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Group: LabCompMed - with tag structure [65 articles]

Recent papers posted by members of the LabCompMed group with tag structure
  • The 2.6 Angstrom Crystal Structure of a Human A2A Adenosine Receptor Bound to an Antagonist
    Science (2 October 2008), 1164772.
    by Veli-Pekka Jaakola, Mark T Griffith, Michael A Hanson, Vadim Cherezov, Ellen Y Chien, Robert J Lane, Adriaan P Ijzerman, Raymond C Stevens
    posted to xray structure ligands gpcr docking crystallography binding by xdeupi to the group LabCompMed on 2008-10-15 10:02:27 as **
  • Structure of a β1-adrenergic G-protein-coupled receptor
    Nature (25 June 2008)
    by Tony Warne, Maria J Serrano-Vega, Jillian G Baker, Rouslan Moukhametzianov, Patricia C Edwards, Richard Henderson, Andrew GW Leslie, Christopher G Tate, Gebhard FX Schertler
    posted to xray structure ligands drug docking binding b2ar by xdeupi to the group LabCompMed on 2008-09-16 10:15:18 as ** along with 2 people and 1 group merj TonyIvetac McCammon
  • Analysis of side-chain rotamers in transmembrane proteins.
    Biophysical journal, Vol. 87, No. 5. (November 2004), pp. 3460-3469.
    by AK Chamberlain, JU Bowie
    posted to flexibility hbond helix membrane_proteins ser serthr_paper structure thr transmembrane by xdeupi to the group LabCompMed on 2008-05-15 11:35:48 as ** along with 1 person carlk
  • Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region.
    The Journal of biological chemistry (6 May 2008)
    by Tatsuro Shimamura, Kenji Hiraki, Naoko Takahashi, Tetsuya Hori, Hideo Ago, Katsuyoshi Masuda, Koji Takio, Masaji Ishiguro, Masashi Miyano
    posted to crystallography cterm gpcr rhodopsin structure xray by xdeupi to the group LabCompMed on 2008-05-13 16:19:24 as **
  • notes Transmembrane proteins in the Protein Data Bank: identification and classification.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2964-2972.
    by GE Tusnády, Z Dosztányi, I Simon
    posted to helix membrane_proteins structure by xdeupi to the group LabCompMed on 2008-04-08 13:55:53 as ** along with 4 people kallberg chrn sebk viktor21614
  • Retinylidene proteins: structures and functions from archaea to humans.
    Annual review of cell and developmental biology, Vol. 16 (2000), pp. 365-392.
    by JL Spudich, CS Yang, KH Jung, EN Spudich
    posted to retinal retinal_binding_proteins review rhodopsin structure by xdeupi to the group LabCompMed on 2008-04-08 11:33:18 as **
  • Crystal structure of rhodopsin: implications for vision and beyond.
    Current opinion in structural biology, Vol. 11, No. 4. (August 2001), pp. 420-426.
    by T Okada, K Palczewski
    posted to retinal retinal_binding_proteins review rhodopsin structure by xdeupi to the group LabCompMed on 2008-04-08 11:29:03 as **
  • A concept for G protein activation by G protein-coupled receptor dimers: the transducin/rhodopsin interface.
    Photochem Photobiol Sci, Vol. 3, No. 6. (June 2004), pp. 628-638.
    by S Filipek, KA Krzysko, D Fotiadis, Y Liang, DA Saperstein, A Engel, K Palczewski
    posted to structure rhodopsin modeling gproteins active-state by xdeupi to the group LabCompMed on 2007-07-11 16:54:09 as ** along with 1 person cen4ik
  • Refinement of a homology model of the mu-opioid receptor using distance constraints from intrinsic and engineered zinc-binding sites.
    Biochemistry, Vol. 43, No. 27. (13 July 2004), pp. 8700-8710.
    by CB Fowler, ID Pogozheva, H LeVine, HI Mosberg
    posted to theory structure opioid modeling active-state by xdeupi to the group LabCompMed on 2007-07-11 16:51:53 as ** along with 1 person merj
  • Complex of an active mu-opioid receptor with a cyclic peptide agonist modeled from experimental constraints.
    Biochemistry, Vol. 43, No. 50. (21 December 2004), pp. 15796-15810.
    by CB Fowler, ID Pogozheva, AL Lomize, H LeVine, HI Mosberg
    posted to structure opioid modeling gproteins active-state by xdeupi to the group LabCompMed on 2007-07-11 16:50:15 as **
  • Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters?
