Register | Log in | FAQ      [?] 
Recent | Recommended | Search | Authors | Tags | Export

Group: SGU-CIPF - library [622 articles]

Recent papers posted by members of the SGU-CIPF group
  • Synthetic biologyEngineering Escherichia coli to see light
    Nature, Vol. 438, No. 7067. (23 November 2005), pp. 441-442.
    by Anselm Levskaya, Aaron A Chevalier, Jeffrey J Tabor, Zachary B Simpson, Laura A Lavery, Matthew Levy, Eric A Davidson, Alexander Scouras, Andrew D Ellington, Edward M Marcotte, Christopher A Voigt
    posted to bioengineering by marcius to the group SGU-CIPF on 2006-03-01 20:59:33 as ***** along with 1 person and 1 group dansullivanblk BioinfoCIPF
  • Derivation of protein-specific pair potentials based on weak sequence fragment similarity.
    Proteins, Vol. 38, No. 1. (1 January 2000), pp. 3-16.
    by J Skolnick, A Kolinski, A Ortiz
    posted to biophysics model_assessment statistical_potentials by marcius to the group SGU-CIPF on 2005-10-21 20:27:37 as ***** along with 2 people and 1 group dgront mcbla BioinfoCIPF
  • Linear motifs: evolutionary interaction switches.
    FEBS Lett, Vol. 579, No. 15. (13 June 2005), pp. 3342-3345.
    by V Neduva, RB Russell
    posted to bioinformatics protein_fragments review by marcius to the group SGU-CIPF on 2005-10-28 19:09:47 as **** along with 3 people and 1 group chad_davis niallhaslam Evangelia BioinfoCIPF
  • Basis for structural diversity in homologous RNAs.
    Science, Vol. 306, No. 5693. (1 October 2004), pp. 104-107.
    by AS Krasilnikov, Y Xiao, T Pan, A Mondragón
    posted to evolution rna by marcius to the group SGU-CIPF on 2005-10-23 03:14:38 as **** along with 1 group BioinfoCIPF
  • ARTS: alignment of RNA tertiary structures.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by O Dror, R Nussinov, H Wolfson
    posted to algorithms rna structure_alignment by marcius to the group SGU-CIPF on 2005-10-23 03:11:36 as **** along with 1 group BioinfoCIPF
  • MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3352-3359.
    by S Siebert, R Backofen
    posted to algorithms bioinformatics rna sequence_alignment by marcius to the group SGU-CIPF on 2005-10-23 03:10:32 as **** along with 2 people and 1 group arcticrasta ilh BioinfoCIPF
  • Comparative molecular dynamics-Similar folds and similar motions?
    Proteins (17 October 2005)
    by Andrew Pang, Yalini Arinaminpathy, Mark S P S Sansom, Philip C C Biggin
    posted to biophysics computational_biology molecular_dynamics protein_structure by marcius to the group SGU-CIPF on 2005-10-22 16:56:55 as **** along with 1 group BioinfoCIPF
  • Evaluation of domain prediction in CASP6.
    Proteins (26 September 2005)
    by Chin-Hsien H Tai, Woei-Jyh J Lee, James J J Vincent, Byungkook Lee
    posted to cafasp casp model_evaluation protein_domains by marcius to the group SGU-CIPF on 2005-10-22 09:08:12 as **** along with 1 person and 1 group nigham BioinfoCIPF
  • Assessment of predictions submitted for the CASP6 comparative modelling category.
    Proteins (26 September 2005)
    by Michael Tress, Iakes Ezkurdia, Osvaldo Graña, Gonzalo López, Alfonso Valencia
    posted to cafasp casp comparative_modeling protein_structure structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 08:59:31 as **** along with 3 people and 1 group nigham ffranca magia215 BioinfoCIPF
  • Prediction of novel and analogous folds using fragment assembly and fold recognition.
