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Group: SGU-CIPF - with tag genome [30 articles]

Recent papers posted by members of the SGU-CIPF group with tag genome
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
    posted to ncrna genome classification by marcius to the group SGU-CIPF on 2007-06-15 11:16:53 as ** along with 11 people and 3 groups xingxu alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar EisenLab WetBiology BioinfoCIPF
  • The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.
    Science, Vol. 313, No. 5795. (29 September 2006), pp. 1929-1935.
    by J Lamb, ED Crawford, D Peck, JW Modell, IC Blat, MJ Wrobel, J Lerner, JP Brunet, A Subramanian, KN Ross, M Reich, H Hieronymus, G Wei, SA Armstrong, SJ Haggarty, PA Clemons, R Wei, SA Carr, ES Lander, TR Golub
    posted to bioinformatics disease drug genome by marcius to the group SGU-CIPF on 2006-10-04 13:02:14 as ** along with 21 people and 8 groups askrajiv BragilMassoud jyuh kuhn jfr yas balajis lhonigberg neveaire kengg ealloza koller mlovell jdiggans ezra jeremymiller frohike massivemayhem lp2 pablomendes jdiezperezj Biostatistics Computational-Genomics Bioinformatics Neuroscience T_lab BioinfoCIPF GeschwindLab Plantandetc
  • Principles of microRNA regulation of a human cellular signaling network.
    Mol Syst Biol, Vol. 2 (2006)
    by Q Cui, Z Yu, EO Purisima, E Wang
    posted to function genome human microrna by marcius to the group SGU-CIPF on 2006-10-04 12:53:03 as ** along with 7 people and 2 groups bootsy okarsligil jfr tardigrade mtagaya ealloza maralena Bioinformatics BioinfoCIPF
  • Genomics: Blueprints for partnerships
    Nature (17 September 2006)
    by David A Stahl, Seana K Davidson
    posted to genome metagenomics views by marcius to the group SGU-CIPF on 2006-09-18 09:02:21 as ** along with 1 group BioinfoCIPF
  • The gain and loss of genes during 600 million years of vertebrate evolution
    Genome Biology, Vol. 7 (24 May 2006), R43.
    by Tine Blomme, Klaas Vandepoele, Stefanie De Bodt, Cedric Simillion, Steven Maere, Yves Van de Peer
    posted to evolution genome human by marcius to the group SGU-CIPF on 2006-08-23 13:16:00 as ** along with 6 people and 3 groups operon balicea dchughes jhc jryanstevens FMoncini G4ID BioinfoCIPF Genetics-of-Gambling
  • Next station in microarray data analysis: GEPAS.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by D Montaner, J Tárraga, J Huerta-Cepas, J Burguet, JM Vaquerizas, L Conde, P Minguez, J Vera, S Mukherjee, J Valls, MA Pujana, E Alloza, J Herrero, F Al-Shahrour, J Dopazo
    posted to bioinformatics genome microarray servers by marcius to the group SGU-CIPF on 2006-08-23 13:15:19 as ** along with 5 people and 1 group tardigrade rdiaz ealloza schuylrp sgoetz BioinfoCIPF
  • BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by F Al-Shahrour, P Minguez, J Tárraga, D Montaner, E Alloza, JM Vaquerizas, L Conde, C Blaschke, J Vera, J Dopazo
    posted to bioinformatics function genome servers by marcius to the group SGU-CIPF on 2006-08-23 13:14:46 as ** along with 2 people and 1 group ealloza Garamonfok BioinfoCIPF
  • RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse
    Nature, Vol. 441, No. 7092., pp. 469-474.
