Group: baker-group - with tag clustering [27 articles] Export

Recent papers posted by members of the baker-group group with tag clustering

	Modeling dynamics from only output data [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 79, No. 5. (2009), 056208. by Evan Monroig, Kazuyuki Aihara, Yozo Fujino posted to clustering kinetics misc molecular_dynamics systems_biology by sobolevnrm to the group baker-group on 2009-05-11 12:27:10 as
	Distribution of averages in a correlated Gaussian medium as a tool for estimation of the cluster size distribution [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 79, No. 4. (2009), 041139. by S. V. Novikov, M. Van der Auweraer posted to clustering statistical_mechanics by sobolevnrm to the group baker-group on 2009-04-27 11:37:13 as
	Topological methods for exploring low-density states in biomolecular folding pathways [My Copy] The Journal of Chemical Physics, Vol. 130, No. 14. (2009), 144115. by Yuan Yao, Jian Sun, Xuhui Huang, et al.Gregory R. Bowman, Gurjeet Singh, Michael Lesnick, Leonidas J. Guibas, Vijay S. Pande, Gunnar Carlsson posted to clustering energy_landscapes nucleic_acids protein_folding by sobolevnrm to the group baker-group on 2009-04-17 13:03:39 as
	A roadmap of clustering algorithms: finding a match for a biomedical application [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 297-314. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michael Schroeder posted to bioinformatics clustering review by sobolevnrm to the group baker-group on 2009-03-25 11:33:04 as along with 14 people and 1 group jfr mhamidi eliasman Gorzomagnificent reyez brianb nuin m509396 jmeppley tmmurali tonamswish VGreiff barry svozil Bioinformatics
	Conformational Motions of HIV-1 Protease Identified Using Reversible Digitally Filtered Molecular Dynamics [My Copy] Journal of Chemical Theory and Computation, Vol. 0, No. 0. (0000) by Adrian P. Wiley, Sarah L. Williams, Jonathan W. Essex posted to clustering molecular_simulation quasiharmonic_models by sobolevnrm to the group baker-group on 2009-03-23 11:51:27 as
	StoneHinge: hinge prediction by network analysis of individual protein structures. [My Copy] Protein science : a publication of the Protein Society, Vol. 18, No. 2. (February 2009), pp. 359-371. by K. S. Keating, S. C. Flores, M. B. Gerstein, L. A. Kuhn posted to clustering enhanced_sampling quasiharmonic_models by sobolevnrm to the group baker-group on 2009-03-22 14:02:38 as along with 1 person and 1 group barry structural_bioinformatics
	Multiscale characterization of protein conformational ensembles [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2009), pp. 837-851. by Amarda Shehu, Lydia E. Kavraki, Cecilia Clementi posted to clustering quasiharmonic_models by sobolevnrm to the group baker-group on 2009-03-20 11:46:47 as along with 4 people and 2 groups anuragsethi okapi barry apaydin structural_bioinformatics McCammon
	Similarity Measures for Protein Ensembles [My Copy] PLoS ONE, Vol. 4, No. 1. (15 January 2009), e4203. by Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg posted to bioinformatics clustering molecular_simulation quasiharmonic_models structure by sobolevnrm to the group baker-group on 2009-03-18 11:22:13 as along with 8 people and 2 groups anuragsethi klexa apaydin gane5h barry jmccammon reyez biehl structural_bioinformatics McCammon
	Spectral methods in machine learning and new strategies for very large datasets. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 2. (13 January 2009), pp. 369-374. by M. A. Belabbas, P. J. Wolfe posted to clustering mathematics quasiharmonic_models by sobolevnrm to the group baker-group on 2009-03-13 11:25:33 as along with 3 people TRHvidsten rdiaz mhamada
	Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping [My Copy] Journal of Computational Chemistry, Vol. 30, No. 3. (2009), pp. 479-492. by Stephan Frickenhaus, Srinivasaraghavan Kannan, Martin Zacharias posted to clustering molecular_dynamics quasiharmonic_models by sobolevnrm to the group baker-group on 2009-03-12 12:31:39 as along with 3 people Diego_Prada scampos agrossfield
	A method for the analysis of domain movements in large biomolecular complexes [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Guru P. Poornam, Atsushi Matsumoto, Hisashi Ishida, Steven Hayward posted to clustering enhanced_sampling quasiharmonic_models by sobolevnrm to the group baker-group on 2009-02-28 21:52:03 as along with 1 person and 3 groups barry structural_bioinformatics McCammon Bioinformatics
	Support Vector Machines and Kernels for Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173. by Asa Ben-Hur, Cheng S. Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch posted to bioinformatics clustering mathematics review statistics by sobolevnrm to the group baker-group on 2009-02-06 11:52:06 as along with 32 people and 2 groups guhjy VGreiff tomhebbron ucbcjbm thegoose Zephyrus phoenixzxl winterschlaefer kshameer svozil mmartin jfr MarcoAlvarez Yanno Scis0000002 srp33 GustavoLacerda nuin rdiaz dakelley rschulz Borelli taguchi kristina bayesian chad_davis mdstobbe tny giovenko markchen druvus GeeSharpMinor Bioinformatics VisionLab
