Group: baker-group - with tag allostery [at least 200 articles] Export

Recent papers posted by members of the baker-group group with tag allostery

	Frequency-resolved communication maps for proteins and other nanoscale materials [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195101. by David M. Leitner posted to allostery quasiharmonic_models by sobolevnrm to the group baker-group on 2009-05-20 12:46:21 as along with 2 people and 2 groups biblioteca_babel barry structural_bioinformatics McCammon
	Characterizing the Role of Ensemble Modulation in Mutation-Induced Changes in Binding Affinity [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Anthony Manson, Steven T. Whitten, Josephine C. Ferreon, Robert O. Fox, Vincent J. Hilser posted to allostery protein-ligand_interactions by sobolevnrm to the group baker-group on 2009-04-28 12:22:44 as
	Dynamical networks in tRNA:protein complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6620-6625. by Anurag Sethi, John Eargle, Alexis A. Black, Zaida Luthey-Schulten posted to allostery graph_theory nucleic_acids protein-nucleic_acid_interactions by sobolevnrm to the group baker-group on 2009-04-23 12:31:29 as along with 4 people and 1 group anuragsethi jeargle AbnerCYH jmccammon McCammon
	Extracting the multiscale backbone of complex weighted networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6483-6488. by M. Ãngeles Serrano, MariÃ¡n BoguÃ±Ã¡, Alessandro Vespignani posted to allostery graph_theory multiscale systems_biology by sobolevnrm to the group baker-group on 2009-04-23 12:30:54 as along with 9 people rdiaz tomt21 edws rsantana trfield pinney deanmalmgren kevinchannon kshundyak
	Linear response theory in dihedral angle space for protein structural change upon ligand binding [My Copy] Journal of Computational Chemistry, Vol. 30, No. 16. (2009), pp. 2602-2608. by Satoshi Omori, Sotaro Fuchigami, Mitsunori Ikeguchi, Akinori Kidera posted to allostery protein-ligand_interactions quasiharmonic_models by sobolevnrm to the group baker-group on 2009-04-20 12:35:29 as along with 2 people barry RamuAnandakrishnan
	Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (17 April 2009), e1000360. by Zheng Yang, Peter Májek, Ivet Bahar posted to allostery quasiharmonic_models by sobolevnrm to the group baker-group on 2009-04-20 12:33:47 as along with 2 people and 1 group barry jmccammon McCammon
	Binding induced conformational changes of proteins correlate with their intrinsic fluctuations: A case study of antibodies [My Copy] BMC Structural Biology, Vol. 7 (17 May 2007), 31. by Ozlem Keskin posted to allostery quasiharmonic_models by sobolevnrm to the group baker-group on 2009-04-03 12:49:07 as along with 4 people skywalkerus02 aqeel choonpeng medic0747
	Probing the Regulatory Domain Interface of D-3-Phosphoglycerate Dehydrogenase with Engineered Tryptophan Residues [My Copy] J. Biol. Chem., Vol. 273, No. 35. (28 August 1998), pp. 22389-22394. by Gregory A. Grant, Xiao L. Xu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:09:25 as
	The Contribution of Adjacent Subunits to the Active Sites of D-3-Phosphoglycerate Dehydrogenase [My Copy] J. Biol. Chem., Vol. 274, No. 9. (26 February 1999), pp. 5357-5361. by Gregory A. Grant, Sung J. Kim, Xiao L. Xu, Zhiqin Hu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:09:18 as
	The relationship between effector binding and inhibition of activity in D-3-phosphoglycerate dehydrogenase [My Copy] Protein Science, Vol. 8, No. 11. (1999), pp. 2501-2505. by Gregory A. Grant, Xiao L. Xu, Zhiqin Hu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:09:10 as
