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Group: SGU-CIPF - with tag ncrna [35 articles]

Recent papers posted by members of the SGU-CIPF group with tag ncrna
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
    posted to ncrna genome classification by marcius to the group SGU-CIPF on 2007-06-15 11:16:53 as ** along with 11 people and 3 groups xingxu alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd elfar EisenLab WetBiology BioinfoCIPF
  • RNA silencing
    Trends in Biochemical Sciences, Vol. 30, No. 6. (June 2005), pp. 290-293.
    by David Baulcombe
    posted to ncrna review by marcius to the group SGU-CIPF on 2006-08-23 13:30:40 as ** along with 2 people and 2 groups tardigrade cdawson BioinfoCIPF GIG
  • Noncoding RNAs and homeodomains get together
    Nature Structural & Molecular Biology, Vol. 13, No. 7., pp. 574-574.
    by Sabbi Lall
    posted to evolution ncrna by marcius to the group SGU-CIPF on 2006-07-26 15:34:33 as ** along with 1 person and 1 group tardigrade BioinfoCIPF
  • GENE REGULATION BY RIBOSWITCHES
    Nat Rev Mol Cell Biol, Vol. 5, No. 6. (June 2004), pp. 451-463.
    by Maumita Mandal, Ronald R Breaker
    posted to function genes ncrna review by marcius to the group SGU-CIPF on 2006-07-26 14:37:39 as ** along with 1 person and 1 group dayjm BioinfoCIPF
  • Noncoding RNA genes.
    Curr Opin Genet Dev, Vol. 9, No. 6. (December 1999), pp. 695-699.
    by SR Eddy
    posted to ncrna review by marcius to the group SGU-CIPF on 2006-05-19 18:29:54 as ** along with 5 people and 2 groups evaf arcticrasta mtagaya cmm blobbybirdman FAB-lab BioinfoCIPF
  • Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change.
    BMC Bioinformatics, Vol. 7, No. 1. (27 March 2006)
    by Andrew V Uzilov, Joshua M Keegan, David H Mathews
    posted to biophysics ncrna secondary_structure by marcius to the group SGU-CIPF on 2006-05-18 00:17:28 as ** along with 2 people and 1 group alexg eckart_bindewald BioinfoCIPF
  • Non-coding RNA.
    Hum Mol Genet, Vol. 15, No. suppl_1. (15 April 2006)
    by John S S Mattick, Igor V V Makunin
    posted to ncrna review by marcius to the group SGU-CIPF on 2006-05-03 23:29:02 as ** along with 10 people and 6 groups bertelsen tuck eckart_bindewald tardigrade andersbj dchughes mtagaya scroft bsmagic cabbagezs Bioinformatics microRNA G4ID BioinfoCIPF bioinplant Genetics-of-Gambling
  • Topology of pseudoknotted homopolymers.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 73, No. 3 Pt 1. (March 2006)
    by G Vernizzi, P Ribeca, H Orland, A Zee
    posted to folding ncrna rna by marcius to the group SGU-CIPF on 2006-04-18 00:18:42 as ** along with 1 group BioinfoCIPF
  • RNA editing of human microRNAs.
    Genome Biol, Vol. 7, No. 4. (4 April 2006)
    by Matthew J Blow, Russell J Grocock, Stijn van Dongen, Anton J Enright, Ed Dicks, P Andrew A Futreal, Richard Wooster, Michael R Stratton
    posted to microrna ncrna by marcius to the group SGU-CIPF on 2006-04-17 04:34:43 as ** along with 3 people and 2 groups eckart_bindewald andersbj scroft microRNA BioinfoCIPF
  • The Functional Genomics of Noncoding RNA
    Science, Vol. 309, No. 5740. (02 September 2005), pp. 1527-1528.
    by John S Mattick
    posted to function genome ncrna review by marcius to the group SGU-CIPF on 2006-04-11 20:04:42 as ** along with 10 people and 7 groups biozhang2001 lyongu alexg eckart_bindewald dchughes mtagaya cmm neveaire bsmagic jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab BioinfoCIPF bioinplant
  • Identification of hundreds of conserved and nonconserved human microRNAs
    Nature Genetics, Vol. 37, No. 7. (19 June 2005), pp. 766-770.
    by Isaac Bentwich, Amir Avniel, Yael Karov, Ranit Aharonov, Shlomit Gilad, Omer Barad, Adi Barzilai, Paz Einat, Uri Einav, Eti Meiri, Eilon Sharon, Yael Spector, Zvi Bentwich
    posted to evolution microrna ncrna rna by marcius to the group SGU-CIPF on 2006-03-13 07:22:07 as ** along with 2 people and 1 group jfr mtagaya BioinfoCIPF
  • A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans.
