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Group: baker-group - library [6137 articles]

Recent papers posted by members of the baker-group group
  • Variable-free exploration of stochastic models: a gene regulatory network example
    (6 Nov 2006)
    by Radek Erban, Thomas A Frewen, Xiao Wang, Timothy C Elston, Ronald Coifman, Boaz Nadler, Ioannis G Kevrekidis
    posted to kinetics multiscale systems_biology by sobolevnrm to the group baker-group on 2008-02-01 21:23:37 as *****
  • Diffusion maps, spectral clustering and reaction coordinates of dynamical systems
    ArXiv Mathematics e-prints (March 2005)
    by B Nadler, S Lafon, RR Coifman, IG Kevrekidis
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:23:15 as ***** along with 1 person kb
  • Diffusion Maps, Spectral Clustering and Eigenfunctions of Fokker-Planck operators
    (6 Jun 2005)
    by Boaz Nadler, Stephane Lafon, Ronald R Coifman, Ioannis G Kevrekidis
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:22:37 as *****
  • A detailed look at vesicle fusion.
    J Phys Chem B, Vol. 110, No. 26. (6 July 2006), pp. 13212-13219.
    by AF Smeijers, AJ Markvoort, K Pieterse, PA Hilbers
    posted to biomembranes by sobolevnrm to the group baker-group on 2008-01-24 01:11:23 as **** along with 1 person softsimu
  • 7Li NMR and DSC investigations of lithium phospholipid interactions
    Journal of Colloid and Interface Science, Vol. 143, No. 1. (April 1991), pp. 174-179.
    by JFM Post, DA Wilkinson
    posted to solvation electrostatics biomembranes by sobolevnrm to the group baker-group on 2007-08-30 12:25:26 as ****
  • Regulation of membrane protein function by lipid bilayer elasticity—a single molecule technology to measure the bilayer properties experienced by an embedded protein
    Journal of Physics: Condensed Matter, Vol. 18, No. 28. (2006), pp. S1305-S1344.
    by Jens A Lundb\aek
    posted to biomembranes by sobolevnrm to the group baker-group on 2007-08-28 12:43:33 as ****
  • Nonlinear total variation based noise removal algorithms
    (1992), pp. 259-268.
    by Leonid I Rudin, Stanley Osher, Emad Fatemi
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:21:35 as ** along with 1 person derinb
  • Targeted Quantum Dot Conjugates for siRNA Delivery.
    Bioconjug Chem (14 July 2007)
    by Austin M Derfus, Alice A Chen, Dal-Hee H Min, Erkki Ruoslahti, Sangeeta N Bhatia
    posted to nucleic_acids nanotech drug_design ccne by sobolevnrm to the group baker-group on 2008-05-15 11:51:36 as ** along with 2 people jyuh ml115
  • If you build it... How to create a great laboratory Web site.
    The Scientist, Vol. 22, No. 3. (2008), pp. 81-81.
    by J Scheff
    posted to misc by sobolevnrm to the group baker-group on 2008-05-09 11:21:17 as **
  • webPIPSA: a web server for the comparison of protein interaction properties
    Nucl. Acids Res. (17 April 2008), gkn181.
    by Stefan Richter, Anne Wenzel, Matthias Stein, Razif R Gabdoulline, Rebecca C Wade
    posted to bioinformatics electrostatics pdb2pqr software structure by sobolevnrm to the group baker-group on 2008-04-18 19:21:27 as ** along with 1 person jyuh
  • High-Resolution Crystal Structure of an Engineered Human beta2-Adrenergic G Protein Coupled Receptor.
