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Recent papers posted by members of the kdl group with tag bio

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	Multiple Graph Alignment for the Structural Analysis of Protein Active Sites [My Copy] IEEE/ACM Trans. Comput. Biol. Bioinformatics, Vol. 4, No. 2. (April 2007), pp. 310-320. by Nils Weskamp, Eyke Hullermeier, Daniel Kuhn, Gerhard Klebe posted to graph_alignment bio by lfriedl to the group kdl on 2007-06-29 21:38:32 as
	HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4309-4311. by Giovanni Montana posted to tribes bio by lfriedl to the group kdl on 2007-04-21 01:25:27 as
	Haplotype Analysis and a Novel Allele-Sharing Method Refines a Chromosome 4p Locus Linked to Bipolar Affective Disorder [My Copy] Biological Psychiatry, Vol. 61, No. 6. (15 March 2007), pp. 797-805. by Stephanie Le Hellard, Andrew J. Lee, Sarah Underwood, et al.Pippa A. Thomson, Stewart W. Morris, Helen S. Torrance, Susan M. Anderson, Richard R. Adams, Pau Navarro, Andrea Christoforou, Lorna M. Houlihan, Sevilla Detera-Wadleigh, Michael J. Owen, Philip Asherson, Walter J. Muir, Douglas H. Blackwood, Naomi R. Wray, David J. Porteous, Kathryn L. Evans posted to genetic_association bio by lfriedl to the group kdl on 2007-04-20 00:38:48 as
	Statistical analysis of domains in interacting protein pairs [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 993-1001. by M. W. Nye, Berzuini Carlo, R. Gilks, Babu M. Madan, A. Teichmann posted to bio ppi by lfriedl to the group kdl on 2007-03-13 19:55:26 as along with 5 people chad_davis wnpx neils iris_2001 phoenixzxl
	A comparison of association indices [My Copy] Animal Behaviour, Vol. 35, No. 5. (October 1987), pp. 1454-1469. by Sara J. Cairns, Steven J. Schwager posted to bio social_network_analysis by lfriedl to the group kdl on 2007-03-12 21:28:24 as
	For Yeast Protein Hubs, More Data Means More Connections [My Copy] PLoS Biology, Vol. 4, No. 10. (1 October 2006) by Richard Robinson posted to bio ppi by lfriedl to the group kdl on 2006-09-29 04:20:24 as
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted to bio ppi by lfriedl to the group kdl on 2006-09-29 04:17:51 as along with 18 people and 2 groups carlk snuppepuppan tmmurali balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz shikin s041629 pmendes mtruksa chasmand EBI-regulation GeneGo
	A direct comparison of protein interaction confidence assignment schemes [My Copy] BMC Bioinformatics, Vol. 7 (26 July 2006), 360. by Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker posted to bio ppi by lfriedl to the group kdl on 2006-09-29 04:17:06 as along with 7 people anf roys tmmurali balajis gurkanbebek IbnBio iris_2001
	Modeling interactome: scale-free or geometric? [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3508-3515. by N. Przulj, D. G. Corneil, I. Jurisica posted to bio ppi social_network_analysis by lfriedl to the group kdl on 2006-07-05 21:36:31 as along with 7 people abhishek_tiwari tomhebbron wnpx j3xucite gurkanbebek maralena ethkim
	Predicting Protein-Protein Interactions by Association Mining [My Copy] Information Systems Frontiers, Vol. 8, No. 1. (February 2006), pp. 37-47. by Max Kotlyar, Igor Jurisica posted to bio ppi by lfriedl to the group kdl on 2006-07-05 21:34:46 as
	Bridging structural biology and genomics: assessing protein interaction data with known complexes [My Copy] Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536. by A. Edwards posted to bio ppi usesmipsset by lfriedl to the group kdl on 2006-07-05 20:47:31 as along with 6 people flbarroso ubcg08l wnpx reidy ruvido wilbur
	From The Cover: A simple physical model for scaling in protein-protein interaction networks [My Copy] PNAS, Vol. 103, No. 2. (10 January 2006), pp. 311-316. by Eric J. Deeds, Orr Ashenberg, Eugene I. Shakhnovich posted to bio graph_based_analysis ppi by lfriedl to the group kdl on 2006-06-29 22:34:27 as along with 5 people phoenixzxl shuns ruvido gcalda iris_2001
	A data integration methodology for systems biology: Experimental verification [My Copy] PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307. by Daehee Hwang, Jennifer J. Smith, Deena M. Leslie, et al.Andrea D. Weston, Alistair G. Rust, Stephen Ramsey, Pedro de Atauri, Andrew F. Siegel, Hamid Bolouri, John D. Aitchison, Leroy Hood posted to bio multiple_data_sources by lfriedl to the group kdl on 2006-06-29 22:21:46 as along with 12 people and 1 group jimineep winterschlaefer Retchless tmmurali dragonrez okarsligil lyongu eweaver wnpx mbeautru GeeSharpMinor nedwards Bioinformatics