    by Minoo Rassoulzadegan, Valã©rie Grandjean, Pierre Gounon, Stã©phane Vincent, Isabelle Gillot, Franã§ois Cuzin
    posted to function genome rna by marcius to the group SGU-CIPF on 2006-05-24 21:30:32 as ** along with 6 people and 8 groups dchughes mtagaya cmm neveaire klal epigenetics Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID BioinfoCIPF Genetics-of-Gambling
  • A distal enhancer and an ultraconserved exon are derived from a novel retroposon
    Nature (16 April 2006)
    by Gill Bejerano, Craig B Lowe, Nadav Ahituv, Bryan King, Adam Siepel, Sofie R Salama, Edward M Rubin, James W Kent, David Haussler
    posted to bioinformatics evolution gene_expression genome by marcius to the group SGU-CIPF on 2006-05-09 00:21:57 as ** along with 5 people and 5 groups dchughes nickluscombe djkt cisevol gjuggler G4ID EBI-regulation BioinfoCIPF Genetics-of-Gambling cis-regulatory-evolution
  • Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.
    PLoS Comput Biol, Vol. 2, No. 4. (21 April 2006)
    by Jakob Skou S Pedersen, Gill Bejerano, Adam Siepel, Kate Rosenbloom, Kerstin Lindblad-Toh, Eric S S Lander, Jim Kent, Webb Miller, David Haussler
    posted to bioinformatics genome rna secondary_structure by marcius to the group SGU-CIPF on 2006-04-24 19:45:10 as ** along with 11 people and 1 group hpaces eckart_bindewald tardigrade arcticrasta tabu mtagaya Eonwe ilh djkt raylim tale BioinfoCIPF
  • The Functional Genomics of Noncoding RNA
    Science, Vol. 309, No. 5740. (02 September 2005), pp. 1527-1528.
    by John S Mattick
    posted to function genome ncrna review by marcius to the group SGU-CIPF on 2006-04-11 20:04:42 as ** along with 10 people and 7 groups biozhang2001 lyongu alexg eckart_bindewald dchughes mtagaya cmm neveaire bsmagic jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab BioinfoCIPF bioinplant
  • Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space
    Nucleic Acids Research, Vol. 34, No. 3. (2006), pp. 1066-1080.
    by Russell L Marsden, David Lee, Michael Maibaum, Corin Yeats, Christine A Orengo
    posted to bioinformatics evolution genome protein_domains structural_genomics by marcius to the group SGU-CIPF on 2006-03-15 23:00:52 as ** along with 1 person and 1 group eweaver BioinfoCIPF
  • A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans.
    Curr Biol (1 February 2006)
    by Sabbi Lall, Dominic Grün, Azra Krek, Kevin Chen, Yi-Lu L Wang, Colin N N Dewey, Pranidhi Sood, Teresa Colombo, Nicolas Bray, Philip Macmenamin, Huey-Ling L Kao, Kristin C C Gunsalus, Lior Pachter, Fabio Piano, Nikolaus Rajewsky
    posted to genome ncrna by marcius to the group SGU-CIPF on 2006-03-09 22:57:06 as ** along with 2 people and 2 groups andersbj mtagaya microRNA BioinfoCIPF
  • A computational approach to identify genes for functional RNAs in genomic sequences
    Nucl. Acids Res., Vol. 29, No. 19. (1 October 2001), pp. 3928-3938.
    by Richard J Carter, Inna Dubchak, Stephen R Holbrook
    posted to bioinformatics genome ncrna by marcius to the group SGU-CIPF on 2006-03-09 22:56:37 as ** along with 3 people and 1 group kallberg arcticrasta mtagaya BioinfoCIPF
  • Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.
    Genome Res (6 March 2006)
    by Dmitry B B Malko, Vsevolod J J Makeev, Andrey A A Mironov, Mikhail S S Gelfand
    posted to evolution genome by marcius to the group SGU-CIPF on 2006-03-09 22:56:10 as ** along with 4 people and 3 groups eoghanharr indigoviolet penka stajich EisenLab Nie BioinfoCIPF
  • Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs.
    Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 6057-6069.
    by U Laserson, HH Gan, T Schlick
    posted to computational_biology function genome ncrna rna by marcius to the group SGU-CIPF on 2006-03-06 22:49:02 as ** along with 1 group BioinfoCIPF
  • Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression.