    J. Gen. Physiol., Vol. 129, No. 5. (30 April 2007), pp. 353-356.
    by Gunnar von Heijne
    posted to transmembrane structure review membrane_proteins helix by xdeupi to the group LabCompMed on 2007-06-29 21:20:58 as ** along with 1 person thaliana
  • Critical role for the second extracellular loop in the binding of both orthosteric and allosteric G protein-coupled receptor ligands.
    J Biol Chem (25 June 2007)
    by Vimesh A A Avlani, Karen J J Gregory, Craig J J Morton, Michael W W Parker, Patrick M M Sexton, Arthur Christopoulos
    posted to structure loops ligands ecl2 binding activation by xdeupi to the group LabCompMed on 2007-06-29 21:12:42 as **
  • G-protein-coupled receptor signalling through protein networks.
    Biochem Soc Trans, Vol. 35, No. Pt 1. (February 2007), pp. 23-27.
    by AD Strosberg, C Nahmias
    posted to structure review pharmacology gpcr b2ar by xdeupi to the group LabCompMed on 2007-06-29 21:10:57 as **
  • Comparison of stability predictions and simulated unfolding of rhodopsin structures.
    Photochem Photobiol, Vol. 83, No. 2. (r 2007), pp. 351-363.
    by O Tastan, E Yu, M Ganapathiraju, A Aref, AJ Rader, J Klein-Seetharaman
    posted to transmembrane structure rhodopsin mutation membrane_proteins helix folding by xdeupi to the group LabCompMed on 2007-06-25 10:08:49 as **
  • Refinement of Protein Structures by Iterative Comparative Modeling and CryoEM Density Fitting
    Journal of Molecular Biology, Vol. 357, No. 5. (14 April 2006), pp. 1655-1668.
    by Maya Topf, Matthew L Baker, Marc A Marti-Renom, Wah Chiu, Andrej Sali
    posted to theory structure modeling em crystallography by xdeupi to the group LabCompMed on 2007-06-12 11:28:16 as **
  • Combined solid state and solution NMR studies of alpha,epsilon-15N labeled bovine rhodopsin.
    J Biomol NMR, Vol. 37, No. 4. (April 2007), pp. 303-312.
    by K Werner, I Lehner, HK Dhiman, C Richter, C Glaubitz, H Schwalbe, J Klein-Seetharaman, HG Khorana
    posted to structure rhodopsin nmr by xdeupi to the group LabCompMed on 2007-06-02 19:27:51 as ** along with 2 people InesLehner netterpaladin
  • An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies
    Protein Eng., Vol. 9, No. 11. (1996), pp. 1063-1065.
    by Lawrence A Kelley, Stephen P Gardner, Michael J Sutcliffe
    posted to theory structure modeling md helix dynamics by xdeupi to the group LabCompMed on 2007-05-31 10:31:28 as **
  • Structural models of class a g protein-coupled receptors as a tool for drug design: insights on transmembrane bundle plasticity.
    Curr Top Med Chem, Vol. 7, No. 10. (2007), pp. 999-1006.
    by X Deupi Nicole Dölker María Luz López-Rodríguez Mercedes Campillo Juan A Ballesteros And Leonardo Pardo, N Dölker, ML López-Rodríguez, M Campillo, JA Ballesteros, L Pardo
    posted to structure plasticity modeling gpcr binding by xdeupi to the group LabCompMed on 2007-05-28 08:51:54 as **
  • Computational prediction of atomic structures of helical membrane proteins aided by EM maps.
    Biophys J (11 May 2007)
    by Julio A A Kovacs, Mark Yeager, Ruben Abagyan
    posted to structure modeling membrane_proteins em crystallography by xdeupi to the group LabCompMed on 2007-05-21 09:41:00 as ** along with 1 person thaliana
  • Determining membrane protein structures: still a challenge!
    Trends Biochem Sci (2 May 2007)
    by Jean-Jacques J Lacapère, Eva Pebay-Peyroula, Jean-Michel M Neumann, Catherine Etchebest
    posted to xray structure review nmr membrane_proteins dynamics by xdeupi to the group LabCompMed on 2007-05-15 12:52:21 as **** along with 1 person gcaltabiano
  • Helix packing moments reveal diversity and conservation in membrane protein structure.