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted to bio multiple_data_sources by lfriedl to the group kdl on 2006-06-29 22:21:04 as along with 22 people and 3 groups shigepong daforerog shikin jimineep ggallone brian tmmurali dragonrez okarsligil jfr Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab Bioinformatics JJJ
	Prediction of physical protein–protein interactions [My Copy] Physical Biology, Vol. 2, No. 2. (June 2005), S1. by András Szilágyi, Vera Grimm, Adrián K. Arakaki, Jeffrey Skolnick posted to bio ppi review by lfriedl to the group kdl on 2006-06-29 22:00:09 as along with 2 people and 1 group csrocha ruvido structural_bioinformatics
	Integrated Prediction of the Helical Membrane Protein Interactome in Yeast [My Copy] Journal of Molecular Biology, Vol. 357, No. 1. (17 March 2006), pp. 339-349. by Yu Xia, Long J. Lu, Mark Gerstein posted to bio ppi usesmipsset by lfriedl to the group kdl on 2006-06-29 21:36:54 as
	Predicting protein-protein interactions using signature products. [My Copy] Bioinformatics, Vol. 21, No. 2. (15 January 2005), pp. 218-226. by S. Martin, D. Roe, J. L. Faulon posted to bio ppi usesmipsset by lfriedl to the group kdl on 2006-06-29 21:26:58 as
	Choosing negative examples for the prediction of protein-protein interactions [My Copy] BMC Bioinformatics, Vol. 7, No. Suppl 1. (2006) by Asa B. Hur, William Noble posted to bio ppi usesmipsset by lfriedl to the group kdl on 2006-06-29 21:19:41 as along with 4 people TRHvidsten balajis IbnBio wilbur
	Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. [My Copy] American journal of human genetics, Vol. 78, No. 6. (June 2006), pp. 1011-1025. by Lude Franke, Harm van Bakel, Like Fokkens, Edwin D. de Jong, Michael Egmont-Petersen, Cisca Wijmenga posted to bio ppi by lfriedl to the group kdl on 2006-06-29 21:07:20 as along with 11 people frohike eesruiz saket agonzale jfr snuppepuppan guhjy tabu samal mmt raiyar
	Filtering high-throughput protein-protein interaction data using a combination of genomic features. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by A. Patil, H. Nakamura posted to bio ppi by lfriedl to the group kdl on 2006-06-29 21:01:05 as along with 3 people abhik wnpx carlk
	Evaluation of different biological data and computational classification methods for use in protein interaction prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 3. (2006), pp. 490-500. by Yanjun Qi, Ziv Bar-Joseph, Judith Klein-Seetharaman posted to bio ppi usesmipsset by lfriedl to the group kdl on 2006-06-29 20:43:14 as along with 6 people tienholin huasha penpen926 lptolik tmmurali balajis
	GENOMICS: Defining Genes in the Genomics Era [My Copy] Science, Vol. 300, No. 5617. (11 April 2003), pp. 258-260. by Michael Snyder, Mark Gerstein posted to bio review by lfriedl to the group kdl on 2006-06-29 20:30:07 as
	Intrinsic Disorder is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes [My Copy] PLoS Computational Biology, Vol. preprint, No. 2006. (1 June 2006) by Chad Haynes, Christopher J. Oldfield, Fei Ji, et al.Niels Klitgord, Michael E. Cusick, Predrag Radivojac, Vladimir N. Uversky, Marc Vidal, Lilia M. Iakoucheva posted to bio ppi by lfriedl to the group kdl on 2006-06-29 19:20:29 as
	Exploiting indirect neighbours and topological weight to predict protein function from proteinprotein interactions [My Copy] Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1623-1630. by Chua, Hon Nian, Sung, Wing-Kin, Wong, Limsoon posted to bio ppi predict_function by lfriedl to the group kdl on 2006-06-28 18:12:25 as along with 3 people AbnerCYH jiny carlk
	Network motif identification in stochastic networks [My Copy] PNAS, Vol. 103, No. 25. (20 June 2006), pp. 9404-9409. by Rui Jiang, Zhidong Tu, Ting Chen, Fengzhu Sun posted to bio graph_based_analysis ppi by lfriedl to the group kdl on 2006-06-21 19:07:31 as along with 3 people and 1 group dlobo jaspervoskuilen wei_tang GEB
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to bio high_throughput_dataset ppi by lfriedl to the group kdl on 2006-06-20 01:10:07 as along with 31 people and 9 groups aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	Evolutionary and physiological importance of hub proteins [My Copy] PLoS Computational Biology, Vol. preprint, No. 2006. (1 June 2006) by Nizar N. Batada, Laurence D. Hurst, Mike Tyers posted to bio ppi by lfriedl to the group kdl on 2006-06-13 18:54:39 as
	Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome [My Copy] Genome Biology, Vol. 6, No. 5. (2005), R40. by Arun Ramani, Razvan Bunescu, Raymond Mooney, Edward Marcotte posted to bio ppi by lfriedl to the group kdl on 2006-05-03 22:39:59 as along with 19 people and 4 groups fesousa ggallone yaredo setar tmmurali dragonrez okarsligil ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss raiyar grahamc Complex Networks Jarman Lab Bioinformatics generif_paper
	Systematic genetic analysis with ordered arrays of yeast deletion mutants. [My Copy] Science, Vol. 294, No. 5550. (14 December 2001), pp. 2364-2368. by A. H. Tong, M. Evangelista, A. B. Parsons, et al.H. Xu, G. D. Bader, N. Pagé, M. Robinson, S. Raghibizadeh, C. W. Hogue, H. Bussey, B. Andrews, M. Tyers, C. Boone posted to bio high_throughput_dataset by lfriedl to the group kdl on 2006-05-02 20:27:47 as along with 8 people dakelley shivaram balajis opheliav nirfriedman blaine_5 ruvido carlk
	Power Laws, Scale-Free Networks and Genome Biology (Molecular Biology Intelligence Unit) [My Copy] (17 March 2006) by Eugene V. Koonin, G. Karev, Y. Wolf posted to bio graph_based_analysis by lfriedl to the group kdl on 2006-05-02 17:49:50 as along with 2 people cmmorel fishtank
	Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network [My Copy] Journal of Biology, Vol. 4, No. 2. (2005), 6. by Lan Zhang, Oliver King, Sharyl Wong, et al.Debra Goldberg, Amy Tong, Guillaume Lesage, Brenda Andrews, Howard Bussey, Charles Boone, Frederick Roth posted to bio graph_based_analysis multiple_data_sources by lfriedl to the group kdl on 2006-05-01 22:25:49 as along with 11 people colmryan marcora jjray ssb benny nirfriedman koller iris_2001 gwcarter carlk ksiek
	Predicting co-complexed protein pairs using genomic and proteomic data integration [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (16 April 2004), 38. by Lan Zhang, Sharyl Wong, Oliver King, Frederick Roth posted to bio multiple_data_sources ppi by lfriedl to the group kdl on 2006-05-01 22:21:35 as along with 4 people mpotamias reidy nedwards carlk
	Towards an Integrated Protein-Protein Interaction Network: A Relational Markov Network Approach [My Copy] Journal of Computational Biology, Vol. 13, No. 2. (March 2006), pp. 145-164. by Ariel Jaimovich, Gal Elidan, Hanah Margalit, Nir Friedman posted to bio link_prediction ppi by lfriedl to the group kdl on 2006-05-01 19:48:02 as along with 6 people anon_pl wnpx nirfriedman koller rsantana iris_2001
	Discovering molecular pathways from protein interaction and gene expression data [My Copy] Bioinformatics, Vol. 19, No. suppl_1. (3 July 2003), pp. i264-272. by E. Segal, H. Wang, D. Koller posted to bio by lfriedl to the group kdl on 2006-05-01 19:31:07 as along with 7 people yaredo jfr wnpx noano bhaddow edwardmorrissey jiny
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, JosÃ© M. PeregrÃn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted to bio high_throughput_dataset ppi by lfriedl to the group kdl on 2006-04-25 21:37:03 as along with 30 people and 4 groups aceol mpotamias paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim Paccanaro Lab EBI-regulation BioinfoCIPF SGU-CIPF
	TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics. [My Copy] Nucleic Acids Res, Vol. 32, No. 1. (2004), pp. 328-337. by H. Yu, X. Zhu, D. Greenbaum, J. Karro, M. Gerstein posted to bio graph_based_analysis by lfriedl to the group kdl on 2006-04-25 16:12:38 as along with 3 people nzm carlk IbnBio
	Genomic analysis of regulatory network dynamics reveals large topological changes. [My Copy] Nature, Vol. 431, No. 7006. (16 September 2004), pp. 308-312. by N. M. Luscombe, M. M. Babu, H. Yu, M. Snyder, S. A. Teichmann, M. Gerstein posted to bio graph_based_analysis reconstruct_pathway by lfriedl to the group kdl on 2006-04-25 16:11:29 as along with 24 people and 7 groups joseph_x_zhou kentz behindtherabbit vertikalist camster snuppepuppan hununu icases lna alexg nirfriedman dgront nickluscombe kairita comb kengg gespim koller timflutre fishtank cjeans rebeccamancy faion carlk bioNetwork_sysBio BTS-PT-AS-CS dbk-lab EBI-regulation TNT ColDyn Plantandetc
