Group: baker-group - library 6889 articles Export

	Variable-free exploration of stochastic models: a gene regulatory network example [My Copy] (6 Nov 2006) by Radek Erban, Thomas A. Frewen, Xiao Wang, et al.Timothy C. Elston, Ronald Coifman, Boaz Nadler, Ioannis G. Kevrekidis posted to kinetics multiscale systems_biology by sobolevnrm to the group baker-group on 2008-02-01 21:23:37 as along with 1 person j_vinals
	Diffusion maps, spectral clustering and reaction coordinates of dynamical systems [My Copy] ArXiv Mathematics e-prints (March 2005) by B. Nadler, S. Lafon, R. R. Coifman, I. G. Kevrekidis posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:23:15 as along with 2 people kb j_vinals
	Diffusion Maps, Spectral Clustering and Eigenfunctions of Fokker-Planck operators [My Copy] (6 Jun 2005) by Boaz Nadler, Stephane Lafon, Ronald R. Coifman, Ioannis G. Kevrekidis posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:22:37 as
	A detailed look at vesicle fusion. [My Copy] J Phys Chem B, Vol. 110, No. 26. (6 July 2006), pp. 13212-13219. by A. F. Smeijers, A. J. Markvoort, K. Pieterse, P. A. Hilbers posted to biomembranes by sobolevnrm to the group baker-group on 2008-01-24 01:11:23 as along with 1 person softsimu
	7Li NMR and DSC investigations of lithium phospholipid interactions [My Copy] Journal of Colloid and Interface Science, Vol. 143, No. 1. (April 1991), pp. 174-179. by J. F. M. Post, D. A. Wilkinson posted to solvation electrostatics biomembranes by sobolevnrm to the group baker-group on 2007-08-30 12:25:26 as
	$My PDF lundb\aek_06_regulation.pdf$ Regulation of membrane protein function by lipid bilayer elasticity—a single molecule technology to measure the bilayer properties experienced by an embedded protein [My Copy] Journal of Physics: Condensed Matter, Vol. 18, No. 28. (2006), pp. S1305-S1344. by Jens A. Lundb\aek posted to biomembranes by sobolevnrm to the group baker-group on 2007-08-28 12:43:33 as
	From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i63-68. by Pan Du, Gang Feng, Jared Flatow, et al.Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin posted to bioinformatics informatics ontology by sobolevnrm to the group baker-group on 2009-06-09 12:28:37 as along with 9 people bertelsen jfr kaarsinogen ruichu guhjy mikel_egana allysonlister fgibson dullhunk
	Asymmetric nature of lateral pressure profiles in supported lipid membranes and its implications for membrane protein functions [My Copy] Soft Matter (2009) by Chenyue Xing, Samuli O. H. Ollila, Ilpo Vattulainen, Roland Faller posted to biomembranes mechanics by sobolevnrm to the group baker-group on 2009-06-09 12:28:24 as
	Cloud computing [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), 1475. by Alex Bateman, Matt Wood posted to bioinformatics programming review by sobolevnrm to the group baker-group on 2009-06-09 12:28:12 as along with 23 people and 3 groups jfr rdiaz fgibson walshtp Jingbo aan pekrau tnhh niallhaslam bertelsen apaydin barry kiekyon reyez cymacs druvus acesforum thegoose mikel_egana dullhunk dswan jmeppley bmajoros structural_bioinformatics McCammon Bioinformatics
	Alignment of the UMLS semantic network with BioTop: methodology and assessment. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i69-76. by Stefan Schulz, Elena Beisswanger, László van den Hoek, Olivier Bodenreider, Erik M. van Mulligen posted to bioinformatics informatics ontology by sobolevnrm to the group baker-group on 2009-06-09 12:28:01 as along with 5 people guhjy dquest fgibson allysonlister dullhunk
	Radially Projected Finite Elements [My Copy] SIAM Journal on Scientific Computing, Vol. 31, No. 3. (2009), pp. 2368-2385. by Amnon J. Meir, Necibe Tuncer posted to diffusion finite_elements mathematics by sobolevnrm to the group baker-group on 2009-06-09 12:27:50 as
	Nanoscopic description of biomembrane electrostatics: Results of molecular dynamics simulations and fluorescence probing [My Copy] Chemistry and Physics of Lipids (27 May 2009) by Alexander P. Demchenko, Semen O. Yesylevskyy posted to biomembranes electrostatics by sobolevnrm to the group baker-group on 2009-06-09 12:27:39 as along with 2 people flbarroso paulschlesinger
