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Group: Koch_Lab - with tag single-molecule [23 articles]

Recent papers posted by members of the Koch_Lab group with tag single-molecule
  • DNA overwinds when stretched
    Nature, Vol. 442, No. 7104. (12 July 2006), pp. 836-839.
    by Jeff Gore, Zev Bryant, Marcelo Nã¶llmann, Mai U Le, Nicholas R Cozzarelli, Carlos Bustamante
    posted to single-molecule magnetic dna by skoch3 to the group Koch_Lab on 2008-07-07 06:49:38 as read
  • Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters
    Nature Structural & Molecular Biology, Vol. 13, No. 3. (19 February 2006), pp. 256-263.
    by Walter J Jessen, Scott A Hoose, Jessica A Kilgore, Michael P Kladde
    posted to single-molecule remodeling pho5 chromatin by skoch3 to the group Koch_Lab on 2008-06-19 18:10:02 as ***** along with 1 person ramalldf
  • Single-Molecule Studies Reveal Dynamics of DNA Unwinding by the Ring-Shaped T7 Helicase
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1299-1309.
    by Daniel S Johnson, Lu Bai, Benjamin Y Smith, Smita S Patel, Michelle D Wang
    posted to unzipping single-molecule helicase dna biophysics by skoch3 to the group Koch_Lab on 2008-06-14 23:31:19 as read
  • A general method for manipulating DNA sequences from any organism with optical tweezers
    Nucleic Acids Research, Vol. 34, No. 2. (2006), pp. e15-e15.
    by Derek N Fuller, Gregory J Gemmen, John P Rickgauer, Aurelie Dupont, Rachel Millin, Pierre Recouvreux, Douglas E Smith
    posted to tweezers tethering single-molecule pcr optical dna by skoch3 to the group Koch_Lab on 2008-05-20 00:10:11 as ****
  • Histone Octamer Instability under Single Molecule Experiment Conditions
    J. Biol. Chem., Vol. 280, No. 20. (20 May 2005), pp. 19958-19965.
    by Cyril Claudet, Dimitar Angelov, Philippe Bouvet, Stefan Dimitrov, Jan Bednar
    posted to single-molecule native chromatin biophysics by skoch3 to the group Koch_Lab on 2008-05-15 10:10:01 as *****
  • On-site manipulation of single whole-genome DNA molecules using optical tweezers
    Applied Physics Letters, Vol. 85, No. 21. (2004), pp. 5090-5092.
    by Hidehiro Oana, Koji Kubo, Kenichi Yoshikawa, Haruyuki Atomi, Tadayuki Imanaka
    posted to tweezers single-molecule optical chromatin by skoch3 to the group Koch_Lab on 2008-05-15 05:22:37 as ***** along with 1 person hirokiS
  • Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 1. (4 January 2000), pp. 127-132.
    by Y Cui, C Bustamante
    posted to single-molecule chromatin by skoch3 to the group Koch_Lab on 2008-05-15 00:06:33 as read
  • Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules
    Science, Vol. 271, No. 5250. (9 February 1996), pp. 795-799.
    by Steven B Smith, Yujia Cui, Carlos Bustamante
    posted to worm-like wlc single-molecule overstretching freely-jointed fjc dna chain by skoch3 to the group Koch_Lab on 2008-05-07 07:57:43 as read along with 1 person phisics
  • Chromatin remodeling: insights and intrigue from single-molecule studies
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (05 November 2007), pp. 989-996.
    by Bradley R Cairns
    posted to single-molecule review remodeling chromatin by skoch3 to the group Koch_Lab on 2008-04-30 06:21:30 as ***** along with 2 people and 1 group zhlei cwbrown EisenLab
  • Single-molecule experiments in vitro and in silico.
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1144-1148.
    by M Sotomayor, K Schulten
    posted to dynamic dynamics force in-silico molecular single-molecule smd spectroscopy by skoch3 to the group Koch_Lab on 2008-03-31 16:57:09 as ***** along with 2 people hsekiguc choonpeng
  • Probing the relation between force--lifetime--and chemistry in single molecular bonds.