    J Mol Biol, Vol. 337, No. 3. (26 March 2004), pp. 713-729.
    by W Liu, M Eilers, AB Patel, SO Smith
    posted to transmembrane structure ser sequence rhodopsin membrane_proteins helix gpcr by xdeupi to the group LabCompMed on 2007-04-26 13:49:38 as *****
  • Peptide design and structural characterization of a GPCR loop mimetic.
    Biopolymers (18 April 2007)
    by Truc-Chi T C Pham, Richard W W Kriwacki, Abby L L Parrill
    posted to structure modeling loops gpcr by xdeupi to the group LabCompMed on 2007-04-23 10:24:23 as **
  • Pharmacogenomic and structural analysis of constitutive g protein-coupled receptor activity.
    Annu Rev Pharmacol Toxicol, Vol. 47 (2007), pp. 53-87.
    by MJ Smit, HF Vischer, RA Bakker, A Jongejan, H Timmerman, L Pardo, R Leurs
    posted to switch structure review modeling gpcr disease activation by xdeupi to the group LabCompMed on 2007-04-17 12:35:15 as **
  • Atomic-level characterization of disordered protein ensembles
    Current Opinion in Structural Biology, Vol. 17, No. 1. (February 2007), pp. 3-14.
    by Tanja Mittag, Julie D Forman-Kay
    posted to structure nmr modeling icl3 folding disorder cterm crystallography by xdeupi to the group LabCompMed on 2007-03-27 16:17:12 as ** along with 4 people apaydin cactus biehl allmensch
  • Method To Assess Packing Quality of Transmembrane alpha-Helices in Proteins. 1. Parametrization Using Structural Data.
    J Chem Inf Model (20 March 2007)
    by Anton O Chugunov, Valery N Novoseletsky, Dmitry E Nolde, Alexander S Arseniev, Roman G Efremov
    posted to structure modeling membrane_proteins gpcr by xdeupi to the group LabCompMed on 2007-03-26 10:07:02 as ** along with 1 person superpyrin
  • Structure and conformational changes in the C-terminal domain of the beta 2-adrenoceptor: Insights from fluorescence resonance energy tranfer studies.
    J Biol Chem (8 March 2007)
    by Sebastien Granier, Samuel Kim, Aaron M M Shafer, Venkata R P R Ratnala, Juan J J Fung, Richard N N Zare, Brian K K Kobilka
    posted to structure fret dynamics cterm b2ar activation by xdeupi to the group LabCompMed on 2007-03-21 11:39:56 as **
  • Discontinuous membrane helices in transport proteins and their correlation with function.
    J Struct Biol (1 February 2007)
    by Emanuela Screpanti, Carola Hunte
    posted to transmembrane structure membrane_proteins channel by xdeupi to the group LabCompMed on 2007-03-21 11:35:11 as ** along with 1 person Guff32
  • Secondary structure, dynamics, and topology of a seven-helix receptor in native membranes, studied by solid-state NMR spectroscopy.
    Angew Chem Int Ed Engl, Vol. 46, No. 3. (2007), pp. 459-462.
    by M Etzkorn, S Martell, OC Andronesi, K Seidel, M Engelhard, M Baldus
    posted to structure nmr membrane_proteins by xdeupi to the group LabCompMed on 2007-03-21 11:16:40 as **
  • Two-dimensional solid-state NMR applied to a chimeric potassium channel.
    J Recept Signal Transduct Res, Vol. 26, No. 5-6. (2006), pp. 379-393.
    by A Lange, K Giller, O Pongs, S Becker, M Baldus
    posted to channel dynamics membrane_proteins nmr structure by xdeupi to the group LabCompMed on 2007-03-12 14:23:33 as **
  • From Interactions of Single Transmembrane Helices to Folding of alpha-Helical Membrane Proteins: Analyzing Transmembrane Helix-Helix Interactions in Bacteria.
    Curr Protein Pept Sci, Vol. 8, No. 1. (February 20067), pp. 45-61.
    by Dirk Schneider, Carmen Finger, Alexander Prodöhl, Thomas Volkmer
    posted to helix membrane_proteins review sequence structure transmembrane by xdeupi to the group LabCompMed on 2007-02-26 09:06:23 as **
  • Progress in structure prediction of alpha-helical membrane proteins.
