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Group: MathBio - library [795 articles]

Recent papers posted by members of the MathBio group
  • Having a BLAST with bioinformatics (and avoiding BLASTphemy).
    Genome Biol, Vol. 2, No. 10. (2001)
    by A Pertsemlidis, JW Fondon
    posted to bioinformatics genomics by shantanu to the group MathBio on 2007-10-18 17:42:00 as ***** along with 8 people and 1 group karbak ziquje prtmht textoris cjeans sujaikumar scottstensland hpaces Bioinformatics
  • Molecular Dynamic Simulations of Cisplatin- and Oxaliplatin-d(GG) Intrastand Cross-links Reveal Differences in their Conformational Dynamics.
    J Mol Biol (23 August 2007)
    by Shantanu Sharma, Peng Gong, Brenda Temple, Debadeep Bhattacharyya, Nikolay V V Dokholyan, Stephen G G Chaney
    posted to anticancer cancer cisplatin dna_structure drug oxaliplatin publications by shantanu to the group MathBio on 2007-09-30 18:06:41 as ***** along with 3 groups structural_bioinformatics Bioinformatics Computational-Neurobiology
  • Minimizing Transfer Times in Public Transit Network with Genetic Algorithm
    Transportation Research Record, Vol. 1971 (2006), pp. 74-79.
    by Fabian Cevallos, Fang Zhao
    posted to public-transport optimization msc-math-thesis by aitter to the group MathBio on 2007-08-17 00:42:13 as ***** along with 2 groups Numerics Optimization
  • Protein folding: Then and now.
    Arch Biochem Biophys (8 June 2007)
    by Yiwen Chen, Feng Ding, Huifen Nie, Adrian W W Serohijos, Shantanu Sharma, Kyle C C Wilcox, Shuangye Yin, Nikolay V V Dokholyan
    posted to publications protein_folding by shantanu to the group MathBio on 2007-07-02 01:12:30 as ***** along with 1 person and 7 groups choonpeng structural_bioinformatics Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • The path of DNA in the kinetochore.
    Curr Biol, Vol. 16, No. 8. (18 April 2006)
    by K Bloom, S Sharma, NV Dokholyan
    posted to publications chromatin centromere by shantanu to the group MathBio on 2007-05-05 17:46:09 as ***** along with 7 groups structural_bioinformatics Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • iFold: a platform for interactive folding simulations of proteins.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2693-2694.
    by S Sharma, F Ding, H Nie, D Watson, A Unnithan, J Lopp, D Pozefsky, NV Dokholyan
    posted to simulation publications protein_folding by shantanu to the group MathBio on 2007-04-26 00:50:16 as ***** along with 1 person and 7 groups plofje structural_bioinformatics Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Multiscale Modeling of Nucleosome Dynamics
    Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1457-1470.
    by Shantanu Sharma, Feng Ding, Nikolay V Dokholyan
    posted to simulation publications nucleosome chromatin by shantanu to the group MathBio on 2007-04-26 00:49:03 as ***** along with 4 people and 8 groups aalibes choonpeng skoch3 phisics structural_bioinformatics Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology Koch_Lab
  • Deiodinases: implications of the local control of thyroid hormone action.
    J Clin Invest, Vol. 116, No. 10. (October 2006), pp. 2571-2579.
    by AC Bianco, BW Kim
    posted to clinical-thyroidology critical-care by jwdietrich to the group MathBio on 2006-12-06 00:37:44 as ***** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • An Approximate Minimum Degree Ordering Algorithm
    SIAM J. Matrix Anal. Appl., Vol. 17, No. 4. (October 1996), pp. 886-905.
    by Patrick R Amestoy, Timothy A Davis, Iain S Duff
    posted to bsc-math-thesis numerics optimization by aitter to the group MathBio on 2006-08-10 22:48:45 as ***** along with 2 groups Numerics Optimization
  • The Multifrontal Solution of Indefinite Sparse Symmetric Linear
    ACM Trans. Math. Softw., Vol. 9, No. 3. (September 1983), pp. 302-325.
    by IS Duff, JK Reid
    posted to bsc-math-thesis numerics optimization by aitter to the group MathBio on 2006-08-03 12:04:40 as ***** along with 2 groups Numerics Optimization
  • A computational view of interior-point methods for linear programming
    No. DUT-TWI-94-73. (1996), pp. 103-144.
    by Jacek Gondzio, Tamás Terlaky
    posted to bsc-math-thesis ipm lp optimization by aitter to the group MathBio on 2006-07-30 18:05:45 as ***** along with 2 groups Numerics Optimization
  • Why is the number of DNA bases 4?
