Group: baker-group - with tag database [88 articles] Export

Recent papers posted by members of the baker-group group with tag database

	AmiGO: online access to ontology and annotation data. [My Copy] Bioinformatics (Oxford, England) (25 November 2008) by Seth Carbon, Amelia Ireland, Christopher J J. Mungall, et al.Shengqiang Shu, Brad Marshall, Suzanna Lewis, , posted to bioinformatics database ontology software by sobolevnrm to the group baker-group on 2009-03-18 11:22:35 as along with 13 people and 1 group fgibson ilyashl jfr jm12 allysonlister mitko dswan ykadi natstreet ientb druvus guhjy dullhunk Bioinformatics
	OPM: Orientations of Proteins in Membranes database [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 623-625. by Mikhail A. Lomize, Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg posted to biomembranes database protein-membraneinteractions software by sobolevnrm to the group baker-group on 2009-03-04 13:04:38 as
	Interesting Structures: Education and Outreach at the RCSB Protein Data Bank [My Copy] PLoS Biology, Vol. 6, No. 5. (1 May 2008), e117. by Christine Zardecki posted to database structure teaching by sobolevnrm to the group baker-group on 2008-07-25 11:50:16 as along with 1 person reyez
	Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data [My Copy] Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 379-386. by Catherine Kehl, Andrew M. Simms, Rudesh D. Toofanny, Valerie Daggett posted to bioinformatics database molecular_dynamics by sobolevnrm to the group baker-group on 2008-07-10 11:58:23 as
	Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations [My Copy] Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 369-377. by Andrew M. Simms, Rudesh D. Toofanny, Catherine Kehl, Noah C. Benson, Valerie Daggett posted to bioinformatics database molecular_dynamics by sobolevnrm to the group baker-group on 2008-07-10 11:56:38 as
	Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations [My Copy] Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 353-368. by David A. Beck, Amanda L. Jonsson, Dustin R. Schaeffer, et al.Kathryn A. Scott, Ryan Day, Rudesh D. Toofanny, Darwin O. Alonso, Valerie Daggett posted to bioinformatics database molecular_dynamics protein_folding by sobolevnrm to the group baker-group on 2008-07-10 11:55:39 as
	PDBML: the representation of archival macromolecular structure data in XML [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 988-992. by John Westbrook, Nobutoshi Ito, Haruki Nakamura, Kim Henrick, Helen M. Berman posted to bioinformatics database structure by sobolevnrm to the group baker-group on 2008-05-05 21:23:40 as along with 3 people walshtp neils chad_davis
	CHARMM-GUI: A web-based graphical user interface for CHARMM [My Copy] Journal of Computational Chemistry (in press) by S. Jo, T. Kim, V. G. Iyer, W. Im posted to database electrostatics molecular_simulation software by sobolevnrm to the group baker-group on 2008-04-28 11:28:35 as
	STRALCP structure alignment-based clustering of proteins [My Copy] Nucl. Acids Res., Vol. 35, No. 22. (3 December 2007), e150. by Adam Zemla, Brian Geisbrecht, Jason Smith, et al.Marisa Lam, Bonnie Kirkpatrick, Mark Wagner, Tom Slezak, Carol E. Zhou posted to bioinformatics database structure by sobolevnrm to the group baker-group on 2008-02-09 23:18:39 as
	The caCORE Software Development Kit: streamlining construction of interoperable biomedical information services. [My Copy] BMC Med Inform Decis Mak, Vol. 6 (2006) by J. Phillips, R. Chilukuri, G. Fragoso, D. Warzel, P. A. Covitz posted to bioinformatics database nanotech sccne by sobolevnrm to the group baker-group on 2008-01-31 20:03:34 as along with 2 people beanformer jfr
	Enhanced performance in prediction of protein active sites with THEMATICS and support vector machines [My Copy] Protein Sci, Vol. 17, No. 2. (1 February 2008), pp. 333-341. by Wenxu Tong, Ronald J. Williams, Ying Wei, Leonel F. Murga, Jaeju Ko, Mary J. Ondrechen posted to bioinformatics database software structure by sobolevnrm to the group baker-group on 2008-01-29 12:28:06 as
	STITCH: interaction networks of chemicals and proteins [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D684-688. by Michael Kuhn, Christian von Mering, Monica Campillos, Lars J. Jensen, Peer Bork posted to bioinformatics database protein-ligand_interactions by sobolevnrm to the group baker-group on 2008-01-24 12:53:09 as along with 9 people medic0747 mitko Cortel guhjy balicea massivemayhem bootsy larsjuhljensen higueruelo
	DrugBank: a knowledgebase for drugs, drug actions and drug targets. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), gkm958. by David S. Wishart, Craig Knox, An Chi C. Guo, et al.Dean Cheng, Savita Shrivastava, Dan Tzur, Bijaya Gautam, Murtaza Hassanali posted to bioinformatics database drug_design by sobolevnrm to the group baker-group on 2008-01-03 12:27:55 as along with 8 people sjcockell ipark