Group: SGU-CIPF - with tag rna [at least 200 articles] Export Sort

Recent papers posted by members of the SGU-CIPF group with tag rna

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	Automated de novo prediction of native-like RNA tertiary structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 37. (11 September 2007), pp. 14664-14669. by Rhiju Das, David Baker posted to structure_prediction rna ab-initio by marcius to the group SGU-CIPF on 2007-09-01 10:46:02 as along with 8 people and 1 group fisherp rsaito jwm eckart_bindewald zwang physics Ema reyez BioinfoCIPF
	RNA structure: experimental analysis. [My Copy] Curr Opin Microbiol (24 May 2007) by Brice Felden posted to structure rna review experimental by marcius to the group SGU-CIPF on 2007-06-12 12:56:46 as along with 4 people and 1 group svozil penka emidio_capriotti debatebob BioinfoCIPF
	RNA conformational classes. [My Copy] Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677. by B. Schneider, Z. Morávek, H. M. Berman posted to rotamers rna classification biophysics by marcius to the group SGU-CIPF on 2007-06-12 12:55:21 as along with 2 people and 1 group svozil emidio_capriotti BioinfoCIPF
	Evolutionary rates vary among rRNA structural elements [My Copy] Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354. by S. Smit, J. Widmann, R. Knight posted to rna evolution by marcius to the group SGU-CIPF on 2007-06-12 12:54:21 as along with 6 people and 1 group mhamada eckart_bindewald balicea penka i000 cjeans BioinfoCIPF
	RNAbor: a web server for RNA structural neighbors. [My Copy] Nucleic Acids Res (25 May 2007) by Eva Freyhult, Vincent Moulton, Peter Clote posted to server sequence-structure secondary_structure rna by marcius to the group SGU-CIPF on 2007-06-04 10:14:23 as along with 2 people and 1 group sebastien_vigneau evaf BioinfoCIPF
	RNA Sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment [My Copy] Bioinformatics (30 May 2007), btm272. by Xing Xu, Yongmei Ji, Gary D. Stormo posted to structure_alignment rna by marcius to the group SGU-CIPF on 2007-06-04 10:11:38 as along with 3 people and 2 groups parnell zanexu cjeans Bioinformatics BioinfoCIPF
	Multiple structural alignment and clustering of RNA sequences [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 926-932. by Elfar Torarinsson, Jakob H. Havgaard, Jan Gorodkin posted to clustering rna secondary_structure structure_alignment by marcius to the group SGU-CIPF on 2007-03-01 12:29:48 as along with 11 people and 1 group parnell rb_india zanexu Md_2007 eckart_bindewald eweaver ppgardne ilh zwang dunnp zhouyu BioinfoCIPF
	The interaction networks of structured RNAs [My Copy] Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6587-6604. by A. Lescoute, E. Westhof posted to interaction rna secondary_structure by marcius to the group SGU-CIPF on 2007-01-03 13:00:44 as along with 7 people and 1 group jec105 jarasch debatebob ankur_iitg jennifermbui reyez austin BioinfoCIPF
	RNAs everywhere: genome-wide annotation of structured RNAs. [My Copy] J Exp Zoolog B Mol Dev Evol (14 December 2006) by Rolf Backofen, Stephan H H. Bernhart, Christoph Flamm, et al.Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L. Hofacker, Kristin Missal, Axel Mosig, Sonja J J. Prohaska, Dominic Rose, Peter F F. Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will posted to classification review rna by marcius to the group SGU-CIPF on 2007-01-03 12:59:57 as along with 12 people and 4 groups NicholasErho jfr bala eckart_bindewald tardigrade andersbj penka cdawson ilh raylim jayster4 maralena microRNA BioinfoCIPF DictyosteliumGroup GIG
	SCOR: a Structural Classification of RNA database. [My Copy] Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 392-394. by P. S. Klosterman, M. Tamura, S. R. Holbrook, S. E. Brenner posted to databases rna structure by marcius to the group SGU-CIPF on 2006-12-21 14:21:00 as along with 2 people and 1 group dgront debatebob BioinfoCIPF