    Bull Math Biol, Vol. 68, No. 3. (April 2006), pp. 727-733.
    by B Deng
    posted to biomedical-cybernetics biomedizinische-kybernetik cybernetics kybernetik by jwdietrich to the group MathBio on 2006-07-01 08:19:42 as ***** along with 3 people and 5 groups ataheri madhadron cudmore plant-development Cybernetics APprecision Biomedical_Cybernetics AQUA-FONTIS-Study
  • Control Theory : Multivariable & Nonlinear Methods
    (30 March 2000)
    by Torkel Glad
    posted to biomedical-cybernetics biomedizinische-kybernetik control-theory cybernetics kybernetik systems-biology by jwdietrich to the group MathBio on 2006-06-17 08:30:44 as ***** along with 1 person and 3 groups per_rutquist Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Prinzipien der Medizin. Eine Übersicht ihrer Grundlagen und Methoden
    (22 June 1998)
    by Rudolf Gross, Markus Löffler
    posted to theorie_der_medizin by jwdietrich to the group MathBio on 2006-06-15 10:13:30 as ***** along with 1 person and 3 groups lebaugh Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Structure alignment via Delaunay tetrahedralization.
    Proteins (26 April 2005)
    by Jeffrey Roach, Shantanu Sharma, Maryna Kapustina, Charles W W Carter
    posted to structure_alignment publications by shantanu to the group MathBio on 2006-01-25 04:52:11 as ***** along with 3 people and 7 groups BragilMassoud ana barry structural_bioinformatics Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Five new families with resistance to thyroid hormone not caused by mutations in the thyroid hormone receptor beta gene.
    J Clin Endocrinol Metab, Vol. 84, No. 11. (November 1999), pp. 3919-3928.
    by J Pohlenz, RE Weiss, PE Macchia, S Pannain, IT Lau, H Ho, S Refetoff
    posted to endocrinology clinical-thyroidology by jwdietrich to the group MathBio on 2007-08-26 22:17:45 as **** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Resistance to thyroid hormone caused by two mutant thyroid hormone receptors beta, R243Q and R243W, with marked impairment of function that cannot be explained by altered in vitro 3,5,3'-triiodothyroinine binding affinity.
    J Clin Endocrinol Metab, Vol. 82, No. 5. (May 1997), pp. 1608-1614.
    by H Yagi, J Pohlenz, Y Hayashi, A Sakurai, S Refetoff
    posted to endocrinology clinical-thyroidology by jwdietrich to the group MathBio on 2007-08-26 22:17:27 as **** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Learning kernels from biological networks by maximizing entropy.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by K Tsuda, WS Noble
    posted to diktyology cybernetics biomedical-cybernetics by jwdietrich to the group MathBio on 2007-08-04 15:03:30 as **** along with 4 people and 3 groups carlk jccaicedo bioinfo girschick Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Computation and brain processes, with special reference to neuroendocrine systems.
    Acta Biomed, Vol. 78 Suppl 1 (2007), pp. 67-83.
    by R Toni, G Spaletta, CD Casa, S Ravera, G Sandri
    posted to endocrinology cybernetics biomedical-cybernetics by jwdietrich to the group MathBio on 2007-06-06 19:29:51 as **** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Signal transduction network motifs and biological memory
    Journal of Theoretical Biology, Vol. 246, No. 4. (21 June 2007), pp. 755-761.
    by Zhangang Han, Thomas M Vondriska, Ling Yang, Robb, James N Weiss, Zhilin Qu
    posted to systems-biology diktyology cybernetics biomedical-cybernetics by jwdietrich to the group MathBio on 2007-05-15 20:37:17 as **** along with 1 person and 3 groups jjray Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Towards systemic theories in biological psychiatry.
    Pharmacopsychiatry, Vol. 39 Suppl 1 (February 2006)
    by W Bender, M Albus, HJ Möller, F Tretter
    posted to biomedical-cybernetics cybernetics by jwdietrich to the group MathBio on 2006-09-26 19:09:47 as **** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Treatment of Childhood Schizophrenia Utilizing LSD and Psilocybin
    MAPS, Vol. 7, No. 3. (1997)
    posted to psychology schizophrenia by aitter to the group MathBio on 2006-08-16 14:52:26 as **** along with 2 groups Numerics Optimization
  • Minimum Degree Reordering Algorithms: A Tutorial
    (2006)
    by Stephen Ingram
    posted to bsc-math-thesis numerics optimization by aitter to the group MathBio on 2006-08-10 22:58:24 as **** along with 2 groups Numerics Optimization
  • Preconditioning Indefinite Systems in Interior Point Methods for Optimization
    Comput. Optim. Appl., Vol. 28, No. 2. (July 2004), pp. 149-171.
    by Luca Bergamaschi, Jacek Gondzio, Giovanni Zilli
    posted to bsc-math-thesis ipm lp numerics optimization by aitter to the group MathBio on 2006-08-10 21:31:59 as **** along with 2 groups Numerics Optimization
  • Cybernetic principles in the systematic concept of hypothalamic feeding control.
