Group: Plantandetc - with tag tfs [73 articles] Export Sort

Recent papers posted by members of the Plantandetc group with tag tfs

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	Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling [My Copy] The Plant Journal, Vol. 50, No. 4. (May 2007), pp. 660-677. by Stracke, Ralf, Ishihara, et al. Hirofumi, Huep, Gunnar, Barsch, Aiko, Mehrtens, Frank, Niehaus, Karsten, Weisshaar, Bernd posted to tfs myb flavonoid arabidopsis by kengg to the group Plantandetc on 2007-08-02 21:41:20 as along with 1 person tux2000
	MYC2 Differentially Modulates Diverse Jasmonate-Dependent Functions in Arabidopsis. [My Copy] Plant Cell (6 July 2007) by Bruno Dombrecht, Gang Ping P. Xue, Susan J J. Sprague, et al.John A A. Kirkegaard, John J J. Ross, James B B. Reid, Gary P P. Fitt, Nasser Sewelam, Peer M M. Schenk, John M M. Manners, Kemal Kazan posted to tfs bhlh arabidopsis by kengg to the group Plantandetc on 2007-07-31 14:04:37 as along with 1 person bjbecerra
	Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches. [My Copy] Genome Res, Vol. 17, No. 6. (June 2007), pp. 807-817. by V. X. Jin, H. O'geen, S. Iyengar, R. Green, P. J. Farnham posted to tfs genome-wide bioinformatics by kengg to the group Plantandetc on 2007-07-28 10:19:54 as along with 3 people cjeans ghattem kmdaily
	Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes [My Copy] Science, Vol. 290, No. 5499. (15 December 2000), pp. 2105-2110. by J. L. Riechmann, J. Heard, G. Martin, et al.L. Reuber, -Z, Jiang, J. Keddie, L. Adam, O. Pineda, O. J. Ratcliffe, R. R. Samaha, R. Creelman, M. Pilgrim, P. Broun, J. Z. Zhang, D. Ghandehari, B. K. Sherman, -L posted to tfs rna network genome-wide arabidopsis by kengg to the group Plantandetc on 2007-07-24 21:00:56 as along with 6 people and 1 group mlog megraw tny nickluscombe Hummel hplatero EBI-regulation
	A core transcriptional network for early mesoderm development in Drosophila melanogaster [My Copy] Genes & Development, Vol. 21, No. 4. (15 February 2007), pp. 436-449. by Thomas Sandmann, Charles Girardot, Marc Brehme, Waraporn Tongprasit, Viktor Stolc, Eileen E. M. Furlong posted to tfs network drosophila chip-chip by kengg to the group Plantandetc on 2007-07-20 03:09:55 as along with 6 people and 2 groups lp2 daveGerrard brant dpollard gsrats roys BergmanLab EisenLab
	Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function. [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (6 April 2007) by Yili Chen, Thomas W W. Blackwell, Ji Chen, Jing Gao, Angel W W. Lee, David J J. States posted to tfs network chip bioinformatics by kengg to the group Plantandetc on 2007-07-20 03:07:26 as along with 1 person and 1 group zwang Bioinformatics
	Genome-wide analysis of menin binding provides insights into MEN1 tumorigenesis. [My Copy] PLoS Genet, Vol. 2, No. 4. (April 2006) by P. C. Scacheri, S. Davis, D. T. Odom, et al.G. E. Crawford, S. Perkins, M. J. Halawi, S. K. Agarwal, S. J. Marx, A. M. Spiegel, P. S. Meltzer, F. S. Collins posted to tfs genome-wide chip by kengg to the group Plantandetc on 2007-07-18 09:10:08 as
	Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets. [My Copy] Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2516-2522. by S. Pyne, B. Futcher, S. Skiena posted to tfs chip bioinformatics by kengg to the group Plantandetc on 2007-07-18 03:10:36 as along with 1 person jfr
	A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (June 2005) by W. Li, C. A. Meyer, X. S. Liu posted to tfs chip bioinformatics by kengg to the group Plantandetc on 2007-07-17 03:18:48 as
	Integrating quantitative information from ChIP-chip experiments into motif finding. [My Copy] Biostatistics (28 May 2007) by Heejung Shim, Sündüz Keles posted to tfs chip bioinformatics by kengg to the group Plantandetc on 2007-07-17 03:14:25 as along with 5 people sebastien_vigneau bryankr kt nklee maximilianh
	Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. [My Copy] Nature biotechnology, Vol. 16, No. 10. (October 1998), pp. 939-945. by F. P. Roth, J. D. Hughes, P. W. Estep, G. M. Church posted to tfs genome-wide bioinformatics by kengg to the group Plantandetc on 2007-07-16 02:55:36 as along with 4 people Dulce wowalz dquest isimpson
	Chromatin organization and cell fate switch respond to positional information in Arabidopsis [My Copy] Nature (18 December 2005) by Silvia Costa, Peter Shaw posted to trichome tfs root arabidopsis by kengg to the group Plantandetc on 2007-07-15 01:39:59 as along with 1 person braingrind
	A chromatin link that couples cell division to root epidermis patterning in Arabidopsis [My Copy] Nature (22 April 2007) by Elena Caro, Mar M. Castellano, Crisanto Gutierrez posted to tfs root arabidopsis by kengg to the group Plantandetc on 2007-07-15 01:36:37 as
	Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics. [My Copy] J Biol Chem, Vol. 280, No. 27. (8 July 2005), pp. 25590-25595. by M. Y. Hirai, M. Klein, Y. Fujikawa, et al.M. Yano, D. B. Goodenowe, Y. Yamazaki, S. Kanaya, Y. Nakamura, M. Kitayama, H. Suzuki, N. Sakurai, D. Shibata, J. Tokuhisa, M. Reichelt, J. Gershenzon, J. Papenbrock, K. Saito posted to tfs network metabolite arabidopsis by kengg to the group Plantandetc on 2007-07-14 16:14:37 as
	A bHLH regulatory gene in the common morning glory, Ipomoea purpurea, controls anthocyanin biosynthesis in flowers, proanthocyanidin and phytomelanin pigmentation in seeds, and seed trichome formation [My Copy] The Plant Journal, Vol. 49, No. 4. (February 2007), pp. 641-654. by Park, Kyeung-Il, Ishikawa, et al. Naoko, Morita, Yasumasa, Choi, Jeong-Doo, Hoshino, Atsushi, Iida, Shigeru posted to tfs metabolite flavonoid by kengg to the group Plantandetc on 2007-07-14 16:11:05 as
	PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis [My Copy] The Plant Journal, Vol. 49, No. 6. (March 2007), pp. 981-994. by Shin, Jieun, Park, Eunae, Choi, Giltsu posted to tfs metabolite arabidopsis by kengg to the group Plantandetc on 2007-07-14 16:09:26 as
	The homeobox gene GLABRA2 is required for position-dependent cell differentiation in the root epidermis of Arabidopsis thaliana. [My Copy] Development, Vol. 122, No. 4. (April 1996), pp. 1253-1260. by J. D. Masucci, W. G. Rerie, D. R. Foreman, et al.M. Zhang, M. E. Galway, M. D. Marks, J. W. Schiefelbein posted to tfs root arabidopsis by kengg to the group Plantandetc on 2007-07-14 10:35:46 as
	The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis. [My Copy] Genes Dev, Vol. 8, No. 12. (15 June 1994), pp. 1388-1399. by W. G. Rerie, K. A. Feldmann, M. D. Marks posted to trichome tfs root arabidopsis by kengg to the group Plantandetc on 2007-07-14 10:35:05 as
	Identification of plant promoter constituents by analysis of local distribution of short sequences [My Copy] BMC Genomics, Vol. 8, No. 1. (08 March 2007), 67. by Yoshiharu Yamamoto, Hiroyuki Ichida, Minami Matsui, et al.Junichi Obokata, Tetsuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe posted to tfs network bioinformatics arabidopsis by kengg to the group Plantandetc on 2007-06-27 14:39:31 as along with 6 people dandaman xwbcn saru byy Jporci natstreet
	An ACT-like Domain Participates in the Dimerization of Several Plant Basic-helix-loop-helix Transcription Factors [My Copy] J. Biol. Chem., Vol. 281, No. 39. (29 September 2006), pp. 28964-28974. by Antje Feller, Marcela J. Hernandez, Erich Grotewold posted to tfs bhlh by kengg to the group Plantandetc on 2007-06-18 02:20:30 as
	Termination of asymmetric cell division and differentiation of stomata [My Copy] Nature (20 December 2006) by Lynn J. Pillitteri, Daniel B. Sloan, Naomi L. Bogenschutz, Keiko U. Torii posted to tfs stomata bhlh arabidopsis by kengg to the group Plantandetc on 2007-05-09 09:39:53 as
