 17:05:10 as along with 2 people and 1 group idoerg sgoetz SGU-CIPF
	A top-level ontology of functions and its application in the Open Biomedical Ontologies [My Copy] Bioinformatics, Vol. 22, No. 14. (July 2006), pp. e66-e73. by P. Burek, R. Hoehndorf, F. Loebe, J. Visagie, H. Herre, J. Kelso posted to classification function protein by marcius to the group BioinfoCIPF on 2006-08-01 11:49:45 as along with 1 person and 1 group ealloza SGU-CIPF
	The correlation between protein stability and dipole moment: a critical test [My Copy] Protein Engineering, Design and Selection, Vol. 19, No. 8. (August 2006), pp. 355-358. by Wunderlich, Michael, Schmid, X. Franz posted to biophysics experimental protein stability structure by marcius to the group BioinfoCIPF on 2006-07-26 14:35:56 as along with 1 group SGU-CIPF
	Fast protein classification with multiple networks. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by K. Tsuda, H. Shin, B. Schölkopf posted to bioinformatics classification protein by marcius to the group BioinfoCIPF on 2006-05-15 22:41:32 as along with 3 people and 1 group ajbattle dwf bootsy SGU-CIPF
	GlyProt: in silico glycosylation of proteins. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by A. Bohne-Lang, C. W. von der Lieth posted to bioinformatics glyco protein by marcius to the group BioinfoCIPF on 2006-05-07 20:54:07 as along with 2 people and 1 group bpb csardas SGU-CIPF
	Physical Origins of Protein Superfamilies. [My Copy] J Mol Biol (6 February 2006) by Konstantin B B. Zeldovich, Igor N N. Berezovsky, Eugene I I. Shakhnovich posted to biophysics computational_biology evolution protein structure by marcius to the group BioinfoCIPF on 2006-04-27 20:29:04 as along with 3 people and 2 groups Einat laurabailey happy_manatee structural_bioinformatics SGU-CIPF
	Development and validation of a consistency based multiple structure alignment algorithm [My Copy] Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1080-1087. by Jessica Ebert, Douglas Brutlag posted to bioinformatics protein structure_alignment by marcius to the group BioinfoCIPF on 2006-04-24 19:49:13 as along with 1 person and 1 group radek SGU-CIPF
	Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins [My Copy] Science, Vol. 312, No. 5770. (7 April 2006), pp. 111-114. by Daniel M. Weinreich, Nigel F. Delaney, Mark A. Depristo, Daniel L. Hartl posted to evolution protein by marcius to the group BioinfoCIPF on 2006-04-21 17:29:24 as along with 14 people and 4 groups stevanspringer barry pansapiens imouthesmp dayjm Einat i41m nirfriedman cmm RowanBarrett ramensky Vaquero Ema bpcusack structural_bioinformatics Bioinformatics FAB-lab SGU-CIPF
	The DIMA web resourceexploring the protein domain network [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 997-998. by Philipp Pagel, Matthias Oesterheld, Dmitrij Frishman posted to bioinformatics protein protein_interactions servers software by marcius to the group BioinfoCIPF on 2006-04-08 00:11:05 as along with 3 people and 1 group chad_davis bootsy kintoki SGU-CIPF
	RNA molecules stimulate prion protein conversion. [My Copy] Nature, Vol. 425, No. 6959. (16 October 2003), pp. 717-720. by N. R. Deleault, R. W. Lucassen, S. Supattapone posted to disease docking protein rna by marcius to the group BioinfoCIPF on 2006-03-14 03:01:13 as along with 1 person and 1 group mtagaya SGU-CIPF
	PMUT: a web-based tool for the annotation of pathological mutations on proteins. [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3176-3178. by C. Ferrer-Costa, J. L. Gelpí, L. Zamakola, I. Parraga, X. de la Cruz, M. Orozco posted to protein protein_structure servers snp by marcius to the group BioinfoCIPF on 2006-01-17 19:14:25 as along with 2 groups References for 3DSim paper SGU-CIPF
	Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties. [My Copy] Journal of molecular biology, Vol. 315, No. 4. (25 January 2002), pp. 771-786. by Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz posted to bioinformatics classification protein protein_structure snp by marcius to the group BioinfoCIPF on 2006-01-17 19:13:45 as along with 1 person and 3 groups caporaso References for 3DSim paper biomedical-nlp SGU-CIPF
	Sequence-based prediction of pathological mutations. [My Copy] Proteins, Vol. 57, No. 4. (1 December 2004), pp. 811-819. by C. Ferrer-Costa, M. Orozco, X. de la Cruz posted to bioinformatics classification protein snp by marcius to the group BioinfoCIPF on 2006-01-17 19:13:07 as along with 1 person and 2 groups chrn References for 3DSim paper SGU-CIPF
	Simulation of non-specific proteinmRNA interactions [My Copy] Nucleic Acids Research, Vol. 33, No. 21. (2005), pp. 6694-6699. by James Magee, Jim Warwicker posted to biophysics computational_biology molecular_dynamics protein rna by marcius to the group BioinfoCIPF on 2006-01-12 19:13:27 as along with 1 group SGU-CIPF
	BioThesaurus: a web-based thesaurus of protein and gene names [My Copy] Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 103-105. by Hongfang Liu, Zhang-Zhi Hu, Jian Zhang, Cathy Wu posted to bioinformatics protein servers text_mining by marcius to the group BioinfoCIPF on 2006-01-12 19:09:28 as along with 4 people and 1 group eweaver t11 moonbasilisk mircea SGU-CIPF

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structure	1111
interaction	521
evolution	473
folding	420
prediction	411
membrane	310
network	285
review	275
bioinformatics	266
function	253
sequence	219
database	199
alignment	191
binding	180
docking	155
dynamics	150
domain	145
rna	134
nmr	126
expression	125
design	118
gene	118
yeast	117
dna	115
networks	111
interactions	110
modeling	99
ligand	92
classification	90
enzyme	89
simulation	87
modelling	86
fold	81
electrostatics	79
proteomics	76
drug	71
stability	70
complex	68
biology	67
molecular	67
methods	66
mutation	66
algorithms	65
genome	65
amaranthus	63
ppi	63
model	62
mrna	60
experiment	59
tlb	59
md	58
algorithm	57
kinase	57
major-proposal	56
analysis	55
cell	55
lipid	53
motif	52
structural-biology	51
annotation	50
protein-protein	50
genomics	49
method	47
enzymatic_hydrolysis	46
transcription	46
homology	45
ribosome	45
aggregation	44
comps	44
cell-free	43
translation	43
microarray	42
bacteria	41
clustering	41
interface	41
whey	41
software	40
surface	40
energy	39
proteins	39
conformation	38
peptide	38
potential	38
recognition	38
localization	37
pdb	37
site	37
fluorescence	36
selection	36
disease	35
nlp	35
phylogeny	35
aravind	34
computational	34
correlation	34
scp	34
virus	34
acid	33
bio	33
phosphorylation	33

Group: BioinfoCIPF - with tag protein [44 articles] Export

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