    Science (25 October 2007)
    by Vadim Cherezov, Daniel M M Rosenbaum, Michael A A Hanson, Søren G F G Rasmussen, Foon Sun S Thian, Tong Sun S Kobilka, Hee-Jung J Choi, Peter Kuhn, William I I Weis, Brian K K Kobilka, Raymond C C Stevens
    posted to apbs structure by sobolevnrm to the group baker-group on 2008-04-18 14:05:54 as ** along with 6 people and 2 groups jwm Fritz gcaltabiano merj davidlott rph neurolit LabCompMed
  • How Well Does Poisson-Boltzmann Implicit Solvent Agree with Explicit Solvent? A Quantitative Analysis
    J. Phys. Chem. B, Vol. 110, No. 37. (21 September 2006), pp. 18680-18687.
    by C Tan, L Yang, R Luo
    posted to electrostatics molecular_simulation solvation by sobolevnrm to the group baker-group on 2008-04-18 11:27:21 as **
  • Imaging and Tracking of Tat Peptide-Conjugated Quantum Dots in Living Cells: New Insights into Nanoparticle Uptake, Intracellular Transport, and Vesicle Shedding
    J. Am. Chem. Soc., Vol. 129, No. 47. (28 November 2007), pp. 14759-14766.
    by G Ruan, A Agrawal, AI Marcus, S Nie
    posted to ccne imaging nanotech by sobolevnrm to the group baker-group on 2008-04-11 12:08:15 as ** along with 2 people and 1 group samjlord ml115 moernerlab
  • Viral-Induced Self-Assembly of Magnetic Nanoparticles Allows the Detection of Viral Particles in Biological Media
    J. Am. Chem. Soc., Vol. 125, No. 34. (27 August 2003), pp. 10192-10193.
    by JM Perez, FJ Simeone, Y Saeki, L Josephson, R Weissleder
    posted to ccne imaging nanotech protein-protein_interactions by sobolevnrm to the group baker-group on 2008-03-28 11:04:42 as ** along with 1 person ml115
  • Poly(ethylene oxide)-modified poly(beta-amino ester) nanoparticles as a pH-sensitive system for tumor-targeted delivery of hydrophobic drugs: part 3. Therapeutic efficacy and safety studies in ovarian cancer xenograft model
    Cancer Chemotherapy and Pharmacology, Vol. 59, No. 4. (March 2007), pp. 477-484.
    by Devalapally, Harikrishna, Shenoy, Dinesh, Little, Steven, Langer, Robert, Amiji, Mansoor
    posted to ccne drug_design nanotech by sobolevnrm to the group baker-group on 2008-02-22 11:53:23 as ** along with 1 person ml115
  • Specific Ion Adsorption and Surface Forces in Colloid Science
    J. Phys. Chem. B, Vol. 112, No. 6. (14 February 2008), pp. 1580-1585.
    by ERA Lima, D Horinek, RR Netz, EC Biscaia, FW Tavares, W Kunz, M Bostrom
    posted to biomembranes electrostatics interfaces solvation by sobolevnrm to the group baker-group on 2008-02-20 12:39:17 as **
  • notes A master equation model for bimolecular reaction via multi-well isomerizing intermediates
    Physical Chemistry Chemical Physics, Vol. 2 (2000), pp. 793-803.
    by TJ Frankcombe, SC Smith, KE Gates, SH Robertson
    posted to diffusion kinetics by sobolevnrm to the group baker-group on 2008-02-14 18:31:53 as **
  • Molecular Imaging by Cardiovascular MR
    Journal of Cardiovascular Magnetic Resonance, Vol. 9, No. 6. (2007), pp. 827-843.
    by Tillmann Cyrus, Gregory M Lanza, Samuel A Wickline
    posted to imaging nanotech nmr sccne by sobolevnrm to the group baker-group on 2008-02-12 13:03:42 as **
  • Hamiltonian and Distance Replica Exchange Method Studies of Met-Enkephalin
    J. Phys. Chem. B, Vol. 111, No. 42. (25 October 2007), pp. 12310-12321.
    by L Su, RI Cukier
    posted to allostery enhanced_sampling molecular_simulation by sobolevnrm to the group baker-group on 2007-12-05 12:35:23 as **
  • Role of nonadditive forces on the structure and properties of liquid water
    Journal of Chemical Physics, Vol. 127 (2007), 154509.
    by J Li, Z Zhou, RJ Sadus
    posted to molecular_simulation solvation by sobolevnrm to the group baker-group on 2007-11-20 12:18:38 as **
  • Control of electrostatic interactions between F-actin and genetically modified lysozyme in aqueous media
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 15994-15999.