	RNA structure: the long and the short of it. [My Copy] Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 302-308. by S. R. Holbrook posted to review rna structure by marcius to the group SGU-CIPF on 2006-11-29 12:55:28 as along with 3 people and 1 group jec105 eckart_bindewald debatebob BioinfoCIPF
	An RNA folding algorithm including pseudoknots based on dynamic weighted matching. [My Copy] Comput Biol Chem, Vol. 30, No. 1. (February 2006), pp. 72-76. by H. Liu, D. Xu, J. Shao, Y. Wang posted to algorithms rna secondary_structure by marcius to the group SGU-CIPF on 2006-11-16 17:44:25 as along with 1 person and 1 group eckart_bindewald BioinfoCIPF
	ProteinRNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2746-2752. by N. Morozova, J. Allers, Y. Shamoo posted to bioinformatics protein_interactions rna algorithms by marcius to the group SGU-CIPF on 2006-11-16 09:29:09 as along with 1 group BioinfoCIPF
	Mining frequent stem patterns from unaligned RNA sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 20. (15 October 2006), pp. 2480-2487. by M. Hamada, K. Tsuda, T. Kudo, T. Kin, K. Asai posted to bioinformatics rna secondary_structure by marcius to the group SGU-CIPF on 2006-11-01 14:13:15 as along with 6 people and 2 groups timhubbard tardigrade andersbj samal dquest plofje microRNA BioinfoCIPF
	Three-dimensional comparative modeling of RNA. [My Copy] Nucleic Acids Symp Ser, No. 36. (1997), pp. 69-71. by C. Zwieb, F. Müller posted to algorithms bioinformatics comparative_modeling rna by marcius to the group SGU-CIPF on 2006-10-27 21:31:25 as along with 1 group BioinfoCIPF
	RNA structures and folding: from conventional to new issues in structure predictions. [My Copy] Curr Opin Struct Biol, Vol. 7, No. 2. (April 1997), pp. 229-235. by P. Schuster, P. F. Stadler, A. Renner posted to prediction review rna structure by marcius to the group SGU-CIPF on 2006-10-23 17:16:19 as along with 1 person and 1 group emidio_capriotti BioinfoCIPF
	NMR spectroscopy of RNA. [My Copy] Chembiochem, Vol. 4, No. 10. (6 October 2003), pp. 936-962. by B. Fürtig, C. Richter, J. Wöhnert, H. Schwalbe posted to nmr review rna by marcius to the group SGU-CIPF on 2006-10-22 12:10:22 as along with 1 person and 1 group bmduggan BioinfoCIPF
	A multi-model approach to nucleic acid-based drug development. [My Copy] BioDrugs, Vol. 18, No. 1. (2004), pp. 37-50. by I. Gautherot, R. Sodoyer posted to discovery drug nmr rna by marcius to the group SGU-CIPF on 2006-10-22 12:09:02 as along with 1 group BioinfoCIPF
	Structural basis for messenger RNA movement on the ribosome. [My Copy] Nature, Vol. 444, No. 7117. (16 November 2006), pp. 391-394. by G. Yusupova, L. Jenner, B. Rees, D. Moras, M. Yusupov posted to ribosome rna structure by marcius to the group SGU-CIPF on 2006-10-20 14:25:18 as along with 3 people and 1 group kirasato ivankel braingrind BioinfoCIPF
	The equilibrium partition function and base pair binding probabilities for RNA secondary structure. [My Copy] Biopolymers, Vol. 29, No. 6-7. (n 1990), pp. 1105-1119. by J. S. McCaskill posted to algorithms biophysics rna secondary_structure by marcius to the group SGU-CIPF on 2006-10-20 14:24:37 as along with 9 people and 2 groups NicholasErho saunders rb_india ellarond evaf arcticrasta condon Hosna Kiarostami beta BioinfoCIPF
	Mining frequent stem patterns from unaligned RNA sequences [My Copy] Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2480-2487. by Hamada, Michiaki, Tsuda, et al. Koji, Kudo, Taku, Kin, Taishin, Asai, Kiyoshi posted to algorithms alignment bioinformatics rna by marcius to the group SGU-CIPF on 2006-10-20 13:20:33 as along with 1 group BioinfoCIPF
	RNA world - the dark matter of evolutionary genomics [My Copy] Journal of Evolutionary Biology, Vol. 19, No. 6. (2006), pp. 1768-1774. by P. Michalak posted to biology evolution rna views by marcius to the group SGU-CIPF on 2006-10-20 13:19:24 as along with 7 people and 4 groups GustavoLacerda dayjm dchughes cdawson rabu chenlc03 stajich G4ID BioinfoCIPF GIG Genetics-of-Gambling