    Eur J Endocrinol, Vol. 154, No. 2. (February 2006), pp. 167-173.
    by O Fricke, G Lehmkuhl, DW Pfaff
    posted to biomedical-cybernetics by jwdietrich to the group MathBio on 2006-08-06 10:27:22 as **** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • On the equivalence of the simplex methods and a multiplier-alike method for linear programming
    Journal of Optimization Theory and Applications, Vol. 113, No. 3. (2002), pp. 487-512.
    by TS Chang, J Adachi, X Wang, TR Chen
    posted to bsc-math-thesis ipm lp optimization simplex by aitter to the group MathBio on 2006-07-30 16:34:12 as **** along with 2 groups Numerics Optimization
  • How good is the simplex algorithm?
    Vol. III (1972), pp. 159-175.
    by Victor Klee, George J Minty
    edited by O Shisha
    posted to bsc-math-thesis lp optimization by aitter to the group MathBio on 2006-07-29 21:30:32 as **** along with 2 groups Numerics Optimization
  • Foundations of Systems Biology
    (15 October 2001)
    posted to biomedical-cybernetics cybernetics systems-biology by jwdietrich to the group MathBio on 2006-06-15 10:08:02 as **** along with 3 people and 4 groups petermilner wnpx maren Cybernetics DSTO-CAS Biomedical_Cybernetics AQUA-FONTIS-Study
  • Histone acetylation in chromatin structure and transcription
    Nature, Vol. 389, No. 6649. (1997), pp. 349-352.
    by Michael Grunstein
    posted to histone transcription by shantanu to the group MathBio on 2006-01-31 21:44:13 as **** along with 1 person and 7 groups olympos structural_bioinformatics Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Automatic 3D Protein Structure Classification without Structural Alignment
    Journal of Computational Biology, Vol. 12, No. 9. (2005), pp. 1221-1241.
    by Zeyar Aung, Kian-Lee Tan
    posted to protein_structure by shantanu to the group MathBio on 2006-01-28 07:29:58 as **** along with 2 people and 7 groups ana barry structural_bioinformatics Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Systems biology. Life's complexity pyramid.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 763-764.
    by ZN Oltvai, AL Barabási
    posted to biomedical-cybernetics by jwdietrich to the group MathBio on 2007-08-02 00:24:05 as *** along with 7 people and 5 groups eldan yas wnpx sameetmehta mattjb franklin Ema Cybernetics ComplexAdaptiveSystems DSTO-CAS Biomedical_Cybernetics AQUA-FONTIS-Study
  • The shortest path to complex networks
    (24 July 2004)
    by S Dorogovtsev, J Mendes
    posted to diktyology by jwdietrich to the group MathBio on 2007-08-02 00:23:21 as *** along with 5 people and 4 groups nettraq DutchDreamer ansobol rasca ChaTo Philosophy_of_Information Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
    Biostatistics, Vol. 4, No. 2. (April 2003), pp. 249-264.
    by RA Irizarry, B Hobbs, F Collin, YD Beazer-Barclay, KJ Antonellis, U Scherf, TP Speed
    posted to affymetrix normalization rma statistics by dtc1 to the group MathBio on 2006-11-20 20:13:12 as *** along with 15 people and 3 groups vertikalist miguel textoris Dax42 RMGraze fisherp tvdbulck vpschulz rmk joepickrell ghattem bertelsen jo_davies waszak bakakaj Bioinformatics Computational_Systems_Biology Systems_Biology
  • Conditions for effective allosteric feedforward and feedback in metabolic pathways.
    Syst Biol (Stevenage), Vol. 153, No. 5. (September 2006), pp. 327-331.
    by JH Hofmeyr, JM Rohwer, JL Snoep
    posted to biomedical-cybernetics by jwdietrich to the group MathBio on 2006-11-09 18:38:40 as *** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Feedback loops for Shil'nikov chaos: The peroxidase-oxidase reaction.
    J Chem Phys, Vol. 125, No. 1. (7 July 2006)
    by A Sensse, MJ Hauser, M Eiswirth
    posted to biomedical-cybernetics by jwdietrich to the group MathBio on 2006-11-09 18:37:50 as *** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Comparing the regulatory behaviour of two cooperative, reversible enzyme mechanisms.
