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Group: Microbial-Ecology - library [344 articles]

Recent papers posted by members of the Microbial-Ecology group
  • Microbial diversity and the genetic nature of microbial species
    Nature Reviews Microbiology, Vol. 6, No. 6., pp. 431-440.
    by Mark Achtman, Michael Wagner
  • From the Cover: A latitudinal diversity gradient in planktonic marine bacteria
    Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778.
    by Jed A Fuhrman, Joshua A Steele, Ian Hewson, Michael S Schwalbach, Mark V Brown, Jessica L Green, James H Brown
  • Eukaryotic diversity in an anaerobic aquifer polluted with landfill leachate.
    Applied and environmental microbiology, Vol. 74, No. 13. (July 2008), pp. 3959-3968.
  • PCR Amplification of Microsatellites from Single Cells of Karenia brevis Preserved in Lugols Iodine Solution
    Marine Biotechnology, Vol. 10, No. 2. (March 2008), pp. 122-127.
  • Improved Methodology for Identification of Protists and Microalgae from Plankton Samples Preserved in Lugol's Iodine Solution: Combining Microscopic Analysis with Single-Cell PCR
    Appl. Environ. Microbiol., Vol. 74, No. 8. (15 April 2008), pp. 2505-2510.
    by Barbara M Auinger, Karin Pfandl, Jens Boenigk
  • Abundance and diversity of microbial life in ocean crust
    Nature, Vol. 453, No. 7195., pp. 653-656.
    by Cara M Santelli, Beth N Orcutt, Erin Banning, Wolfgang Bach, Craig L Moyer, Mitchell L Sogin, Hubert Staudigel, Katrina J Edwards
  • Life-Cycle and Genome of OtV5, a Large DNA Virus of the Pelagic Marine Unicellular Green Alga Ostreococcus tauri.
    PLoS ONE, Vol. 3 (2008), e2250.
    by Evelyne Derelle1, Conchita Ferraz, Marie-Line Escande, Sophie Eychenié, Richard Cooke, Gwenaël Piganeau1, Yves Desdevises, Laure Bellec, Hervé Moreau1, Nigel Grimsley
  • Unbiased Whole-Genome Amplification Directly From Clinical Samples
    Genome Res., Vol. 13, No. 5. (1 May 2003), pp. 954-964.
    by Seiyu Hosono, Fawad A Faruqi, Frank B Dean, Yuefen Du, Zhenyu Sun, Xiaohong Wu, Jing Du, Stephen F Kingsmore, Michael Egholm, Roger S Lasken
  • Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics
    Proceedings of the National Academy of Sciences (8 May 2008), 0711303105.
    by Annelie Pernthaler, Anne E Dekas, Titus C Brown, Shana K Goffredi, Tsegereda Embaye, Victoria J Orphan
  • Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 10. (15 May 2007), pp. 3205-3214.
    by Mircea Podar, Carl B Abulencia, Marion Walcher, Don Hutchison, Karsten Zengler, Joseph A Garcia, Trevin Holland, David Cotton, Loren Hauser, Martin Keller
  • Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations.
    Applied and environmental microbiology, Vol. 72, No. 6. (June 2006), pp. 4293-4301.
  • Microbial Biogeography: From Taxonomy to Traits
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043.
    by Jessica L Green, Brendan J Bohannan, Rachel J Whitaker
  • The Microbial Engines That Drive Earth's Biogeochemical Cycles
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1034-1039.
    by Paul G Falkowski, Tom Fenchel, Edward F Delong
    posted to microbial-ecology biogeochemistry by jdelcampo to the group Microbial-Ecology on 2008-05-23 17:25:16 as ***** along with 2 people tharris djkt
  • Microbial Ecology of Ocean Biogeochemistry: A Community Perspective
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1043-1045.
    by Suzanne L Strom
    posted to microbial-ecology marine biogeochemistry by jdelcampo to the group Microbial-Ecology on 2008-05-23 17:24:50 as **** along with 1 person djkt
  • Feasibility of transferring fluorescent in situ hybridization probes to an 18S rRNA gene phylochip and mapping of signal intensities.