	The nonlinear dielectric behavior of water: Comparisons of various approaches to the nonlinear dielectric increment [My Copy] The Journal of Chemical Physics, Vol. 130, No. 20. (2009), 204503. by Robert L. Fulton posted to electrostatics solvation by sobolevnrm to the group baker-group on 2009-06-08 12:39:01 as along with 1 person flbarroso
	Numerical studies of nonlocal electrostatic effects on the sub-nanoscale [My Copy] Journal of Physics: Condensed Matter, Vol. 21, No. 25. (2009), 255901. by Jorg Rottler, B. Krayenhoff posted to electrostatics solvation statistical_mechanics by sobolevnrm to the group baker-group on 2009-06-08 12:38:51 as along with 2 people Scis0000002 flbarroso
	Facile, Efficient Approach to Accomplish Tunable Chemistries and Variable Biodistributions for Shell Cross-Linked Nanoparticles [My Copy] Biomacromolecules, Vol. 9, No. 7. (1 July 2008), pp. 1997-2006. by Guorong Sun, Aviv Hagooly, Jinqi Xu, et al.Andreas M. Nyström, Zicheng Li, Raffaella Rossin, Dennis A. Moore, Karen L. Wooley, Michael J. Welch posted to cancer nanotech by sobolevnrm to the group baker-group on 2009-06-08 12:38:35 as along with 1 person ml115
	Improved paramagnetic chelate for molecular imaging with MRI [My Copy] Journal of Magnetism and Magnetic Materials, Vol. 293, No. 1. (May 2005), pp. 540-545. by P. Winter, P. Athey, G. Kiefer, et al.G. Gulyas, K. Frank, R. Fuhrhop, D. Robertson, S. Wickline, G. Lanza posted to emulsions imaging nanotech nmr perfluorocarbons by sobolevnrm to the group baker-group on 2009-06-08 12:38:21 as
	Geometric considerations in virus capsid size specificity, auxiliary requirements, and buckling [My Copy] Proceedings of the National Academy of Sciences (13 May 2009) by Ranjan V. Mannige, Charles L. Brooks posted to mechanics structure virus by sobolevnrm to the group baker-group on 2009-05-29 12:18:15 as along with 2 people tapioka kshundyak
	Progress in the Perturbation Approach in Fluid and Fluid-Related Theories [My Copy] Chemical Reviews, Vol. 0, No. 0. (0000) by Shiqi Zhou, J. R. Solana posted to review solvation statistical_mechanics by sobolevnrm to the group baker-group on 2009-05-29 12:18:04 as along with 1 person paulschlesinger
	The caBIG terminology review process. [My Copy] Journal of biomedical informatics (25 December 2008) by James J J. Cimino, Terry F F. Hayamizu, Olivier Bodenreider, Brian Davis, Grace A A. Stafford, Martin Ringwald posted to ontology review by sobolevnrm to the group baker-group on 2009-05-29 12:17:45 as along with 3 people beanformer Gaetan dullhunk
	The NCI Thesaurus quality assurance life cycle [My Copy] Journal of Biomedical Informatics (23 January 2009) by Sherri de Coronado, Lawrence W. Wright, Gilberto Fragoso, et al.Margaret W. Haber, Elizabeth A. Hahn-Dantona, Francis W. Hartel, Sharon L. Quan, Tracy Safran, Nicole Thomas, Lori Whiteman posted to ontology review by sobolevnrm to the group baker-group on 2009-05-29 12:17:38 as
	A review of auditing methods applied to the content of controlled biomedical terminologies [My Copy] Journal of Biomedical Informatics (12 March 2009) by Xinxin Zhu, Jung-Wei Fan, David M. Baorto, Chunhua Weng, James J. Cimino posted to ontology review by sobolevnrm to the group baker-group on 2009-05-29 12:17:30 as
	Interaction of an Antimicrobial Peptide with a Model Lipid Bilayer Using Molecular Dynamics Simulation [My Copy] Langmuir, Vol. 0, No. 0. (0000) by Wael Soliman, Subir Bhattacharjee, Kamaljit Kaur posted to biomembranes protein-membrane_interactions by sobolevnrm to the group baker-group on 2009-05-29 12:15:52 as along with 1 person paulschlesinger
	Na+ binding to meizothrombin desF1 [My Copy] Cellular and Molecular Life Sciences (CMLS), Vol. 65, No. 22. (1 November 2008), pp. 3688-3697. by M. Papaconstantinou, P. Gandhi, Z. Chen, A. Bah, E. Di Cera posted to thrombin by sobolevnrm to the group baker-group on 2009-05-28 12:32:19 as
