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Group: TNT - library [113 articles]

Recent papers posted by members of the TNT group
  • Dual Role of Response Regulator StyR in Styrene Catabolism Regulation
    Appl. Environ. Microbiol., Vol. 71, No. 9. (1 September 2005), pp. 5411-5419.
    by Livia Leoni, Giordano Rampioni, Valeria Di Stefano, Elisabetta Zennaro
    posted to transcription styrene regulation for-the-review biodegradation binding by gcarbajosa to the group TNT on 2008-07-17 05:47:41 as ***
  • Hierarchical binding of the TodT response regulator to its multiple recognition sites at the tod pathway operon promoter.
    Journal of molecular biology, Vol. 376, No. 2. (15 February 2008), pp. 325-337.
    by J Lacal, ME Guazzaroni, A Busch, T Krell, JL Ramos
    posted to transcription tcrst regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:44:49 as ***
  • The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 21. (23 May 2006), pp. 8191-8196.
    by J Lacal, A Busch, ME Guazzaroni, T Krell, JL Ramos
    posted to transcription tcst regulation for-the-review dna-bending biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:42:43 as ***
  • CatM Regulation of the benABCDE Operon: Functional Divergence of Two LysR-Type Paralogs in Acinetobacter baylyi ADP1
    Appl. Environ. Microbiol., Vol. 72, No. 3. (1 March 2006), pp. 1749-1758.
    by Obidimma C Ezezika, Lauren S Collier-Hyams, Haley A Dale, Andrew C Burk, Ellen L Neidle
    posted to transcription regulation lysr for-the-review evolution catm biodegradation benm by gcarbajosa to the group TNT on 2008-07-16 21:40:17 as ***
  • Functional identification of novel genes involved in the glutathione-independent gentisate pathway in Corynebacterium glutamicum.
    Appl Environ Microbiol, Vol. 71, No. 7. (July 2005), pp. 3442-3452.
    by XH Shen, CY Jiang, Y Huang, ZP Liu, SJ Liu
    posted to transcription regulation gentisate for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:37:58 as ***
  • Oligomerization of BenM, a LysR-type transcriptional regulator: structural basis for the aggregation of proteins in this family
    Acta Crystallographica Section F: Structural Biology and Crystallization Communications, Vol. 63, No. 5. (May 2007), pp. 361-368.
    by Ezezika, , Haddad, , Neidle, , Momany,
    posted to transcription structure regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:35:09 as ****
  • Nucleotide sequence, organization and characterization of the (halo)aromatic acid catabolic plasmid pA81 from Achromobacter xylosoxidans A8.
    Research in microbiology, Vol. 159, No. 2. (March 2008), pp. 118-127.
    by V Jencova, H Strnad, Z Chodora, P Ulbrich, C Vlcek, WJ Hickey, V Paces
    posted to transcription regulation for-the-review evolution biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:34:18 as **
  • Multiple-Level Regulation of Genes for Protocatechuate Degradation in Acinetobacter baylyi Includes Cross-Regulation
    Appl. Environ. Microbiol., Vol. 73, No. 1. (1 January 2007), pp. 232-242.
    by Simone Y Siehler, Sureyya Dal, Rita Fischer, Patricia Patz, Ulrike Gerischer
    posted to transcription regulation pcau for-the-review cross-regulation biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:32:29 as ***
  • Proteomic and transcriptional characterization of aromatic degradation pathways in Rhodoccocus sp. strain TFB.
    Proteomics (16 March 2006)
    by Laura Tomás-Gallardo, Inés Canosa, Eduardo Santero, Emilio Camafeita, Enrique Calvo, Juan A A López, Belén Floriano
    posted to transcription rhodococcus regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:30:59 as *** along with 1 person rabu
  • Identification and expression of the cym, cmt, and tod catabolic genes from Pseudomonas putida KL47: expression of the regulatory todST genes as a factor for catabolic adaptation.
    Journal of microbiology (Seoul, Korea), Vol. 44, No. 2. (April 2006), pp. 192-199.
    by K Lee, EK Ryu, KS Choi, MC Cho, JJ Jeong, EN Choi, SO Lee, DY Yoon, I Hwang, CK Kim
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:18:28 as **
  • The naphthalene catabolic (nag) genes of Polaromonas naphthalenivorans CJ2: evolutionary implications for two gene clusters and novel regulatory control.