    Proteins (26 September 2005)
    by D T T Jones, K Bryson, A Coleman, L J J McGuffin, M I I Sadowski, J S S Sodhi, J J J Ward
    posted to cafasp casp comparative_modeling model_assessment protein_fragments protein_structure structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 08:57:29 as **** along with 1 group BioinfoCIPF
  • Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation.
    Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351.
    by B Qian, AR Ortiz, D Baker
    posted to biophysics clustering comparative_modeling protein_structure structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 05:00:32 as **** along with 4 people and 3 groups ana barry lna dgront structural_bioinformatics Bioinformatics BioinfoCIPF
  • Systemic determinants of gene evolution and function
    Molecular Systems Biology, Vol. 1, No. 1. (13 September 2005), pp. msb4100029-E1-msb4100029-E2.
    by Eugene V Koonin
    posted to evolution protein_function systems_biology by marcius to the group SGU-CIPF on 2005-10-22 04:22:41 as **** along with 4 people and 2 groups ataheri Schmidtc bluto niallhaslam plant-development BioinfoCIPF
  • Intracellular RNA sorting, transport and localization
    Nature Structural & Molecular Biology, Vol. 12, No. 10., pp. 826-829.
    by Ralf-Peter Jansen, Michael Kiebler
    posted to meeting rna systems_biology by marcius to the group SGU-CIPF on 2005-10-22 00:44:12 as **** along with 1 person and 1 group imouthesmp BioinfoCIPF
  • ROCR: visualizing classifier performance in R.
    Bioinformatics (11 August 2005)
    by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
    posted to classification servers software by marcius to the group SGU-CIPF on 2005-10-21 08:28:13 as **** along with 9 people and 3 groups bertelsen BragilMassoud ana barry Ayest lyongu schlauchi gokhan za structural_bioinformatics Bioinformatics BioinfoCIPF
  • Why highly expressed proteins evolve slowly.
    Proc Natl Acad Sci U S A (21 September 2005)
    by D Allan A Drummond, Jesse D D Bloom, Christoph Adami, Claus O O Wilke, Frances H H Arnold
    posted to evolution pleiotropy protein_function by marcius to the group SGU-CIPF on 2005-10-21 02:44:11 as **** along with 14 people and 4 groups wilbur balicea RamuAnandakrishnan rklancer stevanspringer bjorns imouthesmp aprasad dayjm Einat xwbcn penka balabu malcook structural_bioinformatics Nie FAB-lab BioinfoCIPF
  • Structural similarity to bridge sequence space: finding new families on the bridges.
    Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1305-1314.
    by PK Shah, P Aloy, P Bork, RB Russell
    posted to bioinformatics classification clustering protein_structure structural_genomics by marcius to the group SGU-CIPF on 2005-10-28 19:11:21 as *** along with 2 people and 1 group eweaver drastic BioinfoCIPF
  • MicroRNA identification based on sequence and structure alignment.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3610-3614.
    by X Wang, J Zhang, F Li, J Gu, T He, X Zhang, Y Li
    posted to algorithms bioinformatics rna sequence_alignment structure_alignment by marcius to the group SGU-CIPF on 2005-10-23 03:17:36 as *** along with 2 people and 1 group eckart_bindewald bioinfo BioinfoCIPF
  • Noncoding RNA gene detection using comparative sequence analysis.
    BMC Bioinformatics, Vol. 2, No. 1. (2001)
    by E Rivas, SR Eddy
    posted to algorithms bioinformatics rna by marcius to the group SGU-CIPF on 2005-10-23 03:10:54 as *** along with 4 people and 1 group evaf eckart_bindewald arcticrasta jarasch BioinfoCIPF
  • A benchmark of multiple sequence alignment programs upon structural RNAs.