    Annu Rev Biophys Biomol Struct, Vol. 30 (2001), pp. 105-128.
    by E Evans
    posted to classic dynamic force single-molecule spectroscopy by skoch3 to the group Koch_Lab on 2008-03-29 21:11:34 as read along with 1 person hsekiguc
  • Visualizing single DNA-bound proteins using DNA as a scanning probe
    Nature Methods, Vol. 4, No. 12. (11 November 2007), pp. 1031-1036.
    by Maarten C Noom, Bram van den Broek, Joost van Mameren, Gijs JL Wuite
    posted to biophysics dna dynamic force optical protein single-molecule spectroscopy tweezers by skoch3 to the group Koch_Lab on 2007-12-26 22:27:17 as *****
  • Stretching of Homopolymeric RNA Reveals Single-Stranded Helices and Base-Stacking
    Physical Review Letters, Vol. 98, No. 15. (2007)
    by Yeonee Seol, Gary M Skinner, Koen Visscher, Arnaud Buhot, Avraham Halperin
    posted to spectroscopy single-molecule rna force biophysics afm by skoch3 to the group Koch_Lab on 2007-06-19 18:45:56 as **** along with 1 person awallin
  • Analysis of Kinetics in Noisy Systems: Application to Single Molecule Tethered Particle Motion
    Biophys. J., Vol. 93, No. 1. (1 July 2007), pp. 21-36.
    by F Vanzi, L Sacconi, FS Pavone
    posted to theory tethered single-molecule particle motion biophysics by skoch3 to the group Koch_Lab on 2007-06-11 05:31:47 as ** along with 1 person ssfeldman
  • Chromatin Fibers, One-at-a-time
    Journal of Molecular Biology, Vol. 331, No. 1. (1 August 2003), pp. 1-19.
    by Jordanka Zlatanova, Sanford H Leuba
    posted to techniques single-molecule review chromatin by skoch3 to the group Koch_Lab on 2007-04-25 09:47:24 as *****
  • Forced Unfolding of Coiled-Coils in Fibrinogen by Single-Molecule AFM.
    Biophys J, Vol. 92, No. 5. (1 March 2007)
    by AE Brown, RI Litvinov, DE Discher, JW Weisel
    posted to spectroscopy single-molecule force fibrinogen dynamic afm by skoch3 to the group Koch_Lab on 2007-04-24 06:40:35 as ***
  • Pulling geometry-induced errors in single molecule force spectroscopy measurements.
    Biophys J, Vol. 92, No. 9. (1 May 2007)
    by C Ke, Y Jiang, M Rivera, RL Clark, PE Marszalek
    posted to spectroscopy single-molecule force dna biophysics by skoch3 to the group Koch_Lab on 2007-04-11 21:47:53 as ***
  • DNA looping kinetics analyzed using diffusive hidden markov model.
    Biophys J, Vol. 92, No. 8. (15 April 2007)
    by JF Beausang, C Zurla, C Manzo, D Dunlap, L Finzi, PC Nelson
    posted to tethered single-molecule particle motion microspheres markov looping hidden fluctuation dna brownian biophysics beads by skoch3 to the group Koch_Lab on 2007-03-29 21:08:22 as read
  • Single Molecule Energetics of F1-ATPase Motor
    Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1806-1812.
    by Eiro Muneyuki, Takahiro Watanabe-Nakayama, Tetsuya Suzuki, Masasuke Yoshida, Takayuki Nishizaka, Hiroyuki Noji
    posted to atpase single-molecule by skoch3 to the group Koch_Lab on 2007-02-20 06:29:34 as ***
  • Multi-Nanopore Force Spectroscopy for DNA Analysis
    Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1632-1637.
    by Carolina Tropini, Andre Marziali
    posted to biophysics dna force nanopore sensor single-molecule spectroscopy by skoch3 to the group Koch_Lab on 2007-02-20 05:46:22 as ***
  • A micromachined DNA manipulation platform for the stretching and rotation of a single DNA molecule The preliminary results of the current paper were presented at the IEEE 17th International MEMS Conference (IEEE MEMS 2004), Maastricht, Netherlands, 25–29 Jan. 2004.
    Journal of Micromechanics and Microengineering, Vol. 15, No. 1. (2005), pp. 109-117.
    by Chi H Chiou, Gwo B Lee
    posted to beads biomems biophysics dna force magnetic mems microspheres single-molecule by skoch3 to the group Koch_Lab on 2007-02-14 06:59:54 as ***
  • Dynamic force spectroscopy of protein-DNA interactions by unzipping DNA.
    Phys Rev Lett, Vol. 91, No. 2. (11 July 2003)
    by SJ Koch, MD Wang
    posted to unzipping ufapa spectroscopy single-molecule protein force dynamic dna dfs by skoch3 to the group Koch_Lab on 2007-02-03 09:00:41 as read along with 1 person TheLarry
  • Probing protein-DNA interactions by unzipping a single DNA double helix.
    Biophys J, Vol. 83, No. 2. (August 2002), pp. 1098-1105.
    by SJ Koch, A Shundrovsky, BC Jantzen, MD Wang
    posted to unzipping ufapa single-molecule protein mapping genomics dna by skoch3 to the group Koch_Lab on 2007-02-03 08:58:59 as read
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