	Inferring protein interactions from phylogenetic distance matrices. [My Copy] Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2039-2045. by J. Gertz, G. Elfond, A. Shustrova, et al.M. Weisinger, M. Pellegrini, S. Cokus, B. Rothschild posted to bio ppi by lfriedl to the group kdl on 2006-04-24 22:09:06 as along with 3 people balajis wnpx ruvido
	Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching [My Copy] (1996) by M. Gribskov, N. Robinson posted to bio by lfriedl to the group kdl on 2006-04-23 18:19:09 as
	Transitive functional annotation by shortest-path analysis of gene expression data [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 20. (1 October 2002), pp. 12783-12788. by Xianghong Zhou, Ming-Chih J. Kao, Wing H. Wong posted to bio graph_based_analysis predict_function by lfriedl to the group kdl on 2006-04-10 20:20:36 as along with 4 people minostro Borelli cswinburne shivaram
	Genome-Wide Prediction of C. elegans Genetic Interactions [My Copy] Science, Vol. 311, No. 5766. (10 March 2006), pp. 1481-1484. by Weiwei Zhong, Paul W. Sternberg posted to bio multiple_data_sources ppi by lfriedl to the group kdl on 2006-04-09 23:06:20 as along with 12 people and 2 groups thegoose2 benjaminsb nedwards tharris lp2 indigoviolet xwbcn nirfriedman patrycjam patrycja_missiuro mingzhi carlk C. elegans / WormBase EisenLab
	Use of Logic Relationships to Decipher Protein Network Organization [My Copy] Science, Vol. 306, No. 5705. (24 December 2004), pp. 2246-2249. by Peter M. Bowers, Shawn J. Cokus, David Eisenberg, Todd O. Yeates posted to bio graph_based_analysis by lfriedl to the group kdl on 2006-04-09 03:42:46 as along with 4 people jperkins mdimmic opheliav wnpx
	Proteomics: Guilt-by-association goes global [My Copy] Nature, Vol. 403, No. 6770. (10 February 2000), pp. 601-603. by Stephen Oliver posted to bio ppi predict_function review by lfriedl to the group kdl on 2006-04-09 03:41:37 as
	Identification and analysis of evolutionarily cohesive functional modules in protein networks. [My Copy] Genome Res (31 January 2006) by Mónica Campillos, Christian von Mering, Lars Juhl J. Jensen, Peer Bork posted to bio clustering predict_function by lfriedl to the group kdl on 2006-04-09 03:40:00 as along with 8 people and 1 group Garamonfok balajis nirfriedman nickluscombe koller dbgoodman larsjuhljensen carlk EBI-regulation
	Correlation between gene expression profiles and protein-protein interactions within and across genomes [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2730-2738. by Nitin Bhardwaj, Hui Lu posted to bio ppi by lfriedl to the group kdl on 2006-04-09 03:38:23 as along with 2 people jperkins jjray
	An Exponential Core in the Heart of the Yeast Protein Interaction Network [My Copy] Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 421-425. by Jose B. Pereira-Leal, Benjamin Audit, Jose M. Peregrin-Alvarez, Christos A. Ouzounis posted to bio graph_based_analysis ppi social_network_analysis by lfriedl to the group kdl on 2006-04-09 03:37:21 as along with 2 people wilbur diamantis
	Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae [My Copy] Nucleic Acids Research, Vol. 32, No. 21., 6414. by Yu Chen, Dong Xu posted to bio predict_function by lfriedl to the group kdl on 2006-04-09 03:36:28 as
	Utilizing logical relationships in genomic data to decipher cellular processes. [My Copy] FEBS J, Vol. 272, No. 20. (October 2005), pp. 5110-5118. by P. M. Bowers, B. D. O'Connor, S. J. Cokus, E. Sprinzak, T. O. Yeates, D. Eisenberg posted to bio by lfriedl to the group kdl on 2006-04-09 03:35:14 as along with 1 person koller
	A Probabilistic Functional Network of Yeast Genes [My Copy] Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558. by Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward M. Marcotte posted to bio predict_function by lfriedl to the group kdl on 2006-04-09 03:33:59 as along with 20 people and 2 groups snow_dragon freesci isotelesis eesruiz aelef jiny irenas ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant kintoki balicea svdate ellakat roys dbk-lab EBI-regulation
	Changing perspectives in yeast research nearly a decade after the genome sequence. [My Copy] Genome Res, Vol. 15, No. 12. (December 2005), pp. 1611-1619. by K. Dolinski, D. Botstein posted to bio review by lfriedl to the group kdl on 2006-04-09 03:32:15 as along with 3 people nirfriedman fishtank dmc

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