	A chromatin-mediated mechanism for specification of conditional transcription factor targets [My Copy] Nat Genet, Vol. 38, No. 12. (12 December 2006), pp. 1446-1451. by Michael J. Buck, Jason D. Lieb posted to tfs chromatin by kengg to the group Plantandetc on 2007-05-03 22:50:23 as along with 3 people and 1 group roys nickluscombe olympos EBI-regulation
	An Evolutionarily Conserved Mechanism Delimiting SHR Movement Defines a Single Layer of Endodermis in Plants [My Copy] Science, Vol. 316, No. 5823. (20 April 2007), pp. 421-425. by Hongchang Cui, Mitchell P. Levesque, Teva Vernoux, et al.Jee W. Jung, Alice J. Paquette, Kimberly L. Gallagher, Jean Y. Wang, Ikram Blilou, Ben Scheres, Philip N. Benfey posted to tfs root arabidopsis by kengg to the group Plantandetc on 2007-04-19 23:19:26 as
	The ENHANCER OF TRY AND CPC1 gene acts redundantly with TRIPTYCHON and CAPRICE in trichome and root hair cell patterning in Arabidopsis. [My Copy] Dev Biol, Vol. 268, No. 2. (15 April 2004), pp. 506-513. by V. Kirik, M. Simon, M. Huelskamp, J. Schiefelbein posted to trichome tfs arabidopsis by kengg to the group Plantandetc on 2007-03-22 18:34:29 as
	Robustness can evolve gradually in complex regulatory gene networks with varying topology. [My Copy] PLoS computational biology, Vol. 3, No. 2. (2 February 2007), e15. by S. Ciliberti, O. C. Martin, A. Wagner posted to bioinformatics network tfs by kengg to the group Plantandetc on 2007-03-15 20:24:57 as along with 17 people and 3 groups chica biomcgary kaarsinogen eldan ccots indigoviolet emilyhare entropy nickluscombe aswin dolhuis timflutre grahamc shigepong kynn carneiro phoenixzxl EisenLab EBI-regulation SNE
	The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana [My Copy] PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e11. by Dirk Walther, Roman Brunnemann, Joachim Selbig posted to arabidopsis network tfs by kengg to the group Plantandetc on 2007-03-12 19:00:12 as along with 7 people and 1 group mingzhi JustinCrocker indigoviolet saru braingrind byy Borelli EisenLab
	R1R2R3-Myb proteins positively regulate cytokinesis through activation of KNOLLE transcription in Arabidopsis thaliana. [My Copy] Development (7 February 2007) by Nozomi Haga, Kiichi Kato, Masatake Murase, et al.Satoshi Araki, Minoru Kubo, Taku Demura, Kaoru Suzuki, Isabel Müller, Ute Voß, Gerd Jürgens, Masaki Ito posted to arabidopsis myb tfs by kengg to the group Plantandetc on 2007-02-20 14:26:45 as
	Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes. [My Copy] Plant Mol Biol, Vol. 57, No. 2. (January 2005), pp. 155-171. by U. Hartmann, M. Sagasser, F. Mehrtens, R. Stracke, B. Weisshaar posted to arabidopsis flavonoid myb tfs by kengg to the group Plantandetc on 2007-02-19 16:58:08 as
	A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. [My Copy] PLoS Pathog, Vol. 2, No. 11. (November 2006) by D. Wang, N. Amornsiripanitch, X. Dong posted to tfs network disease arabidopsis by kengg to the group Plantandetc on 2007-02-09 13:42:00 as along with 2 people udivi saru
	Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. [My Copy] Cell, Vol. 116, No. 4. (20 February 2004), pp. 499-509. by S. Cawley, S. Bekiranov, H. H. Ng, et al.P. Kapranov, E. A. Sekinger, D. Kampa, A. Piccolboni, V. Sementchenko, J. Cheng, A. J. Williams, R. Wheeler, B. Wong, J. Drenkow, M. Yamanaka, S. Patel, S. Brubaker, H. Tammana, G. Helt, K. Struhl, T. R. Gingeras posted to tfs network genome-wide chip bioinformatics by kengg to the group Plantandetc on 2007-01-23 15:50:52 as along with 5 people evaf mtagaya olympos brant bertelsen