    Genome Res, Vol. 16, No. 1. (January 2006), pp. 20-29.
    by W Deng, X Zhu, G Skogerbø, Y Zhao, Z Fu, Y Wang, H He, L Cai, H Sun, C Liu, B Li, B Bai, J Wang, D Jia, S Sun, H He, Y Cui, Y Wang, D Bu, R Chen
    posted to genome ncrna by marcius to the group SGU-CIPF on 2006-03-02 03:21:08 as ** along with 2 people and 3 groups imouthesmp bsmagic Bioinformatics BioinfoCIPF bioinplant
  • The colorectal microRNAome.
    Proc Natl Acad Sci U S A (27 February 2006)
    by Jordan M M Cummins, Yiping He, Rebecca J J Leary, Ray Pagliarini, Luis A A Diaz, Tobias Sjoblom, Omer Barad, Zvi Bentwich, Anna E E Szafranska, Emmanuel Labourier, Christopher K K Raymond, Brian S S Roberts, Hartmut Juhl, Kenneth W W Kinzler, Bert Vogelstein, Victor E E Velculescu
    posted to experimental genome microrna by marcius to the group SGU-CIPF on 2006-03-02 01:05:50 as ** along with 6 people and 2 groups jyuh jfr eckart_bindewald andersbj mtagaya cpnP microRNA BioinfoCIPF
  • Elucidation of the Small RNA Component of the Transcriptome
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1567-1569.
    by Cheng Lu, Shivakundan S Tej, Shujun Luo, Christian D Haudenschild, Blake C Meyers, Pamela J Green
    posted to genome ncrna rna by marcius to the group SGU-CIPF on 2006-02-27 23:54:14 as ** along with 4 people and 3 groups imouthesmp mortenlindow cdawson plofje microRNA BioinfoCIPF GIG
  • THE DRUGGABLE GENOME
    Nat Rev Drug Discov, Vol. 1, No. 9. (2002), pp. 727-730.
    by Andrew L Hopkins, Colin R Groom
    posted to drug genome review by marcius to the group SGU-CIPF on 2006-02-16 17:31:21 as ** along with 5 people and 1 group Yanno andreasauerwein Nambi happy_manatee ramensky BioinfoCIPF
  • The druggable genome: an update.
    Drug Discov Today, Vol. 10, No. 23-24. (December 2005), pp. 1607-1610.
    by AP Russ, S Lampel
    posted to drug genome review by marcius to the group SGU-CIPF on 2006-02-16 17:30:18 as ** along with 4 people and 2 groups Yanno kuhn eweaver caporaso biomedical-nlp BioinfoCIPF
  • Computational identification of noncoding RNAs in E. coli by comparative genomics.
    Curr Biol, Vol. 11, No. 17. (4 September 2001), pp. 1369-1373.
    by E Rivas, RJ Klein, TA Jones, SR Eddy
    posted to computational_biology genes genome rna by marcius to the group SGU-CIPF on 2006-02-10 20:26:44 as ** along with 5 people and 3 groups evaf eckart_bindewald arcticrasta dquest bsmagic Bioinformatics BioinfoCIPF bioinplant
  • PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks
    Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 248-250.
    by Anais Baudot, David Martin, Alain Guenoche, Bernard Jacq, Christine Brun
    posted to bioinformatics genome protein_function protein_interactions by marcius to the group SGU-CIPF on 2006-02-02 05:50:04 as ** along with 2 people and 1 group eweaver maralena BioinfoCIPF
  • Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage
    Science, Vol. 309, No. 5736. (05 August 2005), pp. 938-940.
    by Jan Ihmels, Sven Bergmann, Maryam Gerami-Nejad, Itai Yanai, Mark Mcclellan, Judith Berman, Naama Barkai
    posted to evolution gene_expression genes genome by marcius to the group SGU-CIPF on 2006-02-02 00:41:46 as ** along with 7 people and 2 groups aalibes monod arve adepace entropy janek04 emptyhb EisenLab BioinfoCIPF
  • Computational verification of protein-protein interactions by orthologous co-expression.