	Modulating the outer membrane with small RNAs [My Copy] Genes Dev., Vol. 20, No. 17. (1 September 2006), pp. 2338-2348. by Maude Guillier, Susan Gottesman, Gisela Storz posted to bioengineering membrane rna by marcius to the group SGU-CIPF on 2006-10-20 13:18:20 as along with 1 person and 2 groups bala BioinfoCIPF DictyosteliumGroup
	Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures. [My Copy] Bioinformatics (11 September 2006) by N Morozova, J Allers, J Myers, Y Shamoo posted to interaction protein rna by marcius to the group SGU-CIPF on 2006-09-15 08:51:28 as along with 7 people and 2 groups balewis svozil semin yoonk kaarsinogen eckart_bindewald medic0747 Bioinformatics BioinfoCIPF
	Application of the RNA structure classification system, CSNA, to NMR structure determination. [My Copy] Nucleic Acids Res Suppl, No. 3. (2003), pp. 127-128. by S. Baba, A. Takasu, K. Watanabe, G. Kawai posted to classification ontology rna structure by marcius to the group SGU-CIPF on 2006-09-13 15:19:00 as along with 1 person and 1 group eckart_bindewald BioinfoCIPF
	Computational methods for RNA structure determination. [My Copy] Curr Opin Struct Biol, Vol. 11, No. 3. (June 2001), pp. 282-286. by F. Major, R. Griffey posted to algorithms bioinformatics review rna structure by marcius to the group SGU-CIPF on 2006-09-13 15:18:38 as along with 3 people and 1 group lillekatt P2324548 eckart_bindewald BioinfoCIPF
	How do RNA folding algorithms work? [My Copy] Nature Biotechnology In Nat Biotech, Vol. 22, No. 11. (01 November 2004), pp. 1457-1458. by Sean R. Eddy posted to algorithms bioinformatics biophysics folding review rna by marcius to the group SGU-CIPF on 2006-09-08 11:14:16 as along with 14 people and 1 group guhjy heliopais mjoach ellarond evaf tardigrade mtagaya 3times3 cthachuk magnolia maralena guxiyou cambray austin BioinfoCIPF
	Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (04 September 2006), 400. by Robin Dowell, Sean Eddy posted to algorithms alignment bioinformatics prediction rna structure by marcius to the group SGU-CIPF on 2006-09-07 22:04:11 as along with 7 people and 1 group parnell nuin rb_india eckart_bindewald dquest ilh reyez BioinfoCIPF
	SCOR: Structural Classification of RNA, version 2.0. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by M. Tamura, D. K. Hendrix, P. S. Klosterman, N. R. Schimmelman, S. E. Brenner, S. R. Holbrook posted to databases rna structure by marcius to the group SGU-CIPF on 2006-09-07 17:42:13 as along with 4 people and 2 groups rb_india condon debatebob reyez beta BioinfoCIPF
	MeRNA: a database of metal ion binding sites in RNA structures. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by L. R. Stefan, R. Zhang, A. G. Levitan, D. K. Hendrix, S. E. Brenner, S. R. Holbrook posted to databases rna structure by marcius to the group SGU-CIPF on 2006-09-07 17:41:37 as along with 1 group BioinfoCIPF
	RNA structural motifs: building blocks of a modular biomolecule. [My Copy] Q Rev Biophys, Vol. 38, No. 3. (August 2005), pp. 221-243. by D. K. Hendrix, S. E. Brenner, S. R. Holbrook posted to motif rna structure by marcius to the group SGU-CIPF on 2006-09-07 17:40:41 as along with 5 people and 1 group NicholasErho nikkiwithers svozil eckart_bindewald debatebob BioinfoCIPF
	The RNA Ontology Consortium: an open invitation to the RNA community. [My Copy] RNA, Vol. 12, No. 4. (April 2006), pp. 533-541. by N. B. Leontis, R. B. Altman, H. M. Berman, et al.S. E. Brenner, J. W. Brown, D. R. Engelke, S. C. Harvey, S. R. Holbrook, F. Jossinet, S. E. Lewis, F. Major, D. H. Mathews, J. S. Richardson, J. R. Williamson, E. Westhof posted to bioinformatics classification clustering rna sequence structure by marcius to the group SGU-CIPF on 2006-09-07 17:37:08 as along with 4 people and 1 group toerst dullhunk debatebob reyez BioinfoCIPF
	Computer modeling 16 S ribosomal RNA [My Copy] Journal of Molecular Biology, Vol. 221, No. 3. (5 October 1991), pp. 889-907. by John M. Hubbard, John E. Hearst posted to algorithms bioinformatics rna structure_prediction by marcius to the group SGU-CIPF on 2006-09-07 13:31:07 as along with 1 person and 1 group eckart_bindewald BioinfoCIPF