    Curr Biol (1 February 2006)
    by Sabbi Lall, Dominic Grün, Azra Krek, Kevin Chen, Yi-Lu L Wang, Colin N N Dewey, Pranidhi Sood, Teresa Colombo, Nicolas Bray, Philip Macmenamin, Huey-Ling L Kao, Kristin C C Gunsalus, Lior Pachter, Fabio Piano, Nikolaus Rajewsky
    posted to genome ncrna by marcius to the group SGU-CIPF on 2006-03-09 22:57:06 as ** along with 2 people and 2 groups andersbj mtagaya microRNA BioinfoCIPF
  • A computational approach to identify genes for functional RNAs in genomic sequences
    Nucl. Acids Res., Vol. 29, No. 19. (1 October 2001), pp. 3928-3938.
    by Richard J Carter, Inna Dubchak, Stephen R Holbrook
    posted to bioinformatics genome ncrna by marcius to the group SGU-CIPF on 2006-03-09 22:56:37 as ** along with 3 people and 1 group kallberg arcticrasta mtagaya BioinfoCIPF
  • The path from the RNA world.
    J Mol Evol, Vol. 46, No. 1. (January 1998), pp. 1-17.
    by AM Poole, DC Jeffares, D Penny
    posted to evolution ncrna rna by marcius to the group SGU-CIPF on 2006-03-08 17:28:19 as ** along with 1 person and 1 group arcticrasta BioinfoCIPF
  • Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs.
    Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 6057-6069.
    by U Laserson, HH Gan, T Schlick
    posted to computational_biology function genome ncrna rna by marcius to the group SGU-CIPF on 2006-03-06 22:49:02 as ** along with 1 group BioinfoCIPF
  • Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes
    Nature Biotechnology, Vol. 23, No. 11. (23 October 2005), pp. 1424-1433.
    by Robert Penchovsky, Ronald R Breaker
    posted to computational_biology ncrna by marcius to the group SGU-CIPF on 2006-03-06 22:33:55 as ** along with 2 people and 1 group rklancer dbikard BioinfoCIPF
  • Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
    Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 1-5.
    by Ken C Pang, Martin C Frith, John S Mattick
    posted to evolution ncrna by marcius to the group SGU-CIPF on 2006-03-03 20:39:51 as ** along with 6 people and 4 groups cassj alexg eckart_bindewald andersbj dchughes mtagaya microRNA G4ID BioinfoCIPF Genetics-of-Gambling
  • RNA Silencing Systems and Their Relevance to Plant Development.
    Annu Rev Cell Dev Biol (28 June 2005)
    by Frederick Meins Jr, Azeddine Si-Ammour, Todd Blevins
    posted to ncrna review rna by marcius to the group SGU-CIPF on 2006-03-02 03:46:26 as ** along with 1 group BioinfoCIPF
  • Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression.
    Genome Res, Vol. 16, No. 1. (January 2006), pp. 20-29.
    by W Deng, X Zhu, G Skogerbø, Y Zhao, Z Fu, Y Wang, H He, L Cai, H Sun, C Liu, B Li, B Bai, J Wang, D Jia, S Sun, H He, Y Cui, Y Wang, D Bu, R Chen
    posted to genome ncrna by marcius to the group SGU-CIPF on 2006-03-02 03:21:08 as ** along with 2 people and 3 groups imouthesmp bsmagic Bioinformatics BioinfoCIPF bioinplant
  • Gene regulation by microRNAs.
    Curr Opin Genet Dev (23 February 2006)
    by Richard W W Carthew
    posted to ncrna review rna by marcius to the group SGU-CIPF on 2006-03-02 01:04:55 as ** along with 9 people and 3 groups eckart_bindewald tardigrade rodrigo dchughes mtagaya balabu cdawson noano heliopais microRNA BioinfoCIPF GIG
  • Experimental approaches to identify non-coding RNAs.
    Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 635-646.
    by A Hüttenhofer, J Vogel
    posted to biology experimental ncrna rna by marcius to the group SGU-CIPF on 2006-03-02 01:04:24 as ** along with 7 people and 6 groups eweaver perrywoo dchughes tabu mtagaya cdawson bsmagic Bioinformatics G4ID BioinfoCIPF bioinplant GIG Genetics-of-Gambling
  • Beyond the proteome: non-coding regulatory RNAs.
    Genome Biol, Vol. 3, No. 5. (2002)
    by M Szymański, J Barciszewski
    posted to ncrna review rna by marcius to the group SGU-CIPF on 2006-03-02 01:03:48 as ** along with 2 people and 2 groups eweaver cdawson BioinfoCIPF GIG
  • Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.