    Appl Environ Microbiol, Vol. 72, No. 2. (February 2006), pp. 1086-1095.
    by CO Jeon, M Park, HS Ro, W Park, EL Madsen
    posted to transcription regulation integration for-the-review evolution biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:14:06 as ***
  • Ligand-responsive transcriptional regulation by members of the MarR family of winged helix proteins.
    Current issues in molecular biology, Vol. 8, No. 1. (January 2006), pp. 51-62.
    by SP Wilkinson, A Grove
    posted to transcription regulation for-the-review by gcarbajosa to the group TNT on 2008-07-16 21:12:10 as **
  • Transcriptional Organization of Genes for Protocatechuate and Quinate Degradation from Acinetobacter sp. Strain ADP1
    Appl. Environ. Microbiol., Vol. 71, No. 2. (1 February 2005), pp. 1025-1034.
    by Sureyya Dal, Gaby Trautwein, Ulrike Gerischer
    posted to transcription regulation pcau integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:04:11 as ***
  • Substrate-Dependent Regulation of Anaerobic Degradation Pathways for Toluene and Ethylbenzene in a Denitrifying Bacterium, Strain EbN1
    J. Bacteriol., Vol. 187, No. 4. (15 February 2005), pp. 1493-1503.
    by Simon Kuhner, Lars Wohlbrand, Ingo Fritz, Wasco Wruck, Claus Hultschig, Peter Hufnagel, Michael Kube, Richard Reinhardt, Ralf Rabus
    posted to transcription toluene regulation integration for-the-review ethylbenzene biodegradation by gcarbajosa to the group TNT on 2008-07-16 21:00:05 as ***
  • BzdR, a repressor that controls the anaerobic catabolism of benzoate in Azoarcus sp. CIB, is the first member of a new subfamily of transcriptional regulators.
    The Journal of biological chemistry, Vol. 280, No. 11. (18 March 2005), pp. 10683-10694.
    by MJ Barragán, B Blázquez, MT Zamarro, JM Mancheño, JL García, E Díaz, M Carmona
    posted to transcription regulation new-family for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 20:41:24 as ****
  • Transcriptomic Assessment of Isozymes in the Biphenyl Pathway of Rhodococcus sp. Strain RHA1
    Appl. Environ. Microbiol., Vol. 72, No. 9. (1 September 2006), pp. 6183-6193.
    by Edmilson R Goncalves, Hirofumi Hara, Daisuke Miyazawa, Julian E Davies, Lindsay D Eltis, William W Mohn
    posted to transcriptomic transcription regulation integration for-the-review biodegradation assesment by gcarbajosa to the group TNT on 2008-07-16 20:04:09 as ***
  • Transcriptomic Analysis Reveals a Bifurcated Terephthalate Degradation Pathway in Rhodococcus sp. Strain RHA1
    J. Bacteriol., Vol. 189, No. 5. (1 March 2007), pp. 1641-1647.
    by Hirofumi Hara, Lindsay D Eltis, Julian E Davies, William W Mohn
    posted to transcriptomics transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 20:00:29 as **
  • Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400.
    Appl Environ Microbiol, Vol. 72, No. 1. (January 2006), pp. 585-595.
    by VJ Denef, JA Klappenbach, MA Patrauchan, C Florizone, JL Rodrigues, TV Tsoi, W Verstraete, LD Eltis, JM Tiedje
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 19:57:33 as **
  • Catabolism of Benzoate and Phthalate in Rhodococcus sp. Strain RHA1: Redundancies and Convergence
    J. Bacteriol., Vol. 187, No. 12. (15 June 2005), pp. 4050-4063.
    by Marianna A Patrauchan, Christine Florizone, Manisha Dosanjh, William W Mohn, Julian Davies, Lindsay D Eltis
    posted to transcription regulation phtalate for-the-review biodegradation benzoate by gcarbajosa to the group TNT on 2008-07-16 19:50:09 as ***
  • Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in <B><I>Bacillus subtilis</I></B>
    PROTEOMICS, Vol. 7, No. 9. (2007), pp. 1391-1408.