    Nucleic Acids Res, Vol. 33, No. 8. (2005), pp. 2433-2439.
    by PP Gardner, A Wilm, S Washietl
    posted to bioinformatics rna sequence_alignment by marcius to the group SGU-CIPF on 2005-10-23 03:09:57 as *** along with 1 group BioinfoCIPF
  • Fast and reliable prediction of noncoding RNAs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2454-2459.
    by S Washietl, IL Hofacker, PF Stadler
    posted to algorithms bioinformatics rna by marcius to the group SGU-CIPF on 2005-10-23 03:09:28 as *** along with 9 people and 2 groups gangli evaf dayjm eckart_bindewald tardigrade dquest Eonwe ilh raylim tulip BioinfoCIPF
  • Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.
    Proteins (26 September 2005)
    by Andrzej Koliński, Janusz M M Bujnicki
    posted to ab-initio bioinformatics comparative_modeling model_assessment structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 09:12:12 as *** along with 2 people and 1 group nigham dgront BioinfoCIPF
  • Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM.
    Proteins (26 September 2005)
    by David E E Kim, Dylan Chivian, Lars Malmström, David Baker
    posted to cafasp casp protein_domains ab-initio by marcius to the group SGU-CIPF on 2005-10-22 09:07:40 as *** along with 1 person and 1 group jwm BioinfoCIPF
  • Automatic annotation of protein function
    Current Opinion in Structural Biology, Vol. 15, No. 3. (June 2005), pp. 267-274.
    by Alfonso Valencia
    posted to bioinformatics protein_function review by marcius to the group SGU-CIPF on 2005-10-22 09:02:45 as *** along with 5 people and 1 group tjimenez dimka kuhn eweaver bootsy BioinfoCIPF
  • Domain definition and target classification for CASP6.
    Proteins (26 September 2005)
    by Michael Tress, Chin-Hsien H Tai, Guoli Wang, Iakes Ezkurdia, Gonzalo López, Alfonso Valencia, Byungkook Lee, Roland L L Dunbrack
    posted to cafasp casp protein_domains by marcius to the group SGU-CIPF on 2005-10-22 09:01:23 as *** along with 1 group BioinfoCIPF
  • Free modeling with Rosetta in CASP6.
    Proteins (26 September 2005)
    by Philip Bradley, Lars Malmström, Bin Qian, Jack Schonbrun, Dylan Chivian, David E E Kim, Jens Meiler, Kira M S M Misura, David Baker
    posted to ab-initio cafasp casp structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 08:58:20 as *** along with 4 people and 1 group jwm dgront schuylrp mirzazadeh BioinfoCIPF
  • SPARKS 2 and SP(3) servers in CASP 6.
    Proteins (26 September 2005)
    by Hongyi Zhou, Yaoqi Zhou
    posted to cafasp casp comparative_modeling model_assessment protein_structure structure_prediction by marcius to the group SGU-CIPF on 2005-10-22 08:56:27 as *** along with 1 person and 1 group j3xucite BioinfoCIPF
  • Effective energy function for proteins in solution.
    Proteins, Vol. 35, No. 2. (1 May 1999), pp. 133-152.
    by T Lazaridis, M Karplus
    posted to computational_biology model_assessment protein_folding software by marcius to the group SGU-CIPF on 2005-10-21 21:08:08 as *** along with 4 people and 1 group kgutwin bluvsh1 choonpeng hmk BioinfoCIPF
  • MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading.
    Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364.
    by L Lu, H Lu, J Skolnick
    posted to computational_biology protein_interactions protein_structure by marcius to the group SGU-CIPF on 2005-10-21 19:36:56 as *** along with 5 people and 4 groups ana bicko chad_davis sangeetha ruvido structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF
  • Moonlighting proteins
    Trends in Biochemical Sciences, Vol. 24, No. 1. (1 January 1999), pp. 8-11.
    by Constance J Jeffery
    posted to pleiotropy protein_function by marcius to the group SGU-CIPF on 2005-10-21 02:42:03 as *** along with 3 people and 2 groups stevanspringer tny benlin FAB-lab BioinfoCIPF
  • Recent acceleration of human adaptive evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (December 2007), pp. 20753-20758.