	Modeling the Mechanical Response of Proteins to Anisotropic Deformation [My Copy] ChemPhysChem, Vol. 10, No. 1. (2009), pp. 115-118. by Sophie Sacquin-Mora, Richard Lavery posted to quasiharmonic_models by sobolevnrm to the group baker-group on 2009-05-28 12:32:12 as
	A phase field method for simulating morphological evolution of vesicles in electric fields [My Copy] Journal of Computational Physics, Vol. 228, No. 11. (20 June 2009), pp. 4162-4181. by Ling-Tian Gao, Xi-Qiao Feng, Huajian Gao posted to biomembranes flexoelectric by sobolevnrm to the group baker-group on 2009-05-28 12:32:00 as
	Fluctuation Theorems [My Copy] Annual Review of Physical Chemistry, Vol. 59, No. 1. (2008), pp. 603-633. by E. M. Sevick, R. Prabhakar, Stephen R. Williams, Debra J. Searles posted to review statistical_mechanics by sobolevnrm to the group baker-group on 2009-05-28 12:31:49 as
	Parallel multigrid summation for the N-body problem [My Copy] Journal of Parallel and Distributed Computing, Vol. 65, No. 8. (August 2005), pp. 949-962. by Jesus A. Izaguirre, Scott S. Hampton, Thierry Matthey posted to electrostatics programming by sobolevnrm to the group baker-group on 2009-05-28 12:31:39 as along with 2 people r2s2 softsimu
	A simple formula for dielectric polarisation energies: The Sheffield Solvation Model [My Copy] Chemical Physics Letters, Vol. 441, No. 1-3. (13 June 2007), pp. 163-166. by J. A. Grant, B. T. Pickup, M. J. Sykes, C. A. Kitchen, A. Nicholls posted to electrostatics solvation by sobolevnrm to the group baker-group on 2009-05-28 12:31:27 as along with 1 person flbarroso
	Darwinian biophysics: Electrostatics and evolution in the kinetics of molecular binding [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7683-7684. by J. Andrew McCammon posted to diffusion electrostatics review by sobolevnrm to the group baker-group on 2009-05-27 12:02:43 as along with 4 people flbarroso apaydin shenjjjj jjray
	How to Get the Most out of Your Curation Effort [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000391. by Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur posted to bioinformatics informatics review by sobolevnrm to the group baker-group on 2009-05-27 12:02:30 as along with 16 people and 3 groups daveGerrard CorinYeats abhishek_tiwari daforerog klexa lptolik kiekyon badger_master druvus martingerner cisevol AlexBateman VGreiff allysonlister fgibson dullhunk Orengo Group Journal Picks BergmanLab Journal picks
	Salt induced asymmetry in membrane simulations by partial restriction of ionic motion. [My Copy] The Journal of chemical physics, Vol. 130, No. 19. (21 May 2009) by Fernando E E. Herrera, Sergio Pantano posted to biomembranes electrostatics molecular_simulation by sobolevnrm to the group baker-group on 2009-05-27 12:02:13 as
	Static and Dynamic Properties of Phospholipid Bilayer Nanodiscs [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Minoru Nakano, Masakazu Fukuda, Takayuki Kudo, et al.Masakazu Miyazaki, Yusuke Wada, Naoya Matsuzaki, Hitoshi Endo, Tetsurou Handa posted to biomembranes nanotech structure by sobolevnrm to the group baker-group on 2009-05-26 12:45:17 as along with 1 person birte
	Thermodynamics of flip-flop and desorption for a systematic series of phosphatidylcholine lipids [My Copy] Soft Matter (2009) by Nicolas Sapay, Drew W. F. Bennett, Peter D. Tieleman posted to biomembranes solvation by sobolevnrm to the group baker-group on 2009-05-26 12:45:04 as along with 1 person arnaucordomi
	Restoring Charge Asymmetry in Continuum Electrostatics Calculations of Hydration Free Energies [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 24. (18 June 2009), pp. 8206-8209. by Enrico O. Purisima, Traian Sulea posted to electrostatics solvation by sobolevnrm to the group baker-group on 2009-05-26 12:44:52 as along with 3 people Elena_Zubova onufriev agrossfield
	An Adaptive Fast Multipole Boundary Element Method for Poisson−Boltzmann Electrostatics [My Copy] Journal of Chemical Theory and Computation, Vol. 0, No. 0. (0000) by Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, Andrew J. Mccammon posted to boundary_element electrostatics mathematics by sobolevnrm to the group baker-group on 2009-05-26 12:44:44 as