    by Nguyen Van Duy, Carmen Wolf, Ulrike Mäder, Michael Lalk, Peter Langer, Ulrike Lindequist, Michael Hecker, Haike Antelmann
    posted to transcription regulation marr for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 19:04:56 as ***
  • Coregulation by Phenylacetyl-Coenzyme A-Responsive PaaX Integrates Control of the Upper and Lower Pathways for Catabolism of Styrene by Pseudomonas sp. Strain Y2
    J. Bacteriol., Vol. 188, No. 13. (1 July 2006), pp. 4812-4821.
    by Del, David Bartolome-Martin, Cristina Fernandez, Sergio Alonso, Jose L Garcia, Eduardo Diaz, Victoria Shingler, Julian Perera
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:51:07 as ***
  • Characterization of HbpR binding by site-directed mutagenesis of its DNA-binding site and by deletion of the effector domain.
    The FEBS journal, Vol. 272, No. 7. (April 2005), pp. 1756-1766.
    by D Tropel, JR van der Meer
    posted to transcription regulation for-the-review biodegradation binding by gcarbajosa to the group TNT on 2008-07-16 18:45:16 as **
  • Fluoranthene metabolism and associated proteins in <B><I>Mycobacterium</I></B> sp. JS14
    PROTEOMICS, Vol. 7, No. 12. (2007), pp. 2059-2069.
    by Sung-Eun Lee, Jong-Su Seo, Young-Soo Keum, Kwang-Jun Lee, Qing X Li
    posted to transcription regulation pathway for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:38:58 as ***
  • Web-type evolution of rhodococcus gene clusters associated with utilization of naphthalene.
    Applied and environmental microbiology, Vol. 71, No. 4. (April 2005), pp. 1754-1764.
    by LA Kulakov, S Chen, CC Allen, MJ Larkin
    posted to transcription regulation for-the-review evolution biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:34:56 as ***
  • Transcriptional Regulation of the ant Operon, Encoding Two-Component Anthranilate 1,2-Dioxygenase, on the Carbazole-Degradative Plasmid pCAR1 of Pseudomonas resinovorans Strain CA10
    J. Bacteriol., Vol. 186, No. 20. (15 October 2004), pp. 6815-6823.
    by Masaaki Urata, Masatoshi Miyakoshi, Satoshi Kai, Kana Maeda, Hiroshi Habe, Toshio Omori, Hisakazu Yamane, Hideaki Nojiri
    posted to transcription regulation for-the-review carbazole biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:26:37 as ***
  • Cloning, Deletion, and Characterization of PadR, the Transcriptional Repressor of the Phenolic Acid Decarboxylase-Encoding padA Gene of Lactobacillus plantarum
    Appl. Environ. Microbiol., Vol. 70, No. 4. (1 April 2004), pp. 2146-2153.
    by Jerome Gury, Lise Barthelmebs, Ngoc P Tran, Charles Divies, Jean-Francois Cavin
    posted to transcription regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:24:55 as ***
  • notes Biphenyl dioxygenases: functional versatilities and directed evolution.
    J Bacteriol, Vol. 186, No. 16. (August 2004), pp. 5189-5196.
    by K Furukawa, H Suenaga, M Goto
    posted to transcription regulation for-the-review evolution biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:18:40 as *** along with 2 people robert rabu
  • Cross-Regulation of Biphenyl- and Salicylate-Catabolic Genes by Two Regulatory Systems in Pseudomonas pseudoalcaligenes KF707
    J. Bacteriol., Vol. 188, No. 13. (1 July 2006), pp. 4690-4697.
    by Hidehiko Fujihara, Hideyuki Yoshida, Tetsuya Matsunaga, Masatoshi Goto, Kensuke Furukawa
    posted to transcription regulation integraqtion for-the-review cross-regulation biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:10:56 as ***
  • notes Oxygenases and dehalogenases: molecular approaches to efficient degradation of chlorinated environmental pollutants
    (October 2006)
    by K Furukawa
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 18:07:10 as ***
  • Oxygen-Dependent Regulation of the Central Pathway for the Anaerobic Catabolism of Aromatic Compounds in Azoarcus sp. Strain CIB