    by John Hawks, Eric T Wang, Gregory M Cochran, Henry C Harpending, Robert K Moyzis
    posted to evolution human positive selection by marcius to the group SGU-CIPF on 2008-02-06 09:19:00 as **
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to structure_prediction rna ab-initio by marcius to the group SGU-CIPF on 2007-09-01 10:46:02 as ** along with 6 people and 1 group reyez jwm eckart_bindewald zwang physics Ema BioinfoCIPF
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
    posted to ncrna genome classification by marcius to the group SGU-CIPF on 2007-06-15 11:16:53 as ** along with 11 people and 3 groups xingxu alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar EisenLab WetBiology BioinfoCIPF
  • RNA structure: experimental analysis.
    Curr Opin Microbiol (24 May 2007)
    by Brice Felden
    posted to structure rna review experimental by marcius to the group SGU-CIPF on 2007-06-12 12:56:46 as ** along with 3 people and 1 group penka emidio_capriotti debatebob BioinfoCIPF
  • RNA conformational classes.
    Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677.
    by B Schneider, Z Morávek, HM Berman
    posted to rotamers rna classification biophysics by marcius to the group SGU-CIPF on 2007-06-12 12:55:21 as ** along with 1 person and 1 group emidio_capriotti BioinfoCIPF
  • Evolutionary rates vary among rRNA structural elements
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354.
    by S Smit, J Widmann, R Knight
    posted to rna evolution by marcius to the group SGU-CIPF on 2007-06-12 12:54:21 as ** along with 5 people and 2 groups eckart_bindewald balicea penka i000 cjeans BioinfoCIPF YY1
  • RNAbor: a web server for RNA structural neighbors.
    Nucleic Acids Res (25 May 2007)
    by Eva Freyhult, Vincent Moulton, Peter Clote
    posted to server sequence-structure secondary_structure rna by marcius to the group SGU-CIPF on 2007-06-04 10:14:23 as ** along with 2 people and 1 group evaf sebastien_vigneau BioinfoCIPF
  • The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
    Nucleic Acids Res (25 May 2007)
    by Sebastien Moretti, Fabrice Armougom, Iain M M Wallace, Desmond G G Higgins, Cornelius V V Jongeneel, Cedric Notredame
    posted to sequence_alignment sequence alignment algorithms by marcius to the group SGU-CIPF on 2007-06-04 10:12:59 as ** along with 2 people and 1 group sebastien_vigneau marti BioinfoCIPF
  • RNA Sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Bioinformatics (30 May 2007)
    by Xing Xu, Yongmei Ji, Gary D D Stormo
    posted to structure_alignment rna by marcius to the group SGU-CIPF on 2007-06-04 10:11:38 as ** along with 1 person and 2 groups cjeans Bioinformatics BioinfoCIPF
  • On the relationship between sequence and structure similarities in proteomics
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 717-723.
    by K Evgeny
    posted to sequence-structure classification bioinformatics by marcius to the group SGU-CIPF on 2007-04-12 10:48:28 as ** along with 1 person and 1 group penka BioinfoCIPF
  • Deleterious SNP prediction: be mindful of your training data!
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 664-672.
    by Care, A Matthew, Needham, J Chris, Bulpitt, J Andrew, Westhead, R David
    posted to snp bioinformatics by marcius to the group SGU-CIPF on 2007-04-12 10:45:50 as ** along with 3 people and 1 group happy_manatee penka Yumyai BioinfoCIPF
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to clustering rna secondary_structure structure_alignment by marcius to the group SGU-CIPF on 2007-03-01 12:29:48 as ** along with 7 people and 1 group eckart_bindewald eweaver ppgardne ilh zwang dunnp zhouyu BioinfoCIPF
  • Key biology databases go wiki
    Nature, Vol. 445, No. 7129. (14 February 2007), pp. 691-691.