	Multiple testing methods for ChIP-Chip high density oligonucleotide array data. [My Copy] J Comput Biol, Vol. 13, No. 3. (April 2006), pp. 579-613. by S. Keleş, M. J. van der Laan, S. Dudoit, S. E. Cawley posted to tfs network chip bioinformatics by kengg to the group Plantandetc on 2007-01-23 15:44:05 as along with 1 person humburg
	Dissecting oct3/4-regulated gene networks in embryonic stem cells by expression profiling. [My Copy] PLoS ONE, Vol. 1 (2006) by R. Matoba, H. Niwa, S. Masui, et al.S. Ohtsuka, M. G. Carter, A. A. Sharov, M. S. Ko posted to tfs network genome-wide chromatin by kengg to the group Plantandetc on 2007-01-18 20:27:28 as along with 1 person sebastien_vigneau
	Control of GL2 expression in Arabidopsis leaves and trichomes. [My Copy] Development, Vol. 125, No. 7. (April 1998), pp. 1161-1171. by D. B. Szymanski, R. A. Jilk, S. M. Pollock, M. D. Marks posted to trichome tfs arabidopsis by kengg to the group Plantandetc on 2007-01-16 14:29:43 as
	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis. [My Copy] Plant Cell Physiol, Vol. 46, No. 6. (June 2005), pp. 817-826. by Y. Koshino-Kimura, T. Wada, T. Tachibana, R. Tsugeki, S. Ishiguro, K. Okada posted to tfs root arabidopsis by kengg to the group Plantandetc on 2007-01-16 14:25:26 as
	Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism. [My Copy] Plant Physiol, Vol. 143, No. 1. (January 2007), pp. 156-171. by R. Müller, M. Morant, H. Jarmer, L. Nilsson, T. H. Nielsen posted to tfs network arabidopsis by kengg to the group Plantandetc on 2007-01-13 03:30:44 as along with 2 people sanchezbuelna byy
	Identification of novel regulatory modules in dicot plants using expression data and comparative genomics [My Copy] Genome Biology, Vol. 7 (07 November 2006), R103. by Klaas Vandepoele, Tineke Casneuf, Yves Van de Peer posted to tfs network bioinformatics arabidopsis by kengg to the group Plantandetc on 2007-01-13 03:26:55 as along with 2 people druvus plofje
	AthaMap web tools for database-assisted identification of combinatorial cis-regulatory elements and the display of highly conserved transcription factor binding sites in Arabidopsis thaliana. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by N. O. Steffens, C. Galuschka, M. Schindler, L. Bülow, R. Hehl posted to tfs bioinformatics arabidopsis by kengg to the group Plantandetc on 2007-01-13 03:14:44 as along with 1 person natstreet
	Signal Transduction and Transcriptional Regulation of Plant Defence Responses [My Copy] Journal of Phytopathology, Vol. 154, No. 2. (February 2006), pp. 65-74. by B. L. Jalali, S. Bhargava, A. Kamble posted to tfs disease arabidopsis by kengg to the group Plantandetc on 2007-01-12 19:40:29 as
	Nuclear import of the transcription factor SHOOT MERISTEMLESS depends on heterodimerization with BLH proteins expressed in discrete sub-domains of the shoot apical meristem of Arabidopsis thaliana [My Copy] Nucleic Acids Research, Vol. 34, No. 4. (2006), pp. 1281-1292. by Melanie Cole, Carolin Nolte, Wolfgang Werr posted to tfs flowering arabidopsis by kengg to the group Plantandetc on 2007-01-11 15:10:19 as
	Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. [My Copy] Mol Biol Evol, Vol. 23, No. 2. (February 2006), pp. 469-478. by J. M. Duarte, L. Cui, P. K. Wall, et al.Q. Zhang, X. Zhang, J. Leebens-Mack, H. Ma, N. Altman, C. W. dePamphilis posted to tfs arabidopsis by kengg to the group Plantandetc on 2007-01-11 15:04:47 as along with 1 person azazello
	Core transcriptional regulatory circuitry in human hepatocytes. [My Copy] Mol Syst Biol, Vol. 2 (2006) by D. T. Odom, R. D. Dowell, E. S. Jacobsen, et al.L. Nekludova, P. A. Rolfe, T. W. Danford, D. K. Gifford, E. Fraenkel, G. I. Bell, R. A. Young posted to tfs network microarray chip by kengg to the group Plantandetc on 2007-01-09 20:49:04 as along with 6 people arthegall Schmidtc cconboy koller jdiggans gdb