    J. Bacteriol., Vol. 188, No. 7. (1 April 2006), pp. 2343-2354.
    by Gonzalo Durante-Rodriguez, Maria T Zamarro, Jose L Garcia, Eduardo Diaz, Manuel Carmona
    posted to transcription regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 17:56:19 as ***
  • Molecular Characterization of a High-Affinity Xylobiose Transporter of Streptomyces thermoviolaceus OPC-520 and Its Transcriptional Regulation
    J. Bacteriol., Vol. 186, No. 4. (15 February 2004), pp. 1029-1037.
    by Hiroshi Tsujibo, Mitsuo Kosaka, Sadao Ikenishi, Takaji Sato, Katsushiro Miyamoto, Yoshihiko Inamori
    posted to transcription regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 17:53:38 as ***
  • Regulation of Tetralin Biodegradation and Identification of Genes Essential for Expression of thn Operons
    J. Bacteriol., Vol. 186, No. 18. (15 September 2004), pp. 6101-6109.
    by O Martinez-Perez, E Moreno-Ruiz, B Floriano, E Santero
    posted to transcription regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 17:44:08 as ***
  • Identification of two-component regulatory genes involved in o-xylene degradation by Rhodococcus sp. strain DK17.
    J Microbiol., Vol. 1, No. 43. (February 2005), pp. 49-53.
    by D Kim, JC Chae, GJ Zylstra, HY Sohn, GS Kwon, E Kim
    posted to transcription tcst regulation o-xylene for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 17:26:10 as ***
  • The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context.
    BMC biology, Vol. 3 (2005)
    by J Song, CA Bonner, M Wolinsky, RA Jensen
    posted to transcription regulation for-the-review evolution biodegradation by gcarbajosa to the group TNT on 2008-07-16 17:12:29 as *** along with 1 person min013
  • A Two-component Hydroxylase Involved in the Assimilation of 3-Hydroxyphenyl Acetate in Pseudomonas putida
    J. Biol. Chem., Vol. 280, No. 28. (15 July 2005), pp. 26435-26447.
    by Elsa Arias-Barrau, Angel Sandoval, German Naharro, Elias R Olivera, Jose M Luengo
    posted to transcription tcst regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 16:59:08 as ***
  • Functional and transcriptional analyses of the initial oxygenase genes for acenaphthene degradation from Sphingomonas sp. strain A4
    Microbiology, Vol. 152, No. 8. (1 August 2006), pp. 2455-2467.
    by Atsushi Kouzuma, Onruthai Pinyakong, Hideaki Nojiri, Toshio Omori, Hisakazu Yamane, Hiroshi Habe
    posted to transcription regulation lysr for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 16:27:04 as ***
  • Genome sequence of the chlorinated compound–respiring bacterium Dehalococcoides species strain CBDB1
    Nature Biotechnology, Vol. 23, No. 10. (21 August 2005), pp. 1269-1273.
    by Michael Kube, Alfred Beck, Stephen H Zinder, Heiner Kuhl, Richard Reinhardt, Lorenz Adrian
    posted to transcription tcrst regulation marr genome for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-16 16:16:04 as ** along with 1 person and 1 group beatrizfernandez Microbial-Ecology
  • Benzoate Catabolite Repression of the Phthalate Degradation Pathway in Rhodococcus sp. Strain DK17
    Appl. Environ. Microbiol., Vol. 73, No. 4. (15 February 2007), pp. 1370-1374.
    by Ki Y Choi, Gerben J Zylstra, Eungbin Kim
    posted to transcription regulation integration for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-14 19:36:41 as ***
  • Chromosomally located gene fusions constructed in Acinetobacter sp. ADP1 for the detection of salicylate
    Environmental Microbiology, Vol. 7, No. 9. (September 2005), pp. 1339-1348.
    by Wei E Huang, Hui Wang, Hongjun Zheng, Linfeng Huang, Andrew C Singer, Ian Thompson, Andrew S Whiteley
    posted to transcription synthetic-biology regulation for-the-review biosensors biodegradation by gcarbajosa to the group TNT on 2008-07-14 19:09:15 as *** along with 1 person andrewcsinger
  • Quantitative in situ assay of salicylic acid in tobacco leaves using a genetically modified biosensor strain of Acinetobacter sp. ADP1
    The Plant Journal, Vol. 46, No. 6. (June 2006), pp. 1073-1083.
