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Group: bioinplant - with tag ncrna [25 articles]

Recent papers posted by members of the bioinplant group with tag ncrna
  • An ICE pattern crystallizes
    Nat Genet, Vol. 35, No. 1. (2003), pp. 11-12.
    by Laura Spahn, Denise P Barlow
    posted to ncrna promoter by bsmagic to the group bioinplant on 2006-11-16 13:32:50 as ** along with 1 group Bioinformatics
  • Molecular evolution of a microRNA cluster in the PWS/AS region among mammals.
    Gene (1 March 2005)
    by Keisuke Onishi, Shintaroh Ueda
    posted to microrna ncrna evolution by bsmagic to the group bioinplant on 2006-11-16 13:31:06 as ** along with 1 person and 1 group mtagaya Bioinformatics
  • Experimental approaches to identify non-coding RNAs.
    Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 635-646.
    by A Hüttenhofer, J Vogel
    posted to ncrna prediction experimental by bsmagic to the group bioinplant on 2006-11-16 13:30:56 as ** along with 7 people and 6 groups marcius eweaver perrywoo dchughes tabu mtagaya cdawson Bioinformatics G4ID BioinfoCIPF SGU-CIPF GIG Genetics-of-Gambling
  • Mass spectrometry of RNA: linking the genome to the proteome.
    Brief Funct Genomic Proteomic, Vol. 5, No. 1. (March 2006), pp. 87-95.
    by Z Meng, PA Limbach
    posted to genomics protemics ncrna spectrometry transcriptomics by bsmagic to the group bioinplant on 2006-11-16 13:30:00 as ** along with 1 person and 1 group jayster4 Bioinformatics
  • A comparison of RNA folding measures.
    BMC Bioinformatics, Vol. 6, No. 1. (3 October 2005)
    by Eva Freyhult, Paul P Gardner, Vincent Moulton
    posted to ncrna review folding by bsmagic to the group bioinplant on 2006-11-16 13:28:17 as ** along with 5 people and 3 groups imouthesmp marcius eckart_bindewald mtagaya Kiarostami Bioinformatics BioinfoCIPF SGU-CIPF
  • Non-coding RNA.
    Hum Mol Genet, Vol. 15, No. suppl_1. (15 April 2006)
    by John S S Mattick, Igor V V Makunin
    posted to ncrna review by bsmagic to the group bioinplant on 2006-11-16 13:28:00 as ** along with 11 people and 6 groups tuck marcius eckart_bindewald tardigrade andersbj dchughes mtagaya scroft cabbagezs bertelsen robertkofler Bioinformatics microRNA G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
  • Evolution of small nucleolar RNAs in nematodes.
    Nucleic Acids Res, Vol. 34, No. 9. (2006), pp. 2676-2685.
    by A Zemann, A op de Bekke, M Kiefmann, J Brosius, J Schmitz
    posted to evolution ncrna by bsmagic to the group bioinplant on 2006-11-16 13:27:50 as ** along with 2 people and 2 groups tharris mtagaya C. elegans / WormBase Bioinformatics
  • Evolutionary patterns of non-coding RNAs
    Theory in Biosciences, Vol. 123, No. 4. (15 April 2005), pp. 301-369.
    by Athanasius F Bompfunewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L Hofacker, Jorg Lehmann, Kristin Missal, Axel Mosig, Bettina Muller, Sonja J Prohaska
    posted to evolution ncrna by bsmagic to the group bioinplant on 2006-11-16 13:27:43 as ** along with 3 people and 1 group evaf Eonwe ilh Bioinformatics
  • Clusters of internally primed transcripts reveal novel long noncoding RNAs.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by M Furuno, KC Pang, N Ninomiya, S Fukuda, MC Frith, C Bult, C Kai, J Kawai, P Carninci, Y Hayashizaki, JS Mattick, H Suzuki
    posted to ncrna promoter prediction by bsmagic to the group bioinplant on 2006-11-16 13:27:33 as ** along with 3 people and 3 groups dchughes mtagaya jayster4 Bioinformatics G4ID Genetics-of-Gambling
  • StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1593-1599.
    by Dalli, Deniz, Wilm, Andreas, Mainz, Indra, Steger, Gerhard
    posted to algorithm motif ncrna alignment by bsmagic to the group bioinplant on 2006-11-16 13:27:19 as ** along with 4 people and 3 groups marcius eckart_bindewald ilh papamicd Bioinformatics BioinfoCIPF SGU-CIPF
  • CMfinder--a covariance model based RNA motif finding algorithm.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 445-452.
    by Z Yao, Z Weinberg, WL Ruzzo
    posted to algorithm motif ncrna by bsmagic to the group bioinplant on 2006-11-16 13:25:30 as ** along with 1 person and 1 group arcticrasta Bioinformatics
  • Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.