	Phosphate Ion Partially Relieves the Cooperativity of Effector Binding in d-3-Phosphoglycerate Dehydrogenase without Altering the Cooperativity of Inhibition† [My Copy] Biochemistry, Vol. 38, No. 50. (1 December 1999), pp. 16548-16552. by Gregory A. Grant, Xiao L. Xu, Zhiqin Hu, Angie R. Purvis posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:09:00 as
	Removal of the Tryptophan 139 Side Chain in Escherichia coli D-3-Phosphoglycerate Dehydrogenase Produces a Dimeric Enzyme without Cooperative Effects [My Copy] Archives of Biochemistry and Biophysics, Vol. 375, No. 1. (01 March 2000), pp. 171-174. by G. Grant posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:08:52 as
	Role of an Interdomain Gly-Gly Sequence at the Regulatory−Substrate Domain Interface in the Regulation of Escherichia coli. d-3-Phosphoglycerate Dehydrogenase† [My Copy] Biochemistry, Vol. 39, No. 24. (1 June 2000), pp. 7316-7319. by Gregory A. Grant, Xiao L. Xu, Zhiqin Hu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:08:44 as
	Specific Interactions at the Regulatory Domain-Substrate Binding Domain Interface Influence the Cooperativity of Inhibition and Effector Binding in Escherichia coliD-3-Phosphoglycerate Dehydrogenase [My Copy] J. Biol. Chem., Vol. 276, No. 2. (5 January 2001), pp. 1078-1083. by Gregory A. Grant, Zhiqin Hu, Xiao L. Xu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:08:36 as
	Amino Acid Residue Mutations Uncouple Cooperative Effects in Escherichia coliD-3-Phosphoglycerate Dehydrogenase [My Copy] J. Biol. Chem., Vol. 276, No. 21. (18 May 2001), pp. 17844-17850. by Gregory A. Grant, Zhiqin Hu, Xiao L. Xu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:08:28 as
	Cofactor Binding to Escherichia coliD-3-Phosphoglycerate Dehydrogenase Induces Multiple Conformations Which Alter Effector Binding [My Copy] J. Biol. Chem., Vol. 277, No. 42. (11 October 2002), pp. 39548-39553. by Gregory A. Grant, Zhiqin Hu, Xiao L. Xu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:06:50 as
	Hybrid Tetramers Reveal Elements of Cooperativity in Escherichia coliD-3-Phosphoglycerate Dehydrogenase [My Copy] J. Biol. Chem., Vol. 278, No. 20. (9 May 2003), pp. 18170-18176. by Gregory A. Grant, Zhiqin Hu, Xiao L. Xu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:04:58 as
	Methods for Analyzing Cooperativity in Phosphoglycerate Dehydrogenase [My Copy] In Energetics of Biological Macromolecules, Part E, Vol. 380 (2004), pp. 106-131. by T. Gran posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:04:50 as
	Multiconformational States in Phosphoglycerate Dehydrogenase†,‡ [My Copy] Biochemistry, Vol. 43, No. 12. (1 March 2004), pp. 3450-3458. by Jessica K. Bell, Gregory A. Grant, Leonard J. Banaszak posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:04:39 as
	Quantitative Relationships of Site to Site Interaction in Escherichia coli D-3-Phosphoglycerate Dehydrogenase Revealed by Asymmetric Hybrid Tetramers [My Copy] J. Biol. Chem., Vol. 279, No. 14. (2 April 2004), pp. 13452-13460. by Gregory A. Grant, Xiao L. Xu, Zhiqin Hu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:04:31 as
	D-3-Phosphoglycerate Dehydrogenase from Mycobacterium tuberculosis Is a Link between the Escherichia coli and Mammalian Enzymes [My Copy] J. Biol. Chem., Vol. 280, No. 15. (15 April 2005), pp. 14884-14891. by Sanghamitra Dey, Zhiqin Hu, Xiao L. Xu, James C. Sacchettini, Gregory A. Grant posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:04:23 as
	Crystal Structure of Mycobacterium tuberculosis D-3-Phosphoglycerate Dehydrogenase: EXTREME ASYMMETRY IN A TETRAMER OF IDENTICAL SUBUNITS [My Copy] J. Biol. Chem., Vol. 280, No. 15. (15 April 2005), pp. 14892-14899. by Sanghamitra Dey, Gregory A. Grant, James C. Sacchettini posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:04:15 as
