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Group: SGU-CIPF - with tag structure [86 articles]

Recent papers posted by members of the SGU-CIPF group with tag structure
  • RNA structure: experimental analysis.
    Curr Opin Microbiol (24 May 2007)
    by Brice Felden
    posted to structure rna review experimental by marcius to the group SGU-CIPF on 2007-06-12 12:56:46 as ** along with 3 people and 1 group penka emidio_capriotti debatebob BioinfoCIPF
  • Structural proteomics: from the molecule to the system
    Nature Structural & Molecular Biology, Vol. 14, No. 1., pp. 3-4.
    by Lucia Banci, Wolfgang Baumeister, Josefina Enfedaque, Udo Heinemann, Gunter Schneider, Israel Silman, Joel L Sussman
    posted to meeting proteomics review structural_genomics structure views by marcius to the group SGU-CIPF on 2007-01-09 09:39:59 as ** along with 1 person and 1 group gerry BioinfoCIPF
  • SCOR: a Structural Classification of RNA database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 392-394.
    by PS Klosterman, M Tamura, SR Holbrook, SE Brenner
    posted to databases rna structure by marcius to the group SGU-CIPF on 2006-12-21 14:21:00 as ** along with 1 person and 1 group debatebob BioinfoCIPF
  • RNA structure: the long and the short of it.
    Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 302-308.
    by SR Holbrook
    posted to review rna structure by marcius to the group SGU-CIPF on 2006-11-29 12:55:28 as ** along with 2 people and 1 group eckart_bindewald debatebob BioinfoCIPF
  • RNA structures and folding: from conventional to new issues in structure predictions.
    Curr Opin Struct Biol, Vol. 7, No. 2. (April 1997), pp. 229-235.
    by P Schuster, PF Stadler, A Renner
    posted to prediction review rna structure by marcius to the group SGU-CIPF on 2006-10-23 17:16:19 as ** along with 1 person and 1 group emidio_capriotti BioinfoCIPF
  • Structural basis for messenger RNA movement on the ribosome
    Nature (18 October 2006)
    by Gulnara Yusupova, Lasse Jenner, Bernard Rees, Dino Moras, Marat Yusupov
    posted to ribosome rna structure by marcius to the group SGU-CIPF on 2006-10-20 14:25:18 as ** along with 1 person and 1 group braingrind BioinfoCIPF
  • Sampling Realistic Protein Conformations Using Local Structural Bias
    PLoS Computational Biology, Vol. 2, No. 9. (1 September 2006), e131.
    by Thomas Hamelryck, John T Kent, Anders Krogh
    posted to biophysics clustering computational_biology dynamics structure by marcius to the group SGU-CIPF on 2006-09-29 08:57:03 as ** along with 1 person and 1 group mijam BioinfoCIPF
  • A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator.
    Proc Natl Acad Sci U S A, Vol. 95, No. 18. (1 September 1998), pp. 10413-10418.
    by S Rhee, RG Martin, JL Rosner, DR Davies
    posted to protein structure by marcius to the group SGU-CIPF on 2006-09-27 15:15:44 as ** along with 1 person and 1 group ezralanglois BioinfoCIPF
  • Natural history as a predictor of protein evolvability
    Protein Engineering, Design and Selection, Vol. 19, No. 10. (2006), pp. 439-442.
    by O'Loughlin, L Taryn, Patrick, M Wayne, Matsumura, Ichiro
    posted to biology evolution protein structure by marcius to the group SGU-CIPF on 2006-09-27 13:52:56 as ** along with 1 group BioinfoCIPF
  • Application of the RNA structure classification system, CSNA, to NMR structure determination.
    Nucleic Acids Res Suppl, No. 3. (2003), pp. 127-128.
    by S Baba, A Takasu, K Watanabe, G Kawai
    posted to classification ontology rna structure by marcius to the group SGU-CIPF on 2006-09-13 15:19:00 as ** along with 1 person and 1 group eckart_bindewald BioinfoCIPF
  • Computational methods for RNA structure determination.