	Revolutions in RNA Secondary Structure Prediction [My Copy] Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532. by David H. Mathews posted to review rna secondary_structure by marcius to the group SGU-CIPF on 2006-09-06 10:37:25 as along with 12 people and 1 group rb_india bmduggan heliopais arcticrasta penka Eonwe cthachuk emidio_capriotti physics maralena winterschlaefer austin BioinfoCIPF
	Secondary Structure Prediction of Interacting RNA Molecules [My Copy] Journal of Molecular Biology, Vol. 345, No. 5., pp. 987-1001. by Mirela Andronescu, Zhi C. Zhang, Anne Condon posted to algorithms bioinformatics rna secondary_structure software by marcius to the group SGU-CIPF on 2006-09-06 10:36:45 as along with 5 people and 1 group rb_india eckart_bindewald Hosna cthachuk physics BioinfoCIPF
	A new algorithm for RNA secondary structure design. [My Copy] J Mol Biol, Vol. 336, No. 3. (20 February 2004), pp. 607-624. by M. Andronescu, A. P. Fejes, F. Hutter, H. H. Hoos, A. Condon posted to algorithms bioinformatics rna secondary_structure software by marcius to the group SGU-CIPF on 2006-09-06 10:36:07 as along with 6 people and 3 groups gzm55 eckart_bindewald gane5h cthachuk mgaldzic smallbadguy 18th-century_history_culture_and_society BioinfoCIPF CHIP
	RNAsoft: A suite of RNA secondary structure prediction and design software tools. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3416-3422. by M. Andronescu, R. Aguirre-Hernández, A. Condon, H. H. Hoos posted to bioinformatics rna secondary_structure software by marcius to the group SGU-CIPF on 2006-09-06 10:35:54 as along with 6 people and 3 groups eckart_bindewald stsaft Hosna cthachuk mgaldzic stajich BioinfoCIPF CHIP Mycology
	Analysis of internal loops within the RNA secondary structure in almost quadratic time. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 11. (1 June 2006), pp. 1317-1324. by A. Y. Ogurtsov, S. A. Shabalina, A. S. Kondrashov, M. A. Roytberg posted to algorithms rna secondary_structure by marcius to the group SGU-CIPF on 2006-09-06 10:35:26 as along with 2 people and 1 group hendrik85 cthachuk BioinfoCIPF
	Structure and dynamics of ribosomal RNA. [My Copy] Curr Opin Struct Biol, Vol. 8, No. 3. (June 1998), pp. 294-300. by S. A. Woodson, N. B. Leontis posted to review rna structure by marcius to the group SGU-CIPF on 2006-09-06 10:33:29 as along with 1 group BioinfoCIPF
	Conserved geometrical base-pairing patterns in RNA. [My Copy] Q Rev Biophys, Vol. 31, No. 4. (November 1998), pp. 399-455. by N. B. Leontis, E. Westhof posted to review rna structure by marcius to the group SGU-CIPF on 2006-09-06 10:33:20 as along with 1 group BioinfoCIPF
	The building blocks and motifs of RNA architecture. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 279-287. by N. B. Leontis, A. Lescoute, E. Westhof posted to prediction rna motif ribosome by marcius to the group SGU-CIPF on 2006-09-06 10:27:19 as along with 3 people and 1 group NicholasErho eckart_bindewald debatebob BioinfoCIPF
	Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules. [My Copy] Biochimie, Vol. 84, No. 9. (September 2002), pp. 961-973. by N. B. Leontis, J. Stombaugh, E. Westhof posted to motif prediction ribosome rna by marcius to the group SGU-CIPF on 2006-09-06 10:25:05 as along with 1 person and 1 group eckart_bindewald BioinfoCIPF
	The Rna World (Cold Spring Harbor Monograph Series) (Cold Spring Harbor Monograph Series) [My Copy] (14 October 2005) by Thomas R. Cech, John F. Atkins posted to evolution review rna by marcius to the group SGU-CIPF on 2006-08-24 15:31:06 as along with 1 person and 1 group tardigrade BioinfoCIPF
	Searching RNA motifs and their intermolecular contacts with constraint networks. [My Copy] Bioinformatics (4 July 2006) by P Thébault, S de Givry, T Schiex, C Gaspin posted to algorithms bioinformatics motif rna by marcius to the group SGU-CIPF on 2006-08-23 13:32:31 as along with 3 people and 3 groups tardigrade dquest bsmagic Bioinformatics BioinfoCIPF bioinplant