    by Huang, E Wei, Huang, Linfeng, Preston, M Gail, Naylor, Martin, Carr, P John, Li, Yanhong, Singer, C Andrew, Whiteley, S Andrew, Wang, Hui
    posted to transcription synthetic-biology regulation for-the-review biosensors biodegradation by gcarbajosa to the group TNT on 2008-07-14 19:05:48 as ***
  • Transcriptional regulation of catabolic pathways for aromatic compounds in Corynebacterium glutamicum
    Genet Mol Res
    by K Brinkrolf, I Brune, A Tauch
    posted to transcription regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-14 17:07:39 as ***
  • Characterization of Novel Carbazole Catabolism Genes from Gram-Positive Carbazole Degrader Nocardioides aromaticivorans IC177
    Appl. Environ. Microbiol., Vol. 72, No. 5. (1 May 2006), pp. 3321-3329.
    by Kengo Inoue, Hiroshi Habe, Hisakazu Yamane, Hideaki Nojiri
    posted to trancription regulation for-the-review carbazole biodegradation by gcarbajosa to the group TNT on 2008-07-14 16:48:41 as ***
  • Differentiation of Carbazole Catabolic Operons by Replacement of the Regulated Promoter via Transposition of an Insertion Sequence
    J. Biol. Chem., Vol. 281, No. 13. (31 March 2006), pp. 8450-8457.
    by Masatoshi Miyakoshi, Masaaki Urata, Hiroshi Habe, Toshio Omori, Hisakazu Yamane, Hideaki Nojiri
    posted to transcription regulation for-the-review carbazole biodegradation by gcarbajosa to the group TNT on 2008-07-11 17:23:41 as ***
  • A comprehensive set of plasmids for vanillate- and xylose-inducible gene expression in Caulobacter crescentus.
    Nucleic acids research, Vol. 35, No. 20. (2007)
    by M Thanbichler, AA Iniesta, L Shapiro
    posted to vanillate transcription regulation for-the-review biotechnology biodegradation by gcarbajosa to the group TNT on 2008-07-11 17:11:04 as ***
  • The TetR family of transcriptional repressors.
    Microbiology and molecular biology reviews : MMBR, Vol. 69, No. 2. (June 2005), pp. 326-356.
    by JL Ramos, M Martínez-Bueno, AJ Molina-Henares, W Terán, K Watanabe, X Zhang, MT Gallegos, R Brennan, R Tobes
    posted to transcription review regulation for-the-review by gcarbajosa to the group TNT on 2008-07-11 16:57:48 as ***
  • Mining logic gates in prokaryotic transcriptional regulation networks
    FEBS Letters, Vol. 582, No. 8. (9 April 2008), pp. 1237-1244.
    by Rafael Silva-Rocha, Víctor de Lorenzo
    posted to transcription synthetic-biology regulation logic for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-11 16:28:34 as ***
  • Substrate-induced gene expression (SIGEX) screening of metagenome libraries.
    Nature protocols, Vol. 3, No. 7. (2008), pp. 1202-1212.
    by T Uchiyama, K Watanabe
    posted to screening for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-11 16:21:02 as **
  • Insights into environmental bioremediation by microorganisms through functional genomics and proteomics.
    Proteomics, Vol. 8, No. 4. (February 2008), pp. 874-881.
    by B Zhao, CL Poh
    posted to review proteomics for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-11 15:54:55 as **
  • Bacterial degradation of aromatic pollutants: a paradigm of metabolic versatility.
    Int Microbiol, Vol. 7, No. 3. (September 2004), pp. 173-180.
    by E Díaz
    posted to review for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-11 15:52:27 as ** along with 1 person rabu
  • In vivo drafting of single-chain antibodies for regulatory duty on the 54-promoter Pu of the TOL plasmid
    Molecular Microbiology, Vol. 60, No. 5. (June 2006), pp. 1218-1227.
    by Paola Jurado, Luis A Fernandez, Victor de Lorenzo
    posted to xylr transcription tol synthetic-biology sigma54 regulation for-the-review biodegradation by gcarbajosa to the group TNT on 2008-07-11 15:39:15 as ***
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