	Coarse-graining protein structures with local multivariate features from molecular dynamics. [My Copy] The journal of physical chemistry. B, Vol. 112, No. 44. (6 November 2008), pp. 14026-14035. by Zhiyong Zhang, Willy Wriggers posted to clustering multiscale quasiharmonic_models by sobolevnrm to the group baker-group on 2009-01-26 12:48:57 as along with 1 person choonpeng
	What is principal component analysis? [My Copy] Nature Biotechnology, Vol. 26, No. 3. (01 March 2008), pp. 303-304. by Markus Ringner posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc statistics by sobolevnrm to the group baker-group on 2008-04-28 11:33:49 as along with 70 people and 2 groups krapnik singhsh Jporci tnhh ruvido ucbcjbm daforerog Diego_Prada abellogin nguizard thegoose2 arsyed Zephyrus flips svozil VGreiff kaniko ssgong Yanno guhjy operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana fryanpan kengg rvosa dekay23 adacier hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici FAB-lab Bioinformatics
	Laplacian spectra as a diagnostic tool for network structure and dynamics [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 77, No. 3. (2008) by Patrick N. Mcgraw, Michael Menzinger posted to clustering graph_theory mathematics by sobolevnrm to the group baker-group on 2008-03-05 11:49:33 as
	New resampling method for evaluating stability of clusters [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Irina G. Dresen, Tanja Boes, Johannes Huesing, Markus Neuhaeuser, Karl H. Joeckel posted to clustering statistics by sobolevnrm to the group baker-group on 2008-02-22 12:15:10 as along with 7 people and 1 group ghattem Dori2008 derwisch RamuAnandakrishnan jfr guhjy aviad_work SIMR bioinformatics
	Quantification of intra- and inter-cluster relations in nonstationary and noisy data [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 77, No. 1. (2008) by Christian Rummel posted to clustering quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-19 12:41:24 as
	Diffusion maps, spectral clustering and reaction coordinates of dynamical systems [My Copy] ArXiv Mathematics e-prints (March 2005) by B. Nadler, S. Lafon, R. R. Coifman, I. G. Kevrekidis posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:23:15 as along with 2 people kb j_vinals
	Diffusion Maps, Spectral Clustering and Eigenfunctions of Fokker-Planck operators [My Copy] (6 Jun 2005) by Boaz Nadler, Stephane Lafon, Ronald R. Coifman, Ioannis G. Kevrekidis posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:22:37 as
	Diffusion maps, spectral clustering and reaction coordinates of dynamical systems [My Copy] Applied and Computational Harmonic Analysis In Diffusion Maps and Wavelets, Vol. 21, No. 1. (July 2006), pp. 113-127. by Boaz Nadler, Stephane Lafon, Ronald R. Coifman, Ioannis G. Kevrekidis posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 16:15:44 as along with 1 person tg1w
	Diffusion maps [My Copy] Applied and Computational Harmonic Analysis In Diffusion Maps and Wavelets, Vol. 21, No. 1. (July 2006), pp. 5-30. by Ronald R. Coifman, Stephane Lafon posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 16:09:52 as along with 1 person baueru
	Non-linear independent component analysis with diffusion maps [My Copy] Applied and Computational Harmonic Analysis, Vol. In Press, Corrected Proof by Amit Singer, Ronald R. Coifman posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 16:06:54 as
	Geometric diffusions as a tool for harmonic analysis and structure definition of data: Diffusion maps [My Copy] Proceedings of the National Academy of Sciences, Vol. 102, No. 21. (24 May 2005), pp. 7426-7431. by R. R. Coifman, S. Lafon, A. B. Lee, et al.M. Maggioni, B. Nadler, F. Warner, S. W. Zucker posted to bioinformatics clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 15:54:49 as along with 1 person kb
	Hierarchical tree snipping: clustering guided by prior knowledge [My Copy] Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3335-3342. by Dikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif posted to bioinformatics clustering by sobolevnrm to the group baker-group on 2008-01-14 12:47:36 as along with 2 people nklee carlk
	Molecular Similarity Based on Atomic Electrostatic Potential [My Copy] J. Phys. Chem. A (6 October 2007) by N. Sadlej-Sosnowska posted to bioinformatics clustering electrostatics by sobolevnrm to the group baker-group on 2007-10-22 12:24:15 as
	Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms [My Copy] Journal of Chemical Theory and Computation, Vol. 3, No. 6. (1 November 2007), pp. 2312-2334. by Jianyin Shao, Stephen W. Tanner, Nephi Thompson, Thomas E. Cheatham posted to clustering molecular_simulation by sobolevnrm to the group baker-group on 2007-10-22 12:18:38 as along with 10 people and 2 groups karinaecomp anuragsethi Diego_Prada scampos oteri barry daevans LamBras allmensch GermanErlenkamp Structural Biology Group TorVergata structural_bioinformatics
	An information-theoretic framework for resolving community structure in complex networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America (in press) by M. Rosvall, C. T. Bergstrom posted to quasiharmonic-models_elastic-network_gnm_nma_pca_etc mathematics clustering by sobolevnrm to the group baker-group on 2007-05-25 14:37:08 as