	Intrinsic Potential of Cell Membranes: Opposite Effects of Lipid Transmembrane Asymmetry and Asymmetric Salt Ion Distribution [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 20. (21 May 2009), pp. 7194-7198. by Andrey A. Gurtovenko, Ilpo Vattulainen posted to biomembranes electrostatics by sobolevnrm to the group baker-group on 2009-05-26 12:44:31 as along with 1 person agrossfield
	Ionic Binding of Na+ versus K+ to the Carboxylic Acid Headgroup of Palmitic Acid Monolayers Studied by Vibrational Sum Frequency Generation Spectroscopy† [My Copy] The Journal of Physical Chemistry A, Vol. 0, No. 0. (0000) by Cheng Y. Tang, Heather C. Allen posted to biomembranes electrostatics solvation by sobolevnrm to the group baker-group on 2009-05-21 12:08:50 as
	Emerging roles for lipids in shaping membrane-protein function [My Copy] Nature, Vol. 459, No. 7245. (20 May 2009), pp. 379-385. by Rob Phillips, Tristan Ursell, Paul Wiggins, Pierre Sens posted to biomembranes mechanics protein-membrane_interactions review by sobolevnrm to the group baker-group on 2009-05-21 12:08:34 as along with 7 people girayenkavi viktor21614 agrossfield cjryan kevinchannon hsekiguc nelfarargy
	Biophysical dissection of membrane proteins [My Copy] Nature, Vol. 459, No. 7245. (20 May 2009), pp. 344-346. by Stephen H. White posted to biomembranes protein-membrane_interactions review structure by sobolevnrm to the group baker-group on 2009-05-21 12:08:19 as along with 9 people and 2 groups amoszlj rph girayenkavi ColumbusLabs viktor21614 kevinchannon hsekiguc barry paulschlesinger structural_bioinformatics McCammon
	The origin of the electrostatic perturbation in acetoacetate decarboxylase [My Copy] Nature, Vol. 459, No. 7245. (21 May 2009), pp. 393-397. by Meng-Chiao Ho, Jean-Francois Menetret, Hiro Tsuruta, Karen N. Allen posted to electrostatics pka solvation structure by sobolevnrm to the group baker-group on 2009-05-21 12:08:07 as along with 2 people girayenkavi flbarroso
	Electrostatically Mediated Liposome Fusion and Lipid Exchange with a Nanoparticle-Supported Bilayer for Control of Surface Charge, Drug Containment, and Delivery [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Juewen Liu, Xingmao Jiang, Carlee Ashley, Jeffrey C. Brinker posted to biomembranes drug_delivery nanotech by sobolevnrm to the group baker-group on 2009-05-20 12:46:44 as
	Thermodynamically dominant hydration structures of aqueous ions [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195102. by Safir Merchant, D. Asthagiri posted to electrostatics solvation by sobolevnrm to the group baker-group on 2009-05-20 12:46:30 as along with 5 people afenley mikaellund flbarroso dlimmer agrossfield
	Frequency-resolved communication maps for proteins and other nanoscale materials [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195101. by David M. Leitner posted to allostery quasiharmonic_models by sobolevnrm to the group baker-group on 2009-05-20 12:46:21 as along with 2 people and 2 groups biblioteca_babel barry structural_bioinformatics McCammon
	Role of Cardiolipins in the Inner Mitochondrial Membrane: Insight Gained through Atom-Scale Simulations [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 11. (19 March 2009), pp. 3413-3422. by Tomasz Róg, Hector Martinez-Seara, Nana Munck, Matej Orešič, Mikko Karttunen, Ilpo Vattulainen posted to biomembranes molecular_dynamics by sobolevnrm to the group baker-group on 2009-05-20 12:46:09 as along with 2 people paulschlesinger carlosjavierna
	Monte Carlo Simulations of Small Vesicles under Osmotic Pressure [My Copy] Langmuir, Vol. 25, No. 13. (7 July 2009), pp. 7313-7319. by T. Zehl, M. Wahab, H. J. Mögel, P. Schiller posted to biomembranes solvation by sobolevnrm to the group baker-group on 2009-05-20 12:45:55 as along with 2 people carlosjavierna paulschlesinger