    Applied and environmental microbiology, Vol. 74, No. 9. (May 2008), pp. 2814-2821.
    by K Metfies, LK Medlin
  • Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling
    FEMS Microbiology Ecology, Vol. 63, No. 2. (2008), pp. 249-260.
    by Martin Hartmann, Franco Widmer
    posted to t-rflp microbial-ecology by jdelcampo to the group Microbial-Ecology on 2008-05-22 16:53:07 as ** along with 1 person vrich
  • Rapid DNA Library Construction for Functional Genomic and Metagenomic Screening
    Appl. Environ. Microbiol., Vol. 74, No. 5. (1 March 2008), pp. 1649-1652.
    by Jonathan E Schmitz, Anu Daniel, Mattias Collin, Raymond Schuch, Vincent A Fischetti
    posted to metagenomics genomics by jdelcampo to the group Microbial-Ecology on 2008-05-22 16:45:33 as *** along with 1 person skato_toyaku
  • The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples.
    PLoS ONE, Vol. 3, No. 1. (2008)
  • MICROBIOLOGY: A Fifth Pathway of Carbon Fixation
    Science, Vol. 318, No. 5857. (14 December 2007), pp. 1732-1733.
    by Rudolf K Thauer
  • Genomes of model organisms: know thy tools
    Environmental Microbiology, Vol. 10, No. 6. (June 2008), pp. 1383-1391.
    posted to no-tag by jdelcampo to the group Microbial-Ecology on 2008-05-22 12:41:32 as **
  • From the Cover: Extreme polyploidy in a large bacterium
    Proceedings of the National Academy of Sciences, Vol. 105, No. 18. (6 May 2008), pp. 6730-6734.
    by Jennifer E Mendell, Kendall D Clements, Howard J Choat, Esther R Angert
  • Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina
    Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 2005-2010.
    by Wesley D Swingley, Min Chen, Patricia C Cheung, Amber L Conrad, Liza C Dejesa, Jicheng Hao, Barbara M Honchak, Lauren E Karbach, Ahmet Kurdoglu, Surobhi Lahiri, Stephen D Mastrian, Hideaki Miyashita, Lawrence Page, Pushpa Ramakrishna, Soichirou Satoh, Matthew W Sattley, Yuichiro Shimada, Heather L Taylor, Tatsuya Tomo, Tohru Tsuchiya, Zi T Wang, Jason Raymond, Mamoru Mimuro, Robert E Blankenship, Jeffrey W Touchman
  • Expanding Oxygen-Minimum Zones in the Tropical Oceans
    Science, Vol. 320, No. 5876. (2 May 2008), pp. 655-658.
    by Lothar Stramma, Gregory C Johnson, Janet Sprintall, Volker Mohrholz
  • Marine Polyphosphate: A Key Player in Geologic Phosphorus Sequestration
    Science, Vol. 320, No. 5876. (2 May 2008), pp. 652-655.
    by Julia Diaz, Ellery Ingall, Claudia Benitez-Nelson, David Paterson, Martin D de Jonge, Ian Mcnulty, Jay A Brandes
  • Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5555-5560.
    by Yuichi Hongoh, Vineet K Sharma, Tulika Prakash, Satoko Noda, Todd D Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Atsushi Toyoda, Masahira Hattori, Moriya Ohkuma
  • Multiple displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments
    Environmental Microbiology, Vol. 7, No. 7. (July 2005), pp. 1024-1028.
    by Juan M Gonzalez, Carmen C Portillo, Cesareo Saiz-Jimenez
  • Phylogenomics Reshuffles the Eukaryotic Supergroups
    PLoS ONE
  • Application of Combined Morphological-Molecular Approaches to the Identification of Planktonic Protists from Environmental Samples
    The Journal of Eukaryotic Microbiology, Vol. 0, No. ja. (0)
    by Joel R Duff, BALL Hope, Peter J Lavrentyev
  • Exploring Ocean Biogeochemistry by Single-Cell Microprobe Analysis of Protist Elemental Composition
    Journal of Eukaryotic Microbiology, Vol. 55, No. 3. (June 2008), pp. 151-162.
    by Benjamin S Twining, Stephen B Baines, Stefan Vogt, E de Jong, D Martin
  • A Hierarchical View of Convergent Evolution in Microbial Eukaryotes
    Journal of Eukaryotic Microbiology, Vol. 55, No. 2. (April 2008), pp. 59-68.
    by Brian S Leander
  • Functional metagenomic profiling of nine biomes
    Nature (12 March 2008)
    by Elizabeth A Dinsdale, Robert A Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A Moran, Karen E Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R Brito, Yijun Ruan, Brandon K Swan, Rick Stevens, David L Valentine, Rebecca V Thurber, Linda Wegley, Bryan A White, Forest Rohwer
  • Development of a PNA probe for the detection of the toxic dinoflagellate Takayama pulchella
    Harmful Algae, Vol. 7, No. 4. (June 2008), pp. 495-503.