    Syst Biol (Stevenage), Vol. 153, No. 5. (September 2006), pp. 335-337.
    by BG Olivier, JM Rohwer, JL Snoep, JH Hofmeyr
    posted to biomedical-cybernetics by jwdietrich to the group MathBio on 2006-11-09 18:35:13 as *** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Pituitary Function During Severe and Life-threatening Illnesses
    Pituitary, Vol. 8, No. 3-4. (December 2005), pp. 213-217.
    by C Gauna, G Berghe, A Lely
    posted to clinical-thyroidology critical-care endocrinology by jwdietrich to the group MathBio on 2006-09-26 19:11:24 as *** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Robust perfect adaptation in bacterial chemotaxis through integral feedback control.
    Proc Natl Acad Sci U S A, Vol. 97, No. 9. (25 April 2000), pp. 4649-4653.
    by TM Yi, Y Huang, MI Simon, J Doyle
    posted to biomedical-cybernetics control-theory cybernetics by jwdietrich to the group MathBio on 2006-09-26 19:04:16 as *** along with 1 person and 3 groups rklancer Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Symmetric quasi-definite matrices
    Ultimately SIAM J. Optim, Vol. 5, No. 1. (1995), pp. 100-113.
    by Robert J Vanderbei
    posted to bsc-math-thesis ipm lp numerics optimization by aitter to the group MathBio on 2006-08-10 22:31:22 as *** along with 2 groups Numerics Optimization
  • Technological and Medical Implications of Metabolic Control (NATO SCIENCE PARTNERSHIP SUB-SERIES: 3: High Technology Volume 74)
    (31 December 1899)
    posted to biomedical-cybernetics control-theory cybernetics systems-biology by jwdietrich to the group MathBio on 2006-06-25 19:45:57 as *** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Cybernetics - Kybernetik 2
    (31 December 2004)
    by Alexander von Schönburg
    posted to cybernetics kybernetik by jwdietrich to the group MathBio on 2006-06-15 10:11:06 as *** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Cybernetics - Kybernetik 1.
    (30 November 2003)
    by Klaus Zimmermann
    posted to cybernetics kybernetik by jwdietrich to the group MathBio on 2006-06-15 10:10:09 as *** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Kinetics for the Life Sciences : Receptors, Transmitters and Catalysts
    (14 September 1995)
    by Herbert Gutfreund
    posted to biomedical-cybernetics cybernetics by jwdietrich to the group MathBio on 2006-06-15 09:59:48 as *** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Futurum Exactum : Ausgewählte Schriften zur Kybernetik und Kommunikationstheorie (Ästhetik und Naturwissenschaften / Medienkultur)
    by Norbert Wiener
    posted to cybernetics kybernetik by jwdietrich to the group MathBio on 2006-06-15 09:57:53 as *** along with 3 groups Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • On the Revival of Dynamic Languages
    Vol. 3628 (2005), pp. 1-13.
    by Oscar Nierstrasz, Alexandre Bergel, Marcus Denker, Stéphane Ducasse, Markus Gälli, Roel Wuyts
    edited by Thomas Gschwind, Uwe Aßmann
    posted to dynamic language programming by marimo to the group MathBio on 2005-07-23 15:21:54 as ***
  • The emergence of grammar: systematic structure in a new language.
    Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2661-2665.
    by W Sandler, I Meir, C Padden, M Aronoff
    posted to analysis cat_anthropology language_genesis pnas sign_language word_order by marimo to the group MathBio on 2005-05-16 09:18:09 as *** along with 5 people and 1 group annasafar mague garyfeng pieterw npuzzle ReadingLab
  • Code and Other Laws of Cyberspace
    (2005)
    by Lawrence Lessig
    posted to book by marimo to the group MathBio on 2005-05-10 23:43:39 as ***
  • The Mists of Avalon
    (01 June 1987)
    by Marion RADLEY Bradley
    posted to book fiction by marimo to the group MathBio on 2005-05-02 22:14:12 as ***
  • Pseudo-degrees of freedom for complex predictive models: the example of partial least squares
    Journal of Chemometrics, Vol. 13, No. 3-4. (1999), pp. 195-208.
    by Hilko van der Voet
    posted to cybernetics by jwdietrich to the group MathBio on 2008-04-05 13:59:25 as ** along with 2 groups Cybernetics Biomedical_Cybernetics
  • Time Scheduling of Transit Systems With Transfer Considerations Using Genetic Algorithms
    Evolutionary Computation, Vol. 6, No. 1. (1998), pp. 1-24.
    by Kalyanmoy Deb, Partha Chakroborty
    posted to genetic_algorithms computer_science algorithms by shantanu to the group MathBio on 2007-08-29 20:52:53 as ** along with 1 person and 9 groups aitter structural_bioinformatics Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology Numerics Optimization
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