	CONTRAfold: RNA secondary structure prediction without physics-based models. [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006) by C. B. Do, D. A. Woods, S. Batzoglou posted to algorithms bioinformatics rna secondary_structure statistics by marcius to the group SGU-CIPF on 2006-08-23 13:19:28 as along with 7 people and 2 groups gulkur balajis tardigrade penka condon acarbo austin beta BioinfoCIPF
	A bayesian statistical algorithm for RNA secondary structure prediction. [My Copy] Comput Chem, Vol. 23, No. 3-4. (15 June 1999), pp. 387-400. by Y. Ding, C. E. Lawrence posted to bioinformatics rna secondary_structure statistics by marcius to the group SGU-CIPF on 2006-08-23 13:17:05 as along with 3 people and 2 groups eckart_bindewald arcticrasta condon beta BioinfoCIPF
	An RNA gene expressed during cortical development evolved rapidly in humans [My Copy] Nature, Vol. 443, No. 7108. (16 August 2006), pp. 167-172. by Katherine S. Pollard, Sofie R. Salama, Nelle Lambert, et al.Marie-Alexandra Lambot, Sandra Coppens, Jakob S. Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel, Andrew D. Kern, Colette Dehay, Haller Igel, Manuel Ares, Pierre Vanderhaeghen, David Haussler posted to evolution function rna by marcius to the group SGU-CIPF on 2006-08-23 09:49:50 as along with 16 people and 3 groups rvosa galka8_diploma brewbooks sriesenfeld Ema brian bpb nickluscombe larios joshuashen ealloza ce2benna lusk bpcusack nolodie rrhudson FAB-lab EBI-regulation BioinfoCIPF
	RNA Structure: Reading the Ribosome [My Copy] Science, Vol. 309, No. 5740. (02 September 2005), pp. 1508-1514. by Harry F. Noller posted to review ribosome rna structure by marcius to the group SGU-CIPF on 2006-08-10 17:13:16 as along with 3 people and 1 group zwang dayjm jarasch BioinfoCIPF
	MOLECULAR BIOLOGY: A New RNA Dimension to Genome Control. [My Copy] Science, Vol. 313, No. 5785. (21 July 2006), pp. 305-306. by R. W. Carthew posted to review rna by marcius to the group SGU-CIPF on 2006-08-02 17:53:51 as along with 8 people and 3 groups altotor dayjm eckart_bindewald tardigrade dchughes mtagaya jackjackjjj nicg G4ID BioinfoCIPF Genetics-of-Gambling
	RNA as a drug target: chemical, modelling, and evolutionary tools. [My Copy] Curr Opin Biotechnol, Vol. 9, No. 1. (February 1998), pp. 66-73. by T. Hermann, E. Westhof posted to disease docking drug review rna by marcius to the group SGU-CIPF on 2006-08-01 11:46:07 as along with 1 group BioinfoCIPF

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structure	667
bioinformatics	320
review	282
secondary_structure	228
prediction	199
evolution	182
folding	180
secondary	154
dna	135
protein	134
biophysics	129
ncrna	116
transcription	108
ribosome	107
polymerase	93
microrna	82
algorithms	80
expression	79
noncoding	79
jarasch	76
mirna	74
alignment	73
pseudoknots	72
pseudoknot	68
genome	63
gene	62
motif	62
c_elegans	60
celegans	60
caenorhabditis_elegans	58
elegans	58
nematode	58
wormbase	58
epigenetics	57
splicing	56
article	52
virus	52
sequencing	51
non-coding	50
function	49
mrna	49
trna	47
small	46
regulation	44
database	43
sequence	43
ribozyme	41
translation	41
human	38
yeast	38
helicase	37
methods	37
rnai	37
comparative	36
tertiary	36
editing	34
genomics	34
computational_biology	33
metagenomics	33
microarray	33
nmr	33
techniques	32
biology	31
software	31
design	30
statistics	30
cloned_genes	28
interaction	28
arabidopsis	27
cancer	27
chromatin	27
development	27
sirna	27
bio	26
binding	24
bioengineering	24
degradation	24
search	24
sequence_alignment	24
antisense	23
classification	23
drosophila	23
la	23
genetics	22
printed	22
rna_motif	22
transcriptome	22
utr	22
aptamer	21
cell	21
gene-regulation	21
interference	21
simulation	21
algorithm	20
unread	20
genetic	19
hiv	19
kinetics	19
network	19
rnasep	19

Group: SGU-CIPF - with tag rna [at least 200 articles] Export Sort

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