    Curr Opin Struct Biol, Vol. 11, No. 3. (June 2001), pp. 282-286.
    by F Major, R Griffey
    posted to algorithms bioinformatics review rna structure by marcius to the group SGU-CIPF on 2006-09-13 15:18:38 as ** along with 3 people and 1 group lillekatt P2324548 eckart_bindewald BioinfoCIPF
  • Mass spectrometry and the search for moonlighting proteins.
    Mass Spectrom Rev, Vol. 24, No. 6. (c 2005), pp. 772-782.
    by CJ Jeffery
    posted to function protein structure by marcius to the group SGU-CIPF on 2006-09-08 16:34:58 as ** along with 1 person and 1 group tny BioinfoCIPF
  • Protein families and their evolution-a structural perspective.
    Annu Rev Biochem, Vol. 74 (2005), pp. 867-900.
    by CA Orengo, JM Thornton
    posted to evolution protein review structure by marcius to the group SGU-CIPF on 2006-09-08 12:28:15 as ** along with 13 people and 5 groups sim82 nigham ana barry tjimenez jwm chad_davis Einat Schmidtc sriram_s ezotenko redelings medic0747 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF
  • Gene3D: modelling protein structure, function and evolution.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Yeats, M Maibaum, R Marsden, M Dibley, D Lee, S Addou, CA Orengo
    posted to function protein server structure by marcius to the group SGU-CIPF on 2006-09-08 12:27:34 as ** along with 1 person and 1 group siebertm BioinfoCIPF
  • Exploiting protein structure data to explore the evolution of protein function and biological complexity.
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 425-440.
    by RL Marsden, JA Ranea, A Sillero, O Redfern, C Yeats, M Maibaum, D Lee, S Addou, GA Reeves, TJ Dallman, CA Orengo
    posted to evolution function protein structure by marcius to the group SGU-CIPF on 2006-09-08 12:26:40 as ** along with 1 person and 1 group jsnoddy BioinfoCIPF
  • Structural Diversity of Domain Superfamilies in the CATH Database.
    J Mol Biol (2 June 2006)
    by Gabrielle A A Reeves, Timothy J J Dallman, Oliver C C Redfern, Adrian Akpor, Christine A A Orengo
    posted to classification databases structure by marcius to the group SGU-CIPF on 2006-09-08 12:25:48 as ** along with 2 people and 4 groups barry sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF baker-group
  • Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
    BMC Bioinformatics, Vol. 7 (04 September 2006), 400.
    by Robin D Dowell, Sean R Eddy
    posted to algorithms alignment bioinformatics prediction rna structure by marcius to the group SGU-CIPF on 2006-09-07 22:04:11 as ** along with 4 people and 1 group reyez eckart_bindewald dquest ilh BioinfoCIPF
  • SCOR: Structural Classification of RNA, version 2.0.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by M Tamura, DK Hendrix, PS Klosterman, NR Schimmelman, SE Brenner, SR Holbrook
    posted to databases rna structure by marcius to the group SGU-CIPF on 2006-09-07 17:42:13 as ** along with 3 people and 2 groups reyez condon debatebob beta BioinfoCIPF
  • MeRNA: a database of metal ion binding sites in RNA structures.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by LR Stefan, R Zhang, AG Levitan, DK Hendrix, SE Brenner, SR Holbrook
    posted to databases rna structure by marcius to the group SGU-CIPF on 2006-09-07 17:41:37 as ** along with 1 group BioinfoCIPF
  • RNA structural motifs: building blocks of a modular biomolecule.
    Q Rev Biophys, Vol. 38, No. 3. (August 2005), pp. 221-243.
    by DK Hendrix, SE Brenner, SR Holbrook
    posted to motif rna structure by marcius to the group SGU-CIPF on 2006-09-07 17:40:41 as ** along with 2 people and 1 group eckart_bindewald debatebob BioinfoCIPF
  • The RNA Ontology Consortium: an open invitation to the RNA community.