	Vmax Regulation through Domain and Subunit Changes. The Active Form of Phosphoglycerate Dehydrogenase†,‡ [My Copy] Biochemistry, Vol. 44, No. 15. (1 April 2005), pp. 5763-5773. by James R. Thompson, Jessica K. Bell, Judy Bratt, Gregory A. Grant, Leonard J. Banaszak posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 12:04:07 as
	Identification of Amino Acid Residues Contributing to the Mechanism of Cooperativity in Escherichia coli d-3-Phosphoglycerate Dehydrogenase† [My Copy] Biochemistry, Vol. 44, No. 51. (1 December 2005), pp. 16844-16852. by Gregory A. Grant, Zhiqin Hu, Xiao L. Xu posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 11:59:06 as
	The Effect of Hinge Mutations on Effector Binding and Domain Rotation in Escherichia coli D-3-Phosphoglycerate Dehydrogenase [My Copy] J. Biol. Chem., Vol. 282, No. 25. (22 June 2007), pp. 18418-18426. by Sanghamitra Dey, Zhiqin Hu, Xiao L. Xu, James C. Sacchettini, Gregory A. Grant posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 11:58:54 as
	A Novel Mechanism for Substrate Inhibition in Mycobacterium tuberculosis D-3-Phosphoglycerate Dehydrogenase [My Copy] J. Biol. Chem., Vol. 282, No. 43. (26 October 2007), pp. 31517-31524. by Rodney L. Burton, Shawei Chen, Xiao L. Xu, Gregory A. Grant posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 11:58:45 as
	Structural Analysis of Substrate and Effector Binding in Mycobacterium tuberculosis d-3-Phosphoglycerate Dehydrogenase†‡ [My Copy] Biochemistry, Vol. 47, No. 32. (1 August 2008), pp. 8271-8282. by Sanghamitra Dey, Rodney L. Burton, Gregory A. Grant, James C. Sacchettini posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 11:58:37 as
	A Stopped Flow Transient Kinetic Analysis of Substrate Binding and Catalysis in Escherichia coli D-3-Phosphoglycerate Dehydrogenase [My Copy] J. Biol. Chem., Vol. 283, No. 44. (31 October 2008), pp. 29706-29714. by Rodney L. Burton, Jeremiah W. Hanes, Gregory A. Grant posted to allostery pgdh by sobolevnrm to the group baker-group on 2009-03-31 11:58:30 as
	Substrate Induced Population Shifts and Stochastic Gating in the PBCV-1 mRNA Capping Enzyme [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Robert V. Swift, Andrew J. Mccammon posted to allostery molecular_simulation by sobolevnrm to the group baker-group on 2009-03-27 11:56:40 as along with 1 person jrperillaj
	Modeling Signal Propagation Mechanisms and Ligand-Based Conformational Dynamics of the Hsp90 Molecular Chaperone Full-Length Dimer [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (20 March 2009), e1000323. by Giulia Morra, Gennady Verkhivker, Giorgio Colombo posted to allostery molecular_simulation by sobolevnrm to the group baker-group on 2009-03-27 11:56:09 as along with 1 person and 1 group barry McCammon
	Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3776-3781. by Sichun Yang, Nilesh K. Banavali, BenoÃ®t Roux posted to allostery enhanced_sampling molecular_simulation by sobolevnrm to the group baker-group on 2009-03-26 11:32:54 as along with 7 people and 1 group anuragsethi Diego_Prada bmduggan allmensch guhjy barry jmccammon McCammon
	Ligand-induced global transitions in the catalytic domain of protein kinase A [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3023-3028. by Changbong Hyeon, Patricia A. Jennings, Joseph A. Adams, JosÃ© N. Onuchic posted to allostery protein-ligand_interactions by sobolevnrm to the group baker-group on 2009-03-25 11:32:09 as along with 1 person anwazo
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted to allostery molecular_simulation by sobolevnrm to the group baker-group on 2009-03-24 12:22:46 as along with 9 people and 2 groups anuragsethi skywalkerus02 pablocarb AngelB eallain allmensch gane5h apaydin barry structural_bioinformatics McCammon