    by Bangqin Huang, Jianjun Hou, Senjie Lin, Jixin Chen, Huasheng Hong
  • The ALEX CHIP--Development of a DNA chip for identification and monitoring of Alexandrium
    Harmful Algae, Vol. 7, No. 4. (June 2008), pp. 485-494.
    by Christine Gescher, Katja Metfies, Linda K Medlin
  • Molecular probe sets for the detection of toxic algae for use in sandwich hybridization formats
    J. Plankton Res., Vol. 30, No. 4. (1 April 2008), pp. 439-448.
    by Sonja Diercks, Katja Metfies, Linda K Medlin
  • notes Multivariate analyses in microbial ecology
    FEMS Microbiology Ecology, Vol. 62, No. 2. (2007), pp. 142-160.
    by Alban Ramette
    posted to stats analysis by vrich to the group Microbial-Ecology on 2008-05-07 15:20:22 as ** along with 4 people JochimsenMC jmeppley Stenuite Olaf_Ilzins
  • Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a formar raphidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics
    Phycological Research, Vol. 55, No. 3. (September 2007), pp. 185-192.
  • Water masses and biogeography of picoeukaryote assemblages in a cold hydrographically complex system
    Limnology and Oceanography, Vol. 53, No. 3. (2008), pp. 922-935.
    by Andrew K Hamilton, C Lovejoy, PE Galand, RG Ingram
  • Genetic Diversity of Parasitic Dinoflagellates in the Genus Amoebophrya and Its Relationship to Parasite Biology and Biogeography
    Journal of Eukaryotic Microbiology, Vol. 55, No. 1. (February 2008), pp. 1-8.
    by Sunju Kim, Myung GIL Park, Keun-Yong Kim, Chang-Hoon Kim, Wonho Yih, Jong SOO Park, Wayne D Coats
  • Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific.
    Environmental microbiology (18 February 2008)
    by Heike Stevens, Osvaldo Ulloa
  • A Cryptic Algal Group Unveiled: A Plastid Biosynthesis Pathway in the Oyster Parasite Perkinsus marinus.
    Molecular biology and evolution (20 March 2008)
    by Motomichi Matsuzaki, Haruko Kuroiwa, Tsuneyoshi Kuroiwa, Kiyoshi Kita, Hisayoshi Nozaki
  • Composition of freshwater small eukaryotes community: unexpected importance of potential parasites.
    Applied and environmental microbiology (21 March 2008)
    by Cécile Lepère, Isabelle Domaizon, Didier Debroas
  • Alveolins, a New Family of Cortical Proteins that Define the Protist Infrakingdom Alveolata.
    Molecular biology and evolution (21 March 2008)
    by Sven B B Gould, Wai-Hong H Tham, Alan F F Cowman, Geoffrey I I McFadden, Ross F F Waller
  • Genome evolution in cyanobacteria: The stable core and the variable shell
    Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2510-2515.
    by Tuo Shi, Paul G Falkowski
  • Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes.
    Current biology : CB, Vol. 18, No. 6. (25 March 2008), pp. 410-418.
  • Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria.
    Current biology : CB, Vol. 18, No. 6. (25 March 2008), pp. 442-448.
  • notes Widespread distribution of a unique marine protistan lineage.
    Environmental microbiology (12 March 2008)
    by Marie L L Cuvelier, Alejandra Ortiz, Eunsoo Kim, Heike Moehlig, David E E Richardson, John F F Heidelberg, John M M Archibald, Alexandra Z Z Worden
  • Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems.
    The ISME journal (27 March 2008)
    by Nof Atamna-Ismaeel, Gazalah Sabehi, Itai Sharon, Karl-Paul P Witzel, Matthias Labrenz, Klaus Jürgens, Tamar Barkay, Maayke Stomp, Jef Huisman, Oded Beja
  • Plastid-Derived Genes in the Non-Photosynthetic Alveolate Oxyrrhis marina.
    Molecular biology and evolution (2 April 2008)
    by Claudio H H Slamovits, Patrick J J Keeling
  • The small genome of an abundant coastal ocean methylotroph.
    Environmental microbiology (3 April 2008)
    by Stephen J J Giovannoni, Darin H H Hayakawa, H James J Tripp, Ulrich Stingl, Scott A A Givan, Jang-Cheon C Cho, Hyun-Myung M Oh, Joshua B B Kitner, Kevin L L Vergin, Michael S S Rappé
  • Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species.
    Proc Natl Acad Sci U S A (25 February 2008)
    by Cindy Martens, Klaas Vandepoele, Yves Van de Peer
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