    Curr Opin Struct Biol (3 July 2006)
    by Sarel J J Fleishman, Nir Ben-Tal
    posted to helix membrane_proteins review structure transmembrane by xdeupi to the group LabCompMed on 2007-02-13 15:11:51 as ***** along with 1 person wouterboomsma
  • Membrane-protein topology
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 12., pp. 909-918.
    by Gunnar von Heijne
    posted to genome membrane_proteins review structure transmembrane by xdeupi to the group LabCompMed on 2006-12-11 10:31:16 as ** along with 3 people and 2 groups dchughes nm merj G4ID Genetics-of-Gambling
  • G-protein coupled receptor structure.
    Biochim Biophys Acta (10 October 2006)
    by Philip L L Yeagle, Arlene D D Albert
    posted to activation gpcr review rhodopsin structure by xdeupi to the group LabCompMed on 2006-11-17 20:57:15 as ***** along with 4 people gcaltabiano merj superpyrin adamsdi
  • Dynamic models of G-protein coupled receptor dimers: indications of asymmetry in the rhodopsin dimer from molecular dynamics simulations in a POPC bilayer.
    J Comput Aided Mol Des (7 November 2006)
    by Marta Filizola, Simon X Wang, Harel Weinstein
    posted to activation dynamics gpcr lipids md membrane rhodopsin structure by xdeupi to the group LabCompMed on 2006-11-14 16:42:29 as **
  • A structure-based simulation approach for electron paramagnetic resonance spectra using molecular and stochastic dynamics simulations.
    Biophys J, Vol. 91, No. 7. (1 October 2006), pp. 2647-2664.
    by C Beier, HJ Steinhoff
    posted to dynamics loops md modeling spin_labeling structure by xdeupi to the group LabCompMed on 2006-10-30 18:37:07 as **
  • Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (Apr 2002), pp. 5982-7.
    by Tetsuji Okada, Yoshinori Fujiyoshi, Maria Silow, Javier Navarro, Ehud M Landau, Yoshinori Shichida
    posted to bibtex-nicole crystallography gpcr rhodopsin structure water by ndoelker to the group LabCompMed on 2006-10-30 16:52:59 as read
  • Synthesis and structure-activity relationships of a new model of arylpiperazines. 8. Computational simulation of ligand-receptor interaction of 5-HT(1A)R agonists with selectivity over alpha1-adrenoceptors.
    J Med Chem, Vol. 48, No. 7. (Apr 2005), pp. 2548-2558.
    by Maria, Esther Fernã¡ndez, Bellinda Benhamãº, Ignacio Tejada, David Ayala, Alma Viso, Mercedes Campillo, Leonardo Pardo, Mercedes Delgado, Jorge Manzanares, Josã© A Fuentes
    posted to 5ht1a bibtex-nicole gpcr modeling structure by ndoelker to the group LabCompMed on 2006-10-30 16:52:57 as read
  • dummy
    by Dummy
    posted to 5ht1a activation agonist amber amine arrestin b2ar bimane binding cam ccr5 channel chemokine chimera crystallography cterm cxcr1 d250 dimer disease drug dry dynamics ecl2 evolution expression fluorescence folding fret genome gly gpcr gproteins hbond helix helix8 histamine hormone icl3 imaging internalization ionic leukotriene lhr ligands lipids lock loops md membrane modeling mutation n745 n749 nmr no-tag npxxy nterm opioid pharmacology polymorphism pro-kink protonation review rhodopsin s542 sequence ser spin_labeling structure switch test thr thyrotropin tm2 tm3 tm5 tm6 tm7 toggle transmembrane trp txp w648 by xdeupi to the group LabCompMed on 2006-10-30 12:30:16 as ** along with 2 people jessicaopacic ivanrt
  • Local peptide movement in the photoreaction intermediate of rhodopsin.
    Proc Natl Acad Sci U S A, Vol. 103, No. 34. (22 August 2006), pp. 12729-12734.
    by H Nakamichi, T Okada
    posted to structure rhodopsin retinal crystallography activation by xdeupi to the group LabCompMed on 2006-10-26 11:39:03 as **
  • Crystallographic analysis of primary visual photochemistry.