    RNA, Vol. 12, No. 4. (April 2006), pp. 533-541.
    by NB Leontis, RB Altman, HM Berman, SE Brenner, JW Brown, DR Engelke, SC Harvey, SR Holbrook, F Jossinet, SE Lewis, F Major, DH Mathews, JS Richardson, JR Williamson, E Westhof
    posted to bioinformatics classification clustering rna sequence structure by marcius to the group SGU-CIPF on 2006-09-07 17:37:08 as ** along with 2 people and 1 group reyez debatebob BioinfoCIPF
  • Structure and dynamics of ribosomal RNA.
    Curr Opin Struct Biol, Vol. 8, No. 3. (June 1998), pp. 294-300.
    by SA Woodson, NB Leontis
    posted to review rna structure by marcius to the group SGU-CIPF on 2006-09-06 10:33:29 as ** along with 1 group BioinfoCIPF
  • Conserved geometrical base-pairing patterns in RNA.
    Q Rev Biophys, Vol. 31, No. 4. (November 1998), pp. 399-455.
    by NB Leontis, E Westhof
    posted to review rna structure by marcius to the group SGU-CIPF on 2006-09-06 10:33:20 as ** along with 1 group BioinfoCIPF
  • SCOPPI: a structural classification of protein-protein interfaces.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Winter, A Henschel, WK Kim, M Schroeder
    posted to protein_interactions servers structure by marcius to the group SGU-CIPF on 2006-08-31 20:21:58 as ** along with 7 people and 3 groups kintoki ana kuhn bicko chad_davis choonpeng Evangelia structural_bioinformatics Bioinformatics BioinfoCIPF
  • Structural biology: Antiviral drugs fit for a purpose
    Nature (16 August 2006)
    by Ming Luo
    posted to drug review structure views virus by marcius to the group SGU-CIPF on 2006-08-23 13:20:14 as ** along with 1 group BioinfoCIPF
  • RNA Structure: Reading the Ribosome
    Science, Vol. 309, No. 5740. (02 September 2005), pp. 1508-1514.
    by Harry F Noller
    posted to review ribosome rna structure by marcius to the group SGU-CIPF on 2006-08-10 17:13:16 as ** along with 2 people and 1 group dayjm jarasch BioinfoCIPF
  • Altered structural fluctuations in duplex RNA versus DNA: a conformational switch involving base pair opening.
    Nucleic Acids Res, Vol. 31, No. 24. (15 December 2003), pp. 7131-7140.
    by Y Pan, AD MacKerell
    posted to biophysics dna molecular_dynamics rna structure by marcius to the group SGU-CIPF on 2006-07-28 12:39:42 as ** along with 1 group BioinfoCIPF
  • The correlation between protein stability and dipole moment: a critical test
    Protein Engineering, Design and Selection, Vol. 19, No. 8. (August 2006), pp. 355-358.
    by Wunderlich, Michael, Schmid, X Franz
    posted to biophysics experimental protein stability structure by marcius to the group SGU-CIPF on 2006-07-26 14:35:56 as ** along with 1 group BioinfoCIPF
  • Mass spectrometry of RNA
    Trends in Biochemical Sciences, Vol. 31, No. 3. (March 2006), pp. 173-181.
    by Benjamin Thomas, Alexandre V Akoulitchev
    posted to biophysics rna structure by marcius to the group SGU-CIPF on 2006-07-20 12:23:20 as ** along with 1 person and 2 groups cdawson BioinfoCIPF GIG
  • RNA allostery glimpsed
    Nature Structural & Molecular Biology, Vol. 13, No. 7., pp. 569-571.
    by Wade C Winkler, Charles E Dann
    posted to function rna structure by marcius to the group SGU-CIPF on 2006-07-18 12:28:51 as ** along with 1 group BioinfoCIPF
  • Native secondary structure formation in RNA may be a slave to tertiary folding
    PNAS, Vol. 95, No. 20. (29 September 1998), pp. 11506-11508.
    by D Thirumalai
    posted to rna secondary_structure structure by marcius to the group SGU-CIPF on 2006-07-13 10:29:29 as ** along with 1 person and 2 groups condon beta BioinfoCIPF
  • An algorithm for detecting homologues of known structured RNAs in genomes.