    J Exp Zoolog B Mol Dev Evol, Vol. 306, No. 4. (15 July 2006), pp. 379-392.
    by K Missal, X Zhu, D Rose, W Deng, G Skogerbø, R Chen, PF Stadler
    posted to ncrna prediction by bsmagic to the group bioinplant on 2006-11-16 13:22:59 as ** along with 1 person and 2 groups tharris C. elegans / WormBase Bioinformatics
  • Distinguishing protein-coding from non-coding RNAs through support vector machines.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by J Liu, J Gough, B Rost
    posted to algorithm ncrna prediction svm by bsmagic to the group bioinplant on 2006-11-16 13:22:51 as ** along with 1 person and 1 group ilh Bioinformatics
  • The Functional Genomics of Noncoding RNA
    Science, Vol. 309, No. 5740. (02 September 2005), pp. 1527-1528.
    by John S Mattick
    posted to functional genomics ncrna by bsmagic to the group bioinplant on 2006-11-16 13:22:23 as ** along with 10 people and 7 groups biozhang2001 lyongu marcius alexg eckart_bindewald dchughes mtagaya cmm neveaire jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab BioinfoCIPF SGU-CIPF
  • Noncoding regulatory RNAs database
    Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 429-431.
    by Maciej Szymanski, Volker A Erdmann, Jan Barciszewski
    posted to database ncrna regulatory by bsmagic to the group bioinplant on 2006-11-16 13:22:11 as ** along with 2 people and 1 group arcticrasta mtagaya Bioinformatics
  • Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model.
    Gene, Vol. 372 (10 May 2006), pp. 171-181.
    by N Yachie, K Numata, R Saito, A Kanai, M Tomita
    posted to algorithm ncrna prediction by bsmagic to the group bioinplant on 2006-11-16 13:21:14 as ** along with 1 group Bioinformatics
  • NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by T Wu, J Wang, C Liu, Y Zhang, B Shi, X Zhu, Z Zhang, G Skogerbø, L Chen, H Lu, Y Zhao, R Chen
    posted to database interaction ncrna protein by bsmagic to the group bioinplant on 2006-11-16 13:20:29 as ** along with 1 person and 1 group mtagaya Bioinformatics
  • Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray
    Nucl. Acids Res., Vol. 34, No. 10. (31 May 2006), pp. 2976-2983.
    by Housheng He, Lun Cai, Geir Skogerbo, Wei Deng, Tao Liu, Xiaopeng Zhu, Yudong Wang, Dong Jia, Zhihua Zhang, Yong Tao, Haipan Zeng, Muhammad N Aftab, Yan Cui, Guozhen Liu, Runsheng Chen
    posted to expression transcriptome ncrna microarray profiling by bsmagic to the group bioinplant on 2006-11-16 13:19:45 as ** along with 4 people and 3 groups tharris tardigrade mtagaya cdawson C. elegans / WormBase Bioinformatics GIG
  • Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression.
    Genome Res, Vol. 16, No. 1. (January 2006), pp. 20-29.
    by W Deng, X Zhu, G Skogerbø, Y Zhao, Z Fu, Y Wang, H He, L Cai, H Sun, C Liu, B Li, B Bai, J Wang, D Jia, S Sun, H He, Y Cui, Y Wang, D Bu, R Chen
    posted to function ncrna transcriptome by bsmagic to the group bioinplant on 2006-11-16 13:18:54 as ** along with 3 people and 4 groups tharris imouthesmp marcius C. elegans / WormBase Bioinformatics BioinfoCIPF SGU-CIPF
  • PSoL: a positive sample only learning algorithm for finding non-coding RNA genes.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2590-2596.
    by C Wang, C Ding, RF Meraz, SR Holbrook
    posted to algorithm ncrna prediction by bsmagic to the group bioinplant on 2006-11-16 13:16:54 as ** along with 1 person and 1 group plofje Bioinformatics
  • Computational identification of noncoding RNAs in E. coli by comparative genomics.
    Curr Biol, Vol. 11, No. 17. (4 September 2001), pp. 1369-1373.
    by E Rivas, RJ Klein, TA Jones, SR Eddy
    posted to comparative genomics ncrna prediction by bsmagic to the group bioinplant on 2006-11-16 13:12:45 as ** along with 5 people and 3 groups evaf marcius eckart_bindewald arcticrasta dquest Bioinformatics BioinfoCIPF SGU-CIPF
  • Non-coding RNA genes and the modern RNA world.
    Nat Rev Genet, Vol. 2, No. 12. (December 2001), pp. 919-929.
    by SR Eddy
    posted to ncrna review by bsmagic to the group bioinplant on 2006-11-16 13:11:54 as ** along with 3 people and 1 group evaf eckart_bindewald arcticrasta Bioinformatics
  • Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming.
    Nucleic Acids Res, Vol. 33, No. 10. (2005), pp. 3263-3270.
    by P Saetrom, R Sneve, KI Kristiansen, O Snøve, T Grünfeld, T Rognes, E Seeberg
    posted to algorithm genetic_programming ncrna prediction by bsmagic to the group bioinplant on 2006-11-16 13:10:07 as ** along with 2 people and 1 group ujh numata Bioinformatics
  • A split promoter for a eucaryotic tRNA gene.
    Cell, Vol. 24, No. 2. (May 1981), pp. 573-585.
    by H Hofstetter, A Kressman, ML Birnstiel
    posted to ncrna promoter special by bsmagic to the group bioinplant on 2006-11-16 13:03:27 as ** along with 1 person and 1 group mtagaya Bioinformatics
  • A plant miRNA contributes to antibacterial resistance by repressing auxin signaling.
    Science, Vol. 312, No. 5772. (21 April 2006), pp. 436-439.
    by L Navarro, P Dunoyer, F Jay, B Arnold, N Dharmasiri, M Estelle, O Voinnet, JD Jones
    posted to microrna mirna ncrna plant resistance by bsmagic to the group bioinplant on 2006-11-16 12:53:43 as ** along with 1 person and 1 group tardigrade Bioinformatics
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