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classification	179
networks	166
algorithm	152
microarray	122
graph	117
bioinformatics	111
network	93
data	87
similarity	86
ir	85
data-mining	84
fmri	83
statistics	78
review	76
mining	71
analysis	65
machine_learning	64
self-organization	63
spectral	62
swarm_intelligence	62
collective_computing	59
complex_systems	59
adaptive_computation	58
ant_colony_systems	58
artificial_intelligence	58
artificial_life	58
collective_intelligence	58
collective_systems	58
distributed_computing	58
hierarchical	58
stigmergy	58
swarms	58
evaluation	57
web	54
software	53
visualization	53
expression	52
search	52
som	52
document	50
cytometry	49
tagging	49
learning	47
community	44
algorithms	43
fuzzy	43
gene	43
k-means	42
sensor-networks	42
structure	42
ensemble	41
protein	41
survey	41
time_series	41
scoc	40
pca	39
bayesian	38
information	37
spatial	37
segmentation	36
cluster	35
unsupervised	35
graphs	34
machine-learning	34
model	34
image	32
methodology	32
cancer	31
evolution	29
protein_structure	29
folksonomy	28
semi-supervised	28
sequence	27
subspace	27
text	27
gene-expression	26
nmf	26
em	25
kmeans	25
method	25
methods	25
nlp	25
ontology	25
semantic	25
summarization	25
systems	25
astrophysics	24
kernel	24
prediction	24
quasiharmonic_models	24
data_mining	23
database	23
feature_selection	23
fnak	23
fuzzy_modeling	23
health	23
modularity	23
recommender	23
text_mining	23
validation	23

Group: baker-group - with tag clustering [27 articles] Export

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