    Angew Chem Int Ed Engl, Vol. 45, No. 26. (26 June 2006), pp. 4270-4273.
    by H Nakamichi, T Okada
    posted to activation crystallography rhodopsin structure by xdeupi to the group LabCompMed on 2006-10-26 11:36:51 as **
  • Crystal structure of a photoactivated deprotonated intermediate of rhodopsin.
    Proc Natl Acad Sci U S A (23 October 2006)
    by David Salom, David T T Lodowski, Ronald E E Stenkamp, Isolde Le Trong, Marcin Golczak, Beata Jastrzebska, Tim Harris, Juan A A Ballesteros, Krzysztof Palczewski
    posted to activation crystallography dimer rhodopsin structure by xdeupi to the group LabCompMed on 2006-10-26 09:58:37 as ***** along with 1 person cen4ik
  • Helix-packing motifs in membrane proteins.
    Proc Natl Acad Sci U S A (5 September 2006)
    by R F S F Walters, W F F Degrado
    posted to folding helix membrane modeling sequence structure transmembrane by xdeupi to the group LabCompMed on 2006-09-13 10:25:08 as **** along with 5 people hc5428 thaliana dgront sebk chgjb
  • Mutational and bioinformatics analysis of proline- and glycine-rich motifs in vesicular acetylcholine transporter
    Journal of Neurochemistry, Vol. 98, No. 5. (September 2006), pp. 1551-1559.
    by Chandrasekaran, Ananda, Ojeda, M Ana, Kolmakova, G Natalia, Parsons, M Stanley
    posted to activation channel gly helix mutation pro-kink structure transmembrane by xdeupi to the group LabCompMed on 2006-09-05 11:43:55 as **
  • Asymmetric stability among the transmembrane helices of lactose permease.
    Biochemistry, Vol. 45, No. 26. (4 July 2006), pp. 8088-8095.
    by M Bennett, R D'Rozario, MS Sansom, PL Yeagle
    posted to activation dynamics helix md modeling structure transmembrane by xdeupi to the group LabCompMed on 2006-09-05 11:09:02 as **
  • Novel mutants of the human beta1-adrenergic receptor reveal amino acids relevant for receptor activation.
    J Biol Chem, Vol. 281, No. 26. (30 June 2006), pp. 18120-18125.
    by B Behr, C Hoffmann, G Ottolina, KN Klotz
    posted to activation agonist b2ar binding drug ligands modeling mutation pharmacology structure by xdeupi to the group LabCompMed on 2006-09-05 11:05:20 as ***
  • Structure and dynamics of dark-state bovine rhodopsin revealed by chemical cross-linking and high-resolution mass spectrometry.
    Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1303-1317.
    by RB Jacobsen, KL Sale, MJ Ayson, P Novak, J Hong, P Lane, NL Wood, GH Kruppa, MM Young, JS Schoeniger
    posted to dynamics gpcr modeling rhodopsin structure by xdeupi to the group LabCompMed on 2006-09-05 10:52:14 as **
  • The three-dimensional structure of the N-terminal domain of corticotropin-releasing factor receptors: sushi domains and the B1 family of G protein-coupled receptors.
    Ann N Y Acad Sci, Vol. 1070 (July 2006), pp. 105-119.
    by MH Perrin, CR Grace, R Riek, WW Vale
    posted to b2ar nterm structure by xdeupi to the group LabCompMed on 2006-09-05 10:22:30 as **
  • ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by E Granseth, H Viklund, A Elofsson
    posted to helix loops membrane modeling structure transmembrane by xdeupi to the group LabCompMed on 2006-09-05 10:16:39 as ***** along with 2 people thaliana chrn
  • The role of proline residues in the dynamics of transmembrane helices: the case of bacteriorhodopsin
    Molecular Membrane Biology, Vol. 23, No. 2. (8211), pp. 127-135.
    by Peralvarez-Marin, Alex, Bourdelande, Jose-Luis, Querol, Enric, Padros, Esteve
    posted to pro-kink structure activation crystallography helix mutation by xdeupi to the group LabCompMed on 2006-09-05 09:47:32 as **
  • The three-dimensional structure of bovine rhodopsin determined by electron cryomicroscopy.
    J Biol Chem, Vol. 278, No. 50. (12 December 2003), pp. 50217-50225.
    by A Krebs, PC Edwards, C Villa, J Li, GF Schertler
    posted to crystallography gpcr membrane rhodopsin structure by xdeupi to the group LabCompMed on 2006-07-25 15:17:32 as **
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