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by I Tirosh, N Barkai
    posted to evolution gene_expression genes genome by marcius to the group SGU-CIPF on 2006-02-02 00:41:31 as ** along with 2 people and 1 group conkymacro bluto BioinfoCIPF
  • Defining transcription modules using large-scale gene expression data.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 1993-2003.
    by J Ihmels, S Bergmann, N Barkai
    posted to evolution gene_expression genes genome by marcius to the group SGU-CIPF on 2006-02-02 00:41:19 as ** along with 3 people and 2 groups tvdbulck adepace natstreet EisenLab BioinfoCIPF
  • Similarities and differences in genome-wide expression data of six organisms.
    PLoS Biol, Vol. 2, No. 1. (January 2004)
    by S Bergmann, J Ihmels, N Barkai
    posted to evolution gene_expression genes genome by marcius to the group SGU-CIPF on 2006-02-02 00:41:05 as ** along with 5 people and 1 group jeremymiller dragonrez Ayest RMGraze koller BioinfoCIPF
  • Genome-scale evidence of the nematode-arthropod clade.
    Genome Biol, Vol. 6, No. 5. (2005)
    by H Dopazo, J Dopazo
    posted to bioinformatics evolution genome by marcius to the group SGU-CIPF on 2006-01-17 19:11:25 as ** along with 2 people and 1 group hdopazo Garamonfok BioinfoCIPF
  • BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by F Al-Shahrour, P Minguez, JM Vaquerizas, L Conde, J Dopazo
    posted to bioinformatics genes genome servers by marcius to the group SGU-CIPF on 2006-01-17 19:11:05 as ** along with 4 people and 1 group sgoetz RMGraze eweaver Garamonfok BioinfoCIPF
  • The genome sequence of the malaria mosquito Anopheles gambiae.
    Science, Vol. 298, No. 5591. (4 October 2002), pp. 129-149.
    by RA Holt, GM Subramanian, A Halpern, GG Sutton, R Charlab, DR Nusskern, P Wincker, AG Clark, JM Ribeiro, R Wides, SL Salzberg, B Loftus, M Yandell, WH Majoros, DB Rusch, Z Lai, CL Kraft, JF Abril, V Anthouard, P Arensburger, PW Atkinson, H Baden, V de Berardinis, D Baldwin, V Benes, J Biedler, C Blass, R Bolanos, D Boscus, M Barnstead, S Cai, A Center, K Chaturverdi, GK Christophides, MA Chrystal, M Clamp, A Cravchik, V Curwen, A Dana, A Delcher, I Dew, CA Evans, M Flanigan, A Grundschober-Freimoser, L Friedli, Z Gu, P Guan, R Guigo, ME Hillenmeyer, SL Hladun, JR Hogan, YS Hong, J Hoover, O Jaillon, Z Ke, C Kodira, E Kokoza, A Koutsos, I Letunic, A Levitsky, Y Liang, JJ Lin, NF Lobo, JR Lopez, JA Malek, TC McIntosh, S Meister, J Miller, C Mobarry, E Mongin, SD Murphy, DA O'Brochta, C Pfannkoch, R Qi, MA Regier, K Remington, H Shao, MV Sharakhova, CD Sitter, J Shetty, TJ Smith, R Strong, J Sun, D Thomasova, LQ Ton, P Topalis, Z Tu, MF Unger, B Walenz, A Wang, J Wang, M Wang, X Wang, KJ Woodford, JR Wortman, M Wu, A Yao, EM Zdobnov, H Zhang, Q Zhao, S Zhao, SC Zhu, I Zhimulev, M Coluzzi, A della Torre, CW Roth, C Louis, F Kalush, RJ Mural, EW Myers, MD Adams, HO Smith, S Broder, MJ Gardner, CM Fraser, E Birney, P Bork, PT Brey, JC Venter, J Weissenbach, FC Kafatos, FH Collins, SL Hoffman
    posted to dna genome sequence by marcius to the group SGU-CIPF on 2005-10-23 09:50:49 as ** along with 7 people and 3 groups Neeperando sdinka jwortman jmeppley meister1975 stajich niallhaslam Notre Dame Bioinformatics BioinfoCIPF Berkeley Mycology
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