Group: MBLAB - library 86 articles Export

	Microbial gene identification using interpolated Markov models [My Copy] Nucl. Acids Res., Vol. 26, No. 2. (15 January 1998), pp. 544-548. by S. L. Salzberg, A. L. Delcher, S. Kasif, O. White posted to 200806_prop by wenhan to the group MBLAB on 2008-06-25 21:28:02 as along with 7 people tfuji Ayest ziquje gg bnchakraborty bluto jguinney
	Titins in C.elegans with unusual features: coiled-coil domains, novel regulation of kinase activity and two new possible elastic regions. [My Copy] Journal of molecular biology, Vol. 323, No. 3. (25 October 2002), pp. 533-549. by D. B. Flaherty, K. M. Gernert, N. Shmeleva, et al.X. Tang, K. B. Mercer, M. Borodovsky, G. M. Benian posted to 200806_prop by wenhan to the group MBLAB on 2008-06-25 16:20:50 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	The gene identification problem: an overview for developers. [My Copy] Computers & chemistry, Vol. 20, No. 1. (March 1996), pp. 103-118. by J. W. Fickett posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:45:39 as
	Recognition of protein coding regions in DNA sequences. [My Copy] Nucleic acids research, Vol. 10, No. 17. (11 September 1982), pp. 5303-5318. by J. W. Fickett posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:45:11 as
	Finding genes by computer: the state of the art. [My Copy] Trends Genet, Vol. 12, No. 8. (August 1996), pp. 316-320. by J. W. Fickett posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:44:42 as along with 2 people and 2 groups fisherp ana structural_bioinformatics Bioinformatics
	Gene structure prediction by linguistic methods. [My Copy] Genomics, Vol. 23, No. 3. (October 1994), pp. 540-551. by S. Dong, D. B. Searls posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:44:07 as
	Maximum Likelihood from Incomplete Data via the EM Algorithm [My Copy] Journal of the Royal Statistical Society. Series B (Methodological), Vol. 39, No. 1. (1977), pp. 1-38. by A. P. Dempster, N. M. Laird, D. B. Rubin posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:43:28 as along with 73 people and 10 groups fjanoos beete chrahn flieder ianhales asterix77 Gorzomagnificent ctacmo reconnie claurier tkollar rily matjes erhanbas mthomure austin987 chiarafulgenzi mhofree NChopin ppeeling zhouyanpharm thefillm ejmeij tadao1102 czeller markusd zeppe Maderlock abrentnall cfelipesp jake ingo anoopsarkar gangli rpadams wkw hoangmtbk dragonrez Freyr lukec dheena songhaoyuan amirsaemi j3xucite ecome walkking nandan marrtin tvdbulck MichaelDonoser MikeDoni rwilliamson calamar qq987 ichbins81 petrposik ggorjan shiquanwang lcigler ciga kvorg ifejobi DavidSchulz ykuoka singhsh trop_wizz eddymier schulz stkhu eegilbert weymouth qwermish iansimon SEM Biostatistics LanguageModeling ilps Statistics_and_Social_Science tulip LTN Computer_Graphics Computational_Information_Geometry Medical Image Analysis and Visualization @ OSU
	Alignment of whole genomes. [My Copy] Nucleic acids research, Vol. 27, No. 11. (1 June 1999), pp. 2369-2376. by A. L. Delcher, S. Kasif, R. D. Fleischmann, J. Peterson, O. White, S. L. Salzberg posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:41:27 as along with 5 people maria_hauser pachorip dragonrez yoanjacquemin bozdagd
	Effective large-scale sequence similarity searches. [My Copy] Methods in enzymology, Vol. 266 (1996), pp. 212-227. by J. M. Claverie posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:40:50 as
	Computational methods for the identification of genes in vertebrate genomic sequences. [My Copy] Human molecular genetics, Vol. 6, No. 10. (1997), pp. 1735-1744. by J. M. Claverie posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:39:44 as
	Expectation maximization algorithm for identifying protein-binding sites with variable lengths from unaligned DNA fragments. [My Copy] Journal of molecular biology, Vol. 223, No. 1. (5 January 1992), pp. 159-170. by L. R. Cardon, G. D. Stormo posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:38:36 as
	HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins1 [My Copy] Journal of Molecular Biology, Vol. 301, No. 1. (04 August 2000), pp. 173-190. by Christopher Bystroff, Vesteinn Thorsson, David Baker posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:38:03 as along with 5 people jwm wouterboomsma j3xucite dgront rabio
	Evaluation of gene structure prediction programs. [My Copy] Genomics, Vol. 34, No. 3. (15 June 1996), pp. 353-367. by M. Burset, R. Guigó posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:37:22 as along with 4 people and 1 group rshe jmartin49 sonjadaniela indigoviolet EisenLab
	Finding the genes in genomic DNA. [My Copy] Current opinion in structural biology, Vol. 8, No. 3. (June 1998), pp. 346-354. by C. B. Burge, S. Karlin posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:32:52 as along with 1 person fisherp
	Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4756-4767. by M. Borodovsky, K. E. Rudd, E. V. Koonin posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 23:29:58 as
	Using GeneWise in the Drosophila Annotation Experiment [My Copy] Genome Research, Vol. 10, No. 4. (1 April 2000), pp. 547-548. by Ewan Birney, Richard Durbin posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 22:52:25 as along with 2 people operon rshe
	Heuristic approach to deriving models for gene finding. [My Copy] Nucleic Acids Res, Vol. 27, No. 19. (1 October 1999), pp. 3911-3920. by J. Besemer, M. Borodovsky posted to 200806_prop metagenomics_0208 by wenhan to the group MBLAB on 2008-06-24 22:50:22 as along with 4 people and 1 group indigoviolet azazello alexl GustavoLacerda EisenLab
	Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction [My Copy] Genome Research, Vol. 10, No. 7. (1 July 2000), pp. 950-958. by Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 22:18:35 as along with 5 people and 1 group stharward daveGerrard indigoviolet j3xucite treangen EisenLab
	On the convergence of a clustering algorithm for protein-coding regions in microbial genomes. [My Copy] Bioinformatics, Vol. 16, No. 4. (April 2000), pp. 367-371. by P. Baldi posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 22:16:51 as along with 1 person bioinfo
	An artificial intelligence approach to motif discovery in protein sequences: application to steriod dehydrogenases. [My Copy] The Journal of steroid biochemistry and molecular biology, Vol. 62, No. 1. (May 1997), pp. 29-44. by T. L. Bailey, M. E. Baker, C. P. Elkan posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 22:16:22 as
	Fitting a mixture model by expectation maximization to discover motifs in biopolymers [My Copy] (1994) by T. Bailey, C. Elkan posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 22:07:00 as along with 1 person wowalz
	The conserved exon method for gene finding. [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 3-12. by V. Bafna, D. H. Huson posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 21:08:18 as along with 2 people and 1 group jmartin49 indigoviolet EisenLab
	Self-identification of protein-coding regions in microbial genomes. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 17. (18 August 1998), pp. 10026-10031. by S. Audic, J. M. Claverie posted to 200806_prop by wenhan to the group MBLAB on 2008-06-24 21:07:22 as along with 1 person bioinfo
	Predicting genes expressed via -1 and +1 frameshifts [My Copy] Nucl. Acids Res., Vol. 32, No. 16. (15 September 2004), pp. 4884-4892. by Sanghoon Moon, Yanga Byun, Hong-Jin Kim, Sunjoo Jeong, Kyungsook Han posted to frameshift by azazello to the group MBLAB on 2007-10-16 22:33:38 as along with 1 person weaver
	Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. [My Copy] Nature methods, Vol. 4, No. 3. (11 March 2007), pp. 251-256. by M. Z. Li, S. J. Elledge posted to no-tag by azazello to the group MBLAB on 2007-09-18 19:16:29 as along with 9 people Vincent_Rouilly daericks guhjy dbikard yeastyboy faion pansapiens bala austin