	CHARMM: The biomolecular simulation program [My Copy] Journal of Computational Chemistry, Vol. 30, No. 10. (30 July 2009), pp. 1545-1614. by B. R. Brooks, C. L. Brooks, A. D. Mackerell, et al.L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, M. Karplus posted to molecular_dynamics molecular_simulation by sobolevnrm to the group baker-group on 2009-05-19 12:00:47 as along with 8 people rodrigofaccioli mmuecke medic0747 flbarroso jrperillaj xavierprat saravan dimka
	Nanoparticle-mediated targeting of MAPK signaling predisposes tumor to chemotherapy. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (21 April 2009) by Sudipta Basu, Rania Harfouche, Shivani Soni, Geetanjali Chimote, Raghunath A A. Mashelkar, Shiladitya Sengupta posted to cancer nanotech by sobolevnrm to the group baker-group on 2009-05-19 12:00:36 as along with 3 people eagleriskmgmt paulschlesinger renatomilani
	The membrane-activity of Ibuprofen, Diclofenac, and Naproxen: A physico-chemical study with lecithin phospholipids [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1788, No. 6. (June 2009), pp. 1296-1303. by Marcela M. Moreno, Patrick Garidel, Mario Suwalsky, Jörg Howe, Klaus Brandenburg posted to biomembranes ligand-membrane_interactions by sobolevnrm to the group baker-group on 2009-05-19 12:00:22 as
	Alamethicin in lipid bilayers: Combined use of X-ray scattering and MD simulations [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1788, No. 6. (June 2009), pp. 1387-1397. by Jianjun Pan, Peter D. Tieleman, John F. Nagle, Norbert Kučerka, Stephanie Tristram-Nagle posted to biomembranes protein-membrane_interactions by sobolevnrm to the group baker-group on 2009-05-19 12:00:06 as
	Characterization of Large Conformational Changes and Autoproteolysis in the Maturation of a T=4 Virus Capsid [My Copy] J. Virol., Vol. 83, No. 2. (15 January 2009), pp. 1126-1134. by Tsutomu Matsui, Gabriel Lander, John E. Johnson posted to electrostatics pka structure virus by sobolevnrm to the group baker-group on 2009-05-19 11:59:51 as

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electrostatics	1656
solvation	1346
biomembranes	1300
mathematics	510
bioinformatics	485
statistical_mechanics	478
molecular_dynamics	466
diffusion	457
nucleic_acids	434
molecular_simulation	431
multiscale	349
structure	262
quasiharmonic-models_elastic-network_gnm_nma_pca_etc	259
nanotech	249
allostery	243
protein_folding	190
protein-protein_interactions	169
systems_biology	166
acetylcholinesterase	158
protein-ligand_interactions	151
biological_systems	149
software	143
experimental_methodology	138
thrombin	132
misc	129
neuromuscular_junctions	121
kinetics	117
correlated_mutations	113
review	107
protein-nucleic_acid_interactions	104
outer_hair_cells	102
drug_design	98
cellular_mechanics	91
metalloregulation	90
database	88
structure_prediction	87
pka	82
nerve_agents	78
ccne	75
imaging	74
quantum_mechanics	71
nitric_oxide	62
visualization	62
career	60
emulsions	60
protein-membrane_interactions	50
beyond_mean_field	47
nonpolar	44
nmr	43
quasiharmonic_models	42
protein_engineering	39
bibtex-import	38
ligand-membrane_interactions	35
enhanced_sampling	33
interfaces	33
cancer	31
ion_channels	31
oxysterols	30
sterols	28
clustering	27
mechanics	27
teaching	27
ultrasound	27
free_energy	26
ontology	24
sccne	23
pgdh	21
perfluorocarbons	18
flexoelectric	17
helicase	17
integral_equation	17
ribosome	16
statistics	13
programming	12
apbs	11
graph_theory	11
funding	9
energy_landscapes	8
geometry	8
cytoskeleton	7
fluid_mechanics	7
informatics	7
toxicity	7
drug_delivery	6
pdb2pqr	6
nikr	4
cholesterol	3
docking	3
electrochemistry	3
neuroscience	3
protein-membraneinteractions	3
biodistribution	2
computational_geometry	2
ethics	2
hydrodynamics	2
magnetism	2
optimization	2
virus	2
biology	1
boundary_element	1
electrostatic	1
finite_element	1
finite_elements	1
generalized_born	1
imagining	1
interface	1
molecular	1
parameterization	1
pb2pqr	1
photosynthesis	1
salicylate	1
simulation	1
single_molecule	1

Group: baker-group - library 6889 articles Export

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