    BMC Bioinformatics, Vol. 6 (2005)
    by C Xue, F Li, T He, GP Liu, Y Li, X Zhang
    posted to bioinformatics classification microrna ncrna rna sequence-structure by marcius to the group SGU-CIPF on 2006-03-02 00:37:24 as ** along with 1 person and 1 group mtagaya BioinfoCIPF
  • Identification of plant microRNA homologs
    Bioinformatics, Vol. 22, No. 3. (1 February 2006), pp. 359-360.
    by Tobias Dezulian, Michael Remmert, Javier F Palatnik, Detlef Weigel, Daniel H Huson
    posted to bioinformatics microrna ncrna rna by marcius to the group SGU-CIPF on 2006-02-28 08:46:34 as ** along with 5 people and 3 groups imouthesmp mortenlindow andersbj cdawson natstreet microRNA BioinfoCIPF GIG
  • It's a Small RNA World, After All
    Science, Vol. 309, No. 5740. (02 September 2005), pp. 1525-1526.
    by Matthew W Vaughn, Rob Martienssen
    posted to ncrna news review views by marcius to the group SGU-CIPF on 2006-02-27 23:57:54 as ** along with 2 people and 1 group dayjm eweaver BioinfoCIPF
  • Micros for microbes: non-coding regulatory RNAs in bacteria.
    Trends Genet, Vol. 21, No. 7. (July 2005), pp. 399-404.
    by S Gottesman
    posted to ncrna review rna by marcius to the group SGU-CIPF on 2006-02-27 23:54:44 as ** along with 8 people and 2 groups imouthesmp sglandt balabu cdawson comb leemary4 saru ricardolds BioinfoCIPF GIG
  • Elucidation of the Small RNA Component of the Transcriptome
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1567-1569.
    by Cheng Lu, Shivakundan S Tej, Shujun Luo, Christian D Haudenschild, Blake C Meyers, Pamela J Green
    posted to genome ncrna rna by marcius to the group SGU-CIPF on 2006-02-27 23:54:14 as ** along with 4 people and 3 groups imouthesmp mortenlindow cdawson plofje microRNA BioinfoCIPF GIG
  • MicroRNAs: genomics, biogenesis, mechanism, and function.
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 281-297.
    by DP Bartel
    posted to microrna ncrna review by marcius to the group SGU-CIPF on 2006-02-27 23:19:21 as ** along with 4 people and 3 groups miguel maryee mtagaya shizhao Wikipedia Bioinformatics BioinfoCIPF
  • New catalytic structures from an existing ribozyme
    Nature Structural & Molecular Biology, Vol. 12, No. 11. (09 October 2005), pp. 994-1000.
    by Edward A Curtis, David P Bartel
    posted to function ncrna ribozyme rna by marcius to the group SGU-CIPF on 2006-02-27 23:17:12 as ** along with 1 person and 2 groups condon beta BioinfoCIPF
  • The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution.
    Science (24 November 2005)
    by Kyle Kai-How K Farh, Andrew Grimson, Calvin Jan, Benjamin P P Lewis, Wendy K K Johnston, Lee P P Lim, Christopher B B Burge, David P P Bartel
    posted to evolution ncrna rna by marcius to the group SGU-CIPF on 2006-02-27 23:14:18 as ** along with 12 people and 3 groups jerlich mfenner aprasad dayjm eckart_bindewald dpollard mortenlindow mtagaya noano lp2 heliopais Alexander_Kanitz EisenLab microRNA BioinfoCIPF
  • MicroRNAs and Their Regulatory Roles in Plants.
    Annu Rev Plant Biol (30 January 2006)
    by Matthew W W Jones-Rhoades, David P P Bartel, Bonnie Bartel
    posted to ncrna review rna by marcius to the group SGU-CIPF on 2006-02-27 23:13:25 as ** along with 5 people and 3 groups natstreet tardigrade andersbj cdawson plofje microRNA BioinfoCIPF GIG
  • RNA REGULATION: A NEW GENETICS?
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 316-323.
    by John S Mattick
    posted to ncrna review rna by marcius to the group SGU-CIPF on 2006-02-13 20:27:00 as ** along with 1 person and 1 group arcticrasta BioinfoCIPF
  • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.
    Cell, Vol. 120, No. 1. (14 January 2005), pp. 15-20.
    by BP Lewis, CB Burge, DP Bartel
    posted to bioinformatics computational_biology microrna ncrna by marcius to the group SGU-CIPF on 2006-02-13 20:24:00 as ** along with 9 people and 2 groups elfar maryee eckart_bindewald tardigrade mortenlindow andersbj mtagaya heliopais Alexander_Kanitz microRNA BioinfoCIPF
  • Structural Basis for Double-Stranded RNA Processing by Dicer
    Science, Vol. 311, No. 5758. (13 January 2006), pp. 195-198.
    by Ian J Macrae, Kaihong Zhou, Fei Li, Adrian Repic, Angela N Brooks, Zacheus W Cande, Paul D Adams, Jennifer A Doudna
    posted to ncrna rna structure by marcius to the group SGU-CIPF on 2006-01-28 18:38:47 as ** along with 4 people and 1 group shuns dayjm mtagaya yavanna BioinfoCIPF
  • Sequence-based heuristics for faster annotation of non-coding RNA families
    Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 35-39.
    by Zasha Weinberg, Walter L Ruzzo
    posted to bioinformatics classification clustering ncrna by marcius to the group SGU-CIPF on 2006-01-12 19:05:33 as ** along with 1 group BioinfoCIPF
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