    Proc IEEE Comput Syst Bioinform Conf (2004), pp. 300-310.
    by SY Le, JV Maizel, K Zhang
    posted to algorithms bioinformatics rna structure by marcius to the group SGU-CIPF on 2006-07-13 10:23:58 as ** along with 2 people and 3 groups arcticrasta bsmagic Bioinformatics BioinfoCIPF bioinplant
  • Molecular basis for temperature sensing by an RNA thermometer
    The EMBO Journal, Vol. aop, No. current. (25 May 2006)
    by Saheli Chowdhury, Christophe Maris, Frederic HT Allain, Franz Narberhaus
    posted to nmr rna structure by marcius to the group SGU-CIPF on 2006-05-22 19:36:51 as ** along with 2 people and 2 groups bala 3times3 BioinfoCIPF DictyosteliumGroup
  • Candidates for Novel RNA Topologies
    Journal of Molecular Biology, Vol. 341, No. 5. (27 August 2004), pp. 1129-1144.
    by Namhee Kim, Nahum Shiffeldrim, Hin H Gan, Tamar Schlick
    posted to bioinformatics classification clustering rna structure by marcius to the group SGU-CIPF on 2006-05-19 22:17:31 as ** along with 2 people and 2 groups eckart_bindewald condon beta BioinfoCIPF
  • Tertiary Motifs in RNA Structure and Folding.
    Angew Chem Int Ed Engl, Vol. 38, No. 16. (August 1999), pp. 2326-2343.
    by RT Batey, RP Rambo, JA Doudna
    posted to folding rna structure by marcius to the group SGU-CIPF on 2006-05-18 00:21:04 as ** along with 3 people and 2 groups condon jarasch physics beta BioinfoCIPF
  • Structure-guided recombination creates an artificial family of cytochromes p450.
    PLoS Biol, Vol. 4, No. 5. (May 2006)
    by CR Otey, M Landwehr, JB Endelman, K Hiraga, JD Bloom, FH Arnold
    posted to bioengineering function protein_fragments structure by marcius to the group SGU-CIPF on 2006-05-16 19:22:13 as ** along with 1 group BioinfoCIPF
  • Energetics and cooperativity of tertiary hydrogen bonds in RNA structure.
    Biochemistry, Vol. 38, No. 27. (6 July 1999), pp. 8691-8702.
    by SK Silverman, TR Cech
    posted to biophysics rna structure by marcius to the group SGU-CIPF on 2006-05-15 22:55:04 as ** along with 1 person and 2 groups condon beta BioinfoCIPF
  • RNA folding causes secondary structure rearrangement.
    Proc Natl Acad Sci U S A, Vol. 95, No. 20. (29 September 1998), pp. 11555-11560.
    by M Wu, I Tinoco
    posted to rna secondary_structure structure by marcius to the group SGU-CIPF on 2006-05-12 17:51:40 as ** along with 4 people and 2 groups austin condon Hosna apop beta BioinfoCIPF
  • Physical Origins of Protein Superfamilies.
    J Mol Biol (6 February 2006)
    by Konstantin B B Zeldovich, Igor N N Berezovsky, Eugene I I Shakhnovich
    posted to biophysics computational_biology evolution protein structure by marcius to the group SGU-CIPF on 2006-04-27 20:29:04 as ** along with 3 people and 2 groups Einat laurabailey happy_manatee structural_bioinformatics BioinfoCIPF
  • Stitching together RNA tertiary architectures
    Journal of Molecular Biology, Vol. 294, No. 4. (10 December 1999), pp. 829-849.
    by Thomas Hermann, Dinshaw J Patel
    posted to biophysics folding rna structure by marcius to the group SGU-CIPF on 2006-04-24 07:42:53 as ** along with 3 people and 2 groups ttjoseph condon jarasch beta BioinfoCIPF
  • Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.
    Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15310-15315.
    by A Xayaphoummine, T Bucher, F Thalmann, H Isambert
    posted to bioinformatics rna secondary_structure structure by marcius to the group SGU-CIPF on 2006-04-21 22:12:59 as ** along with 6 people and 2 groups evaf austin arcticrasta condon Hosna Kiarostami beta BioinfoCIPF
  • Complete probabilistic analysis of RNA shapes.
    BMC Biol, Vol. 4, No. 1. (15 February 2006)
    by Bjorn Voss, Robert Giegerich, Marc Rehmsmeier
    posted to bioinformatics rna statistics structure by marcius to the group SGU-CIPF on 2006-04-19 20:06:56 as ** along with 2 people and 3 groups andersbj condon microRNA beta BioinfoCIPF
  • Pseudoknots: RNA structures with diverse functions.
    PLoS Biol, Vol. 3, No. 6. (June 2005)
    by DW Staple, SE Butcher
    posted to review rna structure by marcius to the group SGU-CIPF on 2006-04-19 20:06:22 as ** along with 4 people and 2 groups austin arcticrasta condon Hosna beta BioinfoCIPF
  • Asymmetry in RNA pseudoknots: observation and theory
    Nucleic Acids Research, Vol. 33, No. 7. (2005), pp. 2210-2214.
    by Daniel P Aalberts, Nathan O Hodas
    posted to rna structure by marcius to the group SGU-CIPF on 2006-04-17 04:36:20 as ** along with 1 person and 2 groups condon beta BioinfoCIPF
  • In vivo assembly of functional U7 snRNP requires RNA backbone flexibility within the Sm-binding site
    Nature Structural & Molecular Biology, Vol. 13, No. 4. (19 March 2006), pp. 347-353.
    by Nikolay G Kolev, Joan A Steitz
    posted to rna structure by marcius to the group SGU-CIPF on 2006-04-05 07:46:31 as ** along with 1 group BioinfoCIPF
  • Structural biologyDesigner labels
    Nature, Vol. 440, No. 7080. (01 March 2006), pp. 40-40.
    by Stanley J Opella
    posted to biology news structure by marcius to the group SGU-CIPF on 2006-03-01 22:51:31 as ** along with 1 group BioinfoCIPF
  • Compact and ordered collapse of randomly generated RNA sequences
    Nature Structural & Molecular Biology, Vol. 12, No. 12. (06 November 2005), pp. 1130-1136.
    by Erik A Schultes, Alexander Spasic, Udayan Mohanty, David P Bartel
    posted to biophysics rna structure by marcius to the group SGU-CIPF on 2006-02-27 23:15:47 as ** along with 1 person and 2 groups condon beta BioinfoCIPF
  • Multiple Alignment of protein structures and sequences for VMD
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 504-506.
    by John Eargle, Dan Wright, Zaida Luthey-Schulten
    posted to bioinformatics software structure structure_alignment by marcius to the group SGU-CIPF on 2006-02-16 18:13:52 as ** along with 1 person and 1 group dimka BioinfoCIPF
  • Correlation between evolutionary structural development and protein folding.
    Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 18950-18955.
    by C Nagao, TP Terada, T Yomo, M Sasai
    posted to biophysics comparative_modeling evolution protein_folding structure by marcius to the group SGU-CIPF on 2006-02-09 01:09:32 as ** along with 2 people and 1 group apaydin shuns BioinfoCIPF
  • The structure of the 80S ribosome from Trypanosoma cruzi reveals unique rRNA components.
    Proc Natl Acad Sci U S A, Vol. 102, No. 29. (19 July 2005), pp. 10206-10211.
    by H Gao, MJ Ayub, MJ Levin, J Frank
    posted to ribosome rna structure by marcius to the group SGU-CIPF on 2006-02-07 18:18:38 as ** along with 1 person and 1 group simone BioinfoCIPF
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