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to tfs network by kengg to the group Plantandetc on 2007-01-09 20:43:57 as along with 32 people and 7 groups chasmand kmdaily arthegall viren4388 daveGerrard Dulce talponer wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe gespim koller lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Genetics-of-Gambling BergmanLab
	The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. [My Copy] Science (New York, N.Y.), Vol. 313, No. 5795. (29 September 2006), pp. 1929-1935. by Justin Lamb, Emily D. Crawford, David Peck, et al.Joshua W. Modell, Irene C. Blat, Matthew J. Wrobel, Jim Lerner, Jean-Philippe P. Brunet, Aravind Subramanian, Kenneth N. Ross, Michael Reich, Haley Hieronymus, Guo Wei, Scott A. Armstrong, Stephen J. Haggarty, Paul A. Clemons, Ru Wei, Steven A. Carr, Eric S. Lander, Todd R. Golub posted to tfs small-molecule network bioinformatics by kengg to the group Plantandetc on 2007-01-09 14:15:01 as along with 30 people and 8 groups ilyashl gbloeb zufar ipark-kaist bertelsen mingzhi AbnerCYH Dulcinea dansullivanblk BragilMassoud guhjy kuhn jfr yas balajis marcius lhonigberg neveaire ealloza koller mlovell jdiggans ezra jeremymiller frohike massivemayhem lp2 pablomendes jdiezperezj askrajiv Biostatistics Computational-Genomics Bioinformatics Neuroscience T_lab BioinfoCIPF SGU-CIPF GeschwindLab
	ModuleFinder and CoReg: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants [My Copy] Plant Methods, Vol. 2 (11 April 2006), 8. by Kathryn E. Holt, Harvey A. Millar, James Whelan posted to bioinformatics tfs by kengg to the group Plantandetc on 2007-01-08 17:07:53 as along with 2 people dandaman natstreet
	Structure and evolution of transcriptional regulatory networks. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 283-291. by M. M. Babu, N. M. Luscombe, L. Aravind, M. Gerstein, S. A. Teichmann posted to review tfs by kengg to the group Plantandetc on 2007-01-08 15:31:35 as along with 6 people and 1 group kaarsinogen tny koller tvdbulck cjeans karfunkel Bioinformatics
	Logic functions of the genomic cis-regulatory code. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4954-4959. by S. Istrail, E. H. Davidson posted to tfs by kengg to the group Plantandetc on 2007-01-08 15:29:57 as along with 1 person and 1 group eskay Bioinformatics
	Nitrogen deficiency enhances expression of specific MYB and bHLH transcription factors and accumulation of end products in the flavonoid pathway. [My Copy] Planta (20 October 2006) by Unni S. Lea, Rune Slimestad, Pål Smedvig, Cathrine Lillo posted to tfs myb metabolite flavonoid bhlh by kengg to the group Plantandetc on 2006-12-14 21:42:35 as
	TT8 controls its own expression in a feedback regulation involving TTG1 and homologous MYB and bHLH factors, allowing a strong and cell-specific accumulation of flavonoids in Arabidopsis thaliana [My Copy] The Plant Journal, Vol. 46, No. 5. (June 2006), pp. 768-779. by Antoine Baudry, Michel Caboche, Loic Lepiniec posted to arabidopsis flavonoid tfs by kengg to the group Plantandetc on 2006-11-28 14:29:50 as
	A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 13. (29 March 2005), pp. 4908-4912. by J. Hackbusch, K. Richter, J. Müller, F. Salamini, J. F. Uhrig posted to arabidopsis homeodomain tfs by kengg to the group Plantandetc on 2006-11-21 15:12:42 as
	Characterization of the Class IV Homeodomain-Leucine Zipper Gene Family in Arabidopsis [My Copy] Plant Physiol., Vol. 141, No. 4. (1 August 2006), pp. 1363-1375. by Miyuki Nakamura, Hiroshi Katsumata, Mitsutomo Abe, et al.Naoto Yabe, Yoshibumi Komeda, Kotaro T. Yamamoto, Taku Takahashi posted to arabidopsis homeodomain tfs trichome by kengg to the group Plantandetc on 2006-11-16 21:50:26 as along with 1 person braingrind

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