	Direct Observation of the Dynamic Process Underlying Allosteric Signal Transmission [My Copy] Journal of the American Chemical Society, Vol. 131, No. 8. (4 March 2009), pp. 3063-3068. by Sven Brüschweiler, Paul Schanda, Karin Kloiber, et al.Bernhard Brutscher, Georg Kontaxis, Robert Konrat, Martin Tollinger posted to allostery by sobolevnrm to the group baker-group on 2009-03-22 14:03:13 as along with 1 person barry
	Fluctuating enzyme and its biological functions: positive cooperativity without multiple states. [My Copy] The journal of physical chemistry. B, Vol. 113, No. 8. (26 February 2009), pp. 2225-2230. by H. Qian, P. Z. Shi posted to allostery kinetics by sobolevnrm to the group baker-group on 2009-03-20 11:49:53 as along with 2 people jjray carlosjavierna
	Allostery Wiring Diagrams in the Transitions that Drive the GroEL Reaction Cycle. [My Copy] Journal of molecular biology (24 December 2008) by Riina Tehver, Jie Chen, D Thirumalai posted to allostery quasiharmonic_models by sobolevnrm to the group baker-group on 2009-03-19 12:07:27 as along with 1 person and 1 group barry McCammon
	A network of dynamically conserved residues deciphers the motions of maltose transporter [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Suryani Lukman, Guy H. Grant posted to allostery bioinformatics by sobolevnrm to the group baker-group on 2009-03-18 11:27:30 as
	Allosteric Effects Potentiating the Release of the Second Fibrinopeptide A from Fibrinogen by Thrombin [My Copy] J. Biol. Chem., Vol. 277, No. 22. (24 May 2002), pp. 19367-19373. by John R. Shainoff, Gary B. Smejkal, Patricia M. Dibello, Shen-Shu Sung, Leslie A. Bush, Enrico Di Cera posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:56:15 as
	Kinetic Pathway for the Slow to Fast Transition of Thrombin. EVIDENCE OF LINKED LIGAND BINDING AT STRUCTURALLY DISTINCT DOMAINS [My Copy] J. Biol. Chem., Vol. 272, No. 48. (28 November 1997), pp. 30275-30282. by Ming-Tain Lai, Enrico Di Cera, Jules A. Shafer posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:53:18 as
	The spectrum of biomolecular states and motions [My Copy] HFSP Journal, Vol. 2, No. 6. (2008), pp. 307-313. by Joseph A. Hegler, Patrick Weinkam, Peter G. Wolynes posted to allostery energy_landscapes review by sobolevnrm to the group baker-group on 2009-03-13 11:26:03 as
	Identification of direct residue contacts in protein–protein interaction by message passing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 1. (6 January 2009), pp. 67-72. by Martin Weigt, Robert A. White, Hendrik Szurmant, James A. Hoch, Terence Hwa posted to allostery bioinformatics correlated_mutations structure by sobolevnrm to the group baker-group on 2009-03-05 12:34:10 as along with 6 people and 1 group orr cactus haisent sjcockell akraemer hmk KeatingJClub
	Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms. [My Copy] Molecular bioSystems, Vol. 5, No. 3. (March 2009), pp. 207-216. by C. J. Tsai, A. Del Sol, R. Nussinov posted to allostery review by sobolevnrm to the group baker-group on 2009-03-04 13:11:31 as along with 4 people and 2 groups anuragsethi flbarroso barry higueruelo structural_bioinformatics McCammon
	The natural mutation by deletion of Lys9 in the thrombin A-chain affects the p<i>K</i><sub>a</sub> value of catalytic residues, the overall enzyme's stability and conformational transitions linked to Na<sup>+</sup> binding [My Copy] FEBS Journal, Vol. 273, No. 1. (2006), pp. 159-169. by Raimondo Cristofaro, Andrea Carotti, Sepideh Akhavan, et al.Roberta Palla, Flora Peyvandi, Cosimo Altomare, Pier M. Mannucci posted to allostery pka thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:29:31 as