    by Lori K Sanders, Wujing Xian, Camilo Guaqueta, Michael J Strohman, Chuck R Vrasich, Erik Luijten, Gerard C Wong
    posted to electrostatics experimental_methodology by sobolevnrm to the group baker-group on 2007-10-25 15:28:53 as **
  • The narrow escape problem for diffusion in cellular microdomains
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 16098-16103.
    by Z Schuss, A Singer, D Holcman
    posted to diffusion kinetics mathematics statistical_mechanics by sobolevnrm to the group baker-group on 2007-10-25 15:01:43 as **
  • Minimal molecular surfaces and their applications
    Journal of Computational Chemistry, Vol. 9999, No. 9999. (2007), NA.
    by PW Bates, GW Wei, Shan Zhao
    posted to electrostatics mathematics by sobolevnrm to the group baker-group on 2007-09-24 12:59:27 as **
  • Taking on that first faculty job
    Nature, No. 1142. (447)
    by D Burgess
    posted to bibtex-import career by sobolevnrm to the group baker-group on 2007-06-28 12:59:26 as **
  • Diffusion on ruffled membrane surfaces
    Journal of Chemical Physics, Vol. 126 (2007)
    by A Naji, FLH Brown
    posted to bibtex-import multiscale diffusion biomembranes by sobolevnrm to the group baker-group on 2007-06-28 12:59:26 as **
  • Simple models for biomembrane structure and dynamics
    Computer Physics Communications, Vol. 177, No. 1-2. (2007), pp. 172-5.
    by FLH Brown
    posted to bibtex-import multiscale biomembranes by sobolevnrm to the group baker-group on 2007-06-28 12:59:26 as **
  • Retinotopic Map Refinement Requires Spontaneous Retinal Waves during a Brief Critical Period of Development
    Neuron, Vol. 40, No. 6. (18 December 2003), pp. 1147-1160.
    by T Mclaughlin, CL Torborg, MB Feller, DDM O'Leary
    posted to neuroscience by trichner to the group baker-group on 2007-06-08 16:05:19 as **
  • Sustainable databases
    Nature Cell Biology, Vol. 8, No. 12. (2006)
    posted to funding database by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Evaluation of the electric force in electrophoresis
    Journal of Colloid and Interface Science, Vol. 305, No. 2. (2007), pp. 324-9.
    by JP Hsu, LH Yeh, MH Ku
    posted to electrostatics diffusion by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Amazon puts network power online
    Nature, Vol. 444, No. 7119. (2006)
    by D Butler
    posted to misc by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Origin of Short-Range Repulsion between Hydrated Phospholipid Bilayers: A Computer Simulation Study
    Langmuir (in press)
    by A Pertsin, D Platonov, M Grunze
    posted to biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Implementation of a symplectic multiple-time-step molecular dynamics algorithm, based on the united-residue mesoscopic potential energy function
    Journal of Chemical Physics, Vol. 125 (2006)
    by F Rakowski, J Grochowski, B Lesyng, A Liwo, HA Scheraga
    posted to multiscale molecular_dynamics by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • The effect of a transmembrane osmotic flux on the ion concentration distribution in the immediate membrane vicinity measured by microelectrodes
    Biophysical Journal, Vol. 72, No. 4. (1997), pp. 1711-8.
    by P Pohl, SM Saparov, YN Antonenko
    posted to solvation electrostatics biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Simulation of water transport through a lipid membrane
    Journal of Physical Chemistry, Vol. 98, No. 15. (1994), pp. 4155-68.
    by SJ Marrink, HJC Berendsen
    posted to solvation biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • NMR study of rapid water diffusion across lipid bilayers in dipalmitoyl lecithin vesicles
    Biochemical and Biophysical Research Communications, Vol. 60, No. 2. (1974), pp. 813-9.
    by J Andrasko, S Forsã\copyrightn
    posted to solvation biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Water and nonelectrolyte permeability of lipid bilayer membranes
    Journal of General Physiology, Vol. 68, No. 2. (1976), pp. 127-35.
    by A Finkelstein
    posted to solvation biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Individual Leaflets of a Membrane Bilayer Can Independently Regulate Permeability
    Journal of Biological Chemistry, Vol. 271, No. 20. (1996), pp. 11627-30.