    by Jim Giles
    posted to opensourcebiology web20 by marcius to the group SGU-CIPF on 2007-02-15 17:39:08 as ** along with 9 people and 5 groups jyuh eweaver kehan raiyar grahamc leechuck PunkRock barriot mircea biodiversity_conservation Bioinformatics BioinfoCIPF steinmetzlab GrassBase
  • Modeling the Evolution of Protein Domain Architectures Using Maximum Parsimony
    Journal of Molecular Biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315.
    by Jessica H Fong, Lewis Y Geer, Anna R Panchenko, Stephen H Bryant
    posted to protein_domains evolution bioinformatics algorithms by marcius to the group SGU-CIPF on 2007-01-25 08:31:09 as ** along with 5 people and 2 groups icases tny choonpeng redelings zwang BioinfoCIPF TNT
  • Structural proteomics: from the molecule to the system
    Nature Structural & Molecular Biology, Vol. 14, No. 1., pp. 3-4.
    by Lucia Banci, Wolfgang Baumeister, Josefina Enfedaque, Udo Heinemann, Gunter Schneider, Israel Silman, Joel L Sussman
    posted to meeting proteomics review structural_genomics structure views by marcius to the group SGU-CIPF on 2007-01-09 09:39:59 as ** along with 1 person and 1 group gerry BioinfoCIPF
  • A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. e149-e149.
    by J Smith, S Grizot, S Arnould, A Duclert, J Epinat, P Chames, J Prieto, P Redondo, F Blanco, J Bravo, G Montoya, F Paques, P Duchateau
    posted to bioengineering protein_design by marcius to the group SGU-CIPF on 2007-01-03 13:03:20 as ** along with 1 group BioinfoCIPF
  • Sequence comparison by sequence harmony identifies subtype-specific functional sites
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6540-6548.
    by W Pirovano, KA Feenstra, J Heringa
    posted to bioinformatics classification function protein sequence_alignment by marcius to the group SGU-CIPF on 2007-01-03 13:02:03 as ** along with 2 people and 1 group sriram_s marti BioinfoCIPF
  • The interaction networks of structured RNAs
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6587-6604.
    by A Lescoute, E Westhof
    posted to interaction rna secondary_structure by marcius to the group SGU-CIPF on 2007-01-03 13:00:44 as ** along with 6 people and 1 group austin reyez jennifermbui jarasch debatebob ankur_iitg BioinfoCIPF
  • RNAs everywhere: genome-wide annotation of structured RNAs.
    J Exp Zoolog B Mol Dev Evol (14 December 2006)
    by Rolf Backofen, Stephan H H Bernhart, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L Hofacker, Kristin Missal, Axel Mosig, Sonja J J Prohaska, Dominic Rose, Peter F F Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will
    posted to classification review rna by marcius to the group SGU-CIPF on 2007-01-03 12:59:57 as ** along with 11 people and 4 groups jfr bala eckart_bindewald tardigrade andersbj penka cdawson ilh raylim jayster4 maralena microRNA BioinfoCIPF DictyosteliumGroup GIG
  • Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 127-128.
    by Letunic, P Bork
    posted to phylogeny server software by marcius to the group SGU-CIPF on 2007-01-03 12:55:33 as ** along with 4 people and 1 group jyuh skhadar hpaces gjuggler BioinfoCIPF
  • SCOR: a Structural Classification of RNA database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 392-394.
    by PS Klosterman, M Tamura, SR Holbrook, SE Brenner
    posted to databases rna structure by marcius to the group SGU-CIPF on 2006-12-21 14:21:00 as ** along with 1 person and 1 group debatebob BioinfoCIPF
    • Note: You may cite this page as: http://www.citeulike.org/group/1570/order/to_read

    Result page: 1 2 3 4 5 6 7 8 9 10 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.