	454 sequencing put to the test using the complex genome of barley [My Copy] BMC Genomics, Vol. 7 (26 October 2006), 275. by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J. Close, Beat Keller, Nils Stein posted to no-tag by azazello to the group MBLAB on 2007-09-13 17:46:17 as along with 7 people and 2 groups orzenil GustavoLacerda jmeppley balicea ghattem cisevol tpreeprem BergmanLab gatech-compgenomics
	Predicting functionally important residues from sequence conservation [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1875-1882. by John A. Capra, Mona Singh posted to no-tag by azazello to the group MBLAB on 2007-05-24 17:30:13 as along with 10 people jinghu_fandm iaolier sivaramanb grahamc zwang cabbagezs Jporci niallhaslam santiago dgront
	Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes. [My Copy] Genome Biol, Vol. 5, No. 9. (2004) by Y. Liu, P. M. Harrison, V. Kunin, M. Gerstein posted to no-tag by azazello to the group MBLAB on 2007-05-23 17:33:03 as along with 2 people operon alexl
	Psi-Phi: Exploring the outer limits of bacterial pseudogenes [My Copy] Genome Res., Vol. 14, No. 11. (1 November 2004), pp. 2273-2278. by Emmanuelle Lerat, Howard Ochman posted to no-tag by azazello to the group MBLAB on 2007-04-25 19:07:52 as along with 4 people treangen operon AaronDarling alexl
	Recognizing the pseudogenes in bacterial genomes. [My Copy] Nucleic Acids Res, Vol. 33, No. 10. (2005), pp. 3125-3132. by E. Lerat, H. Ochman posted to no-tag by azazello to the group MBLAB on 2007-04-25 18:47:51 as along with 2 people manzanita alexl
	Alignments of DNA and protein sequences containing frameshift errors [My Copy] Comput. Appl. Biosci., Vol. 12, No. 1. (1 February 1996), pp. 31-40. by Xiaojun Guan, Edward C. Uberbacher posted to no-tag by azazello to the group MBLAB on 2007-03-13 16:05:27 as
	PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames [My Copy] Nucl. Acids Res., Vol. 24, No. 14. (15 July 1996), pp. 2730-2739. by E. Birney, Jd Thompson, Tj Gibson posted to no-tag by azazello to the group MBLAB on 2007-03-13 15:31:37 as along with 1 person alexl
	Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors? [My Copy] Genome Biology, Vol. 8 (12 February 2007), R20. by Caroline Deshayes, Emmanuel Perrodou, Sebastien Gallien, et al.Daniel Euphrasie, Christine Schaeffer, Alain Van-Dorsselaer, Olivier Poch, Odile Lecompte, Jean-Marc Reyrat posted to no-tag by azazello to the group MBLAB on 2007-03-12 20:55:30 as along with 2 people alexl nitiniitk
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to no-tag by azazello to the group MBLAB on 2007-03-09 15:45:39 as along with 41 people and 6 groups sameersoi lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab
	The Stanford Microarray Database: implementation of new analysis tools and open source release of software. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by Janos Demeter, Catherine Beauheim, Jeremy Gollub, et al.Tina Hernandez-Boussard, Heng Jin, Donald Maier, John C. Matese, Michael Nitzberg, Farrell Wymore, Zachariah K. Zachariah, Patrick O. Brown, Gavin Sherlock, Catherine A. Ball posted to no-tag by azazello to the group MBLAB on 2007-03-09 15:44:10 as along with 9 people daforerog nuin jfr balajis hpiwowar ghattem dragonrez tvdbulck guhjy
	Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids [My Copy] (1998) by Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme Mitchison posted to no-tag by azazello to the group MBLAB on 2007-03-08 17:01:26 as
	Problems and Solutions in Biological Sequence Analysis [My Copy] (2006) by Mark Borodovsky, Svetlana Ekisheva posted to no-tag by azazello to the group MBLAB on 2007-03-08 16:58:32 as
	Codon usage between genomes is constrained by genome-wide mutational processes [My Copy] PNAS, Vol. 101, No. 10. (9 March 2004), pp. 3480-3485. by Swaine L. Chen, William Lee, Alison K. Hottes, Lucy Shapiro, Harley H. Mcadams posted to no-tag by azazello to the group MBLAB on 2007-03-08 16:48:28 as along with 3 people codonusage operon wenhan
	Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract. [My Copy] Appl Environ Microbiol, Vol. 73, No. 4. (February 2007), pp. 1388-1392. by E. S. Klaassens, W. M. de Vos, E. E. Vaughan posted to no-tag by azazello to the group MBLAB on 2007-03-08 16:47:50 as along with 7 people and 2 groups bluto dchughes michC wenhan nitiniitk barberan mcox G4ID Genetics-of-Gambling
	ARACHNE: A Whole-Genome Shotgun Assembler [My Copy] Genome Res., Vol. 12, No. 1. (1 January 2002), pp. 177-189. by Serafim Batzoglou, David B. Jaffe, Ken Stanley, et al.Jonathan Butler, Sante Gnerre, Evan Mauceli, Bonnie Berger, Jill P. Mesirov, Eric S. Lander posted to no-tag by azazello to the group MBLAB on 2007-03-08 16:38:29 as along with 11 people and 2 groups natstreet dakelley bpb dayjm balajis indigoviolet balicea ccr wenhan tpreeprem Neeperando EisenLab gatech-compgenomics
	Heterogeneous genomic molecular clocks in primates [My Copy] PLoS Genetics, Vol. preprint, No. 2006. (1 August 2006), e163.eor. by Seong-Ho Kim, Navin Elango, Charles Warden, Eric Vigoda, Soojin Yi posted to no-tag by azazello to the group MBLAB on 2007-03-08 16:30:47 as
	Heterogeneous Genomic Molecular Clocks in Primates [My Copy] posted to no-tag by azazello to the group MBLAB on 2007-03-08 16:28:49 as
	Community structure and metabolism through reconstruction of microbial genomes from the environment [My Copy] Nature, Vol. 428, No. 6978. (4 March 2004), pp. 37-43. by Gene W. Tyson, Jarrod Chapman, Philip Hugenholtz, et al.Eric E. Allen, Rachna J. Ram, Paul M. Richardson, Victor V. Solovyev, Edward M. Rubin, Daniel S. Rokhsar, Jillian F. Banfield posted to no-tag by azazello to the group MBLAB on 2007-03-08 14:45:59 as along with 7 people and 1 group balajis eweaver michC mabedin beatrizfernandez niallhaslam rvgomes Microbial-Ecology
	GISMO--gene identification using a support vector machine for ORF classification. [My Copy] Nucleic Acids Res, Vol. 35, No. 2. (2007), pp. 540-549. by L. Krause, A. C. McHardy, T. W. Nattkemper, A. Pühler, J. Stoye, F. Meyer posted to no-tag by azazello to the group MBLAB on 2007-03-08 03:38:36 as along with 2 people yngong0519 wenhan
	Detection of Short Protein Coding Regions within the Cyanobacterium Genome: Application of the Hidden Markov Model [My Copy] DNA Res, Vol. 3, No. 6. (1 January 1996), pp. 355-361. by Tetsushi Yada, Makoto Hirosawa posted to no-tag by azazello to the group MBLAB on 2007-03-08 03:37:33 as along with 2 people tfuji wenhan
	YACOP: Enhanced gene prediction obtained by a combination of existing methods. [My Copy] In Silico Biol, Vol. 3, No. 4. (2003), pp. 441-451. by M. Tech, R. Merkl posted to no-tag by azazello to the group MBLAB on 2007-03-08 03:36:31 as along with 1 person wenhan
	Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models. [My Copy] BMC Bioinformatics, Vol. 5 (5 March 2004) by S. Mahony, J. O. McInerney, T. J. Smith, A. Golden posted to no-tag by azazello to the group MBLAB on 2007-03-08 03:35:37 as along with 1 person wenhan
	Development of joint application strategies for two microbial gene finders [My Copy] Bioinformatics, Vol. 20, No. 10. (1 July 2004), pp. 1622-1631. by Alice C. McHardy, Alexander Goesmann, Alfred Puhler, Folker Meyer posted to no-tag by azazello to the group MBLAB on 2007-03-08 03:34:42 as along with 2 people druvus wenhan
	Dictionary-driven prokaryotic gene finding [My Copy] Nucl. Acids Res., Vol. 30, No. 12. (15 June 2002), pp. 2710-2725. by Tetsuo Shibuya, Isidore Rigoutsos posted to no-tag by azazello to the group MBLAB on 2007-03-08 03:33:21 as along with 2 people stharward wenhan
	Identifying bacterial genes and endosymbiont DNA with Glimmer. [My Copy] Bioinformatics (19 January 2007) by Arthur L L. Delcher, Kirsten A A. Bratke, Edwin C C. Powers, Steven L L. Salzberg posted to no-tag by azazello to the group MBLAB on 2007-03-08 00:04:24 as along with 1 person wenhan

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