    by HO Negrete, RL Rivers, AH Gough, M Colombini, ML Zeidel
    posted to solvation biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Water Permeability of Asymmetric Planar Lipid Bilayers: Leaflets of Different Composition Offer Independent and Additive Resistances to Permeation
    Journal of General Physiology, Vol. 118, No. 4. (2001), pp. 333-40.
    by AV Krylov, P Pohl, ML Zeidel, WG Hill
    posted to solvation biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Fast Boundary Element Method for the Linear Poisson-Boltzmann Equation
    Journal of Physical Chemistry B, Vol. 106, No. 10. (2002), pp. 2741-54.
    by AH Boschitsch, MO Fenley, HX Zhou
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Reduction and solution of the chemical master equation using time scale separation and finite state projection
    Journal of Chemical Physics, Vol. 125 (2006)
    by S Peles, B Munsky, M Khammash
    posted to systems_biology mathematics diffusion by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Binding of alkaline-earth metal cations and some anions to phosphatidylcholine liposomes
    European Journal of Biochemistry, Vol. 170, No. 1. (1987), pp. 413-20.
    by SA Tatulian
    posted to solvation electrostatics biomembranes by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as **
  • Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 20. (2007), pp. 8484-9.
    by DR Hyduke, LR Jarboe, LM Tran, KJY Chou, JC Liao
    posted to systems_biology nitric_oxide biology by sobolevnrm to the group baker-group on 2007-05-25 12:23:45 as **
  • Mesoscopic dynamics of complex vesicle formation: kinetic versus thermodynamic factors
    Molecular Simulation, Vol. 33, No. 4-5. (2007), pp. 405-15.
    by GJA Sevink, AV Zvelindovsky
    posted to multiscale biomembranes by sobolevnrm to the group baker-group on 2007-05-25 12:23:45 as **
  • A solution NMR study showing that active site ligands and nucleotides directly perturb the allosteric equilibrium in aspartate transcarbamoylase
    Proceedings of the National Academy of Sciences of the United States of America (in press)
    by A Velyvis, YR Yang, HK Schachman, LE Kay
    posted to bibtex-import allostery by sobolevnrm to the group baker-group on 2007-05-25 12:23:45 as **
  • Finite volume solution of the modified Poisson--Boltzmann equation for two colloidal particles
    Physical Chemistry Chemical Physics, Vol. in press (2007)
    by ERA Lima, FW Tavares, EC Biscaia
    posted to bibtex-import solvation mathematics electrostatics by sobolevnrm to the group baker-group on 2007-05-25 12:23:45 as **
  • Structural and Thermodynamic Properties of Selective Ion Binding in a K+ Channel
    PLoS Biology, Vol. 5, No. 5. (2007)
    by SW Lockless, M Zhou, R Mackinnon
    posted to bibtex-import thrombin misc by sobolevnrm to the group baker-group on 2007-05-25 12:23:45 as **
  • On the Brownian motion in a double-well potential in the overdamped limit
    Physica A, Vol. 377, No. 2. (2007), pp. 412-20.
    by YP Kalmykov, WT Coffey, SV Titov
    posted to statistical_mechanics kinetics diffusion bibtex-import by sobolevnrm to the group baker-group on 2007-05-25 12:23:45 as **
  • Diffusion Limited Reactions
    SIAM Journal on Applied Mathematics, Vol. 67, No. 4. (2007), pp. 1147-65.
    by B Goldstein, H Levine, D Torney
    posted to bibtex-import mathematics kinetics diffusion by sobolevnrm to the group baker-group on 2007-05-25 12:23:45 as **
  • Comparative Study of the Effect of Tail Corrections on Surface Tension Determined by Molecular Simulation
    Journal of Physical Chemistry B (in press)
    by VK Shen, RD Mountain, JR Errington
    posted to bibtex-import simulation molecular biomembranes by sobolevnrm to the group baker-group on 2007-05-25 12:23:45 as **
  • Effect of calcium ion on the mechanical properties of lipid bilayer membrane
    Biorheology, Vol. 19, No. 1/2. (1982), pp. 185-96.
    by S Mitaku, S Aruga
    posted to bibtex-import ultrasound biomembranes by sobolevnrm to the group baker-group on 2007-05-25 12:23:45 as **
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