	Molecular Recognition by Thrombin. Role of the Slows→Fast Transition, Site-specific Ion Binding Energetics and Thermodynamic Mapping of Structural Components [My Copy] Journal of Molecular Biology, Vol. 235, No. 2. (13 January 1994), pp. 733-746. by Y. Ayala posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:29:16 as
	Effect of Na+ binding on the conformation, stability and molecular recognition properties of thrombin [My Copy] Biochemical Journal, Vol. 390, No. 2. (1 September 2005), 485. by Elisa Deâ dea, Vincenzo Deâ filippis, Filippo Lucatello, Roberta Frasson posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:26:17 as
	Conserved water molecules in the specificity pocket of serine proteases and the molecular mechanism of Na<SUP><FONT SIZE='-1'>+</FONT></SUP> binding [My Copy] Proteins: Structure, Function, and Genetics, Vol. 30, No. 1. (1998), pp. 34-42. by Maxwell M. Krem, Enrico Di Cera posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:25:06 as
	The Role of Glu192 in the Allosteric Control of the S2' and S3' Subsites of Thrombin [My Copy] J. Biol. Chem., Vol. 275, No. 2. (14 January 2000), pp. 809-816. by Pierre-Emmanuel Marque, Roberta Spuntarelli, Luiz Juliano, Martine Aiach, Bernard F. Le Bonniec posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:24:20 as
	Molecular mechanisms of thrombin function. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 53, No. 9. (September 1997), pp. 701-730. by E. Di Cera, Q. D. Dang, Y. M. Ayala posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:23:36 as
	The thrombin paradox [My Copy] Nature, Vol. 378, No. 6555. (23 November 1995), pp. 337-338. by John H. Griffin posted to allostery review thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:23:25 as
	Thermodynamics of Na+ binding to coagulation serine proteases [My Copy] Biophysical Chemistry, Vol. 90, No. 1. (15 March 2001), pp. 89-96. by N. Griffon posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:23:04 as

Note: You may cite this page as: http://www.citeulike.org/group/2608/tag/allostery

Result page: 1 2 3 4 5 Next

pgdh	42
review	39
molecular_simulation	32
dynamics	31
quasiharmonic_models	27
thrombin	26
protein	22
molecular_dynamics	18
binding	17
nmr	16
protein-ligand	16
structure	16
experiment	15
md_simulation	15
cooperativity	14
bioinformatics	12
cap	12
drug-discovery	12
protein-ligand_interactions	12
correlated_mutations	11
quasiharmonic-models_elastic-network_gnm_nma_pca_etc	11
data	10
alternatives	9
kinetics	9
gpcr	8
kinase	8
protein-domains	8
protein_dynamics	8
coarse_grain	7
model	7
multiscale	7
signaling	7
enhanced_sampling	6
graph_theory	6
hemoglobin	6
network	6
protein_structure	6
models	5
myosin	5
nma	5
nucleic_acids	5
population_shifts	5
usa	5
cap_dna	4
catalysis	4
clip2	4
conformation	4
conformational-fluctuations	4
conformational_flexibility	4
dimerization	4
electrostatics	4
energyflow	4
energylandscape	4
enzyme	4
experimental_methodology	4
freeenergy	4
function	4
hill	4
hpk	4
kinase-a	4
md	4
molecular-dynamics	4
protein-nucleic_acid_interactions	4
ras	4
solvation	4
structural_change	4
xray-crystal-structure	4
active_site	3
chaperone	3
chaperonin	3
clustering	3
conformational_changes	3
dhfr	3
dna	3
enm	3
entropy	3
folding	3
hot_spots	3
kinases	3
mdanalysis	3
molecular_dynamics_simulations	3
motor	3
mutation	3
mwc	3
nicotinic	3
pka	3
protein-interaction	3
protein-protein	3
protein_folding	3
proteins	3
qloop	3
receptor	3
stability	3
systems_biology	3
coarse-grained	2
fullatom	2
lysozyme	2
nov09	2
pfructokinase	2
structural_model	2

Group: baker-group - with tag allostery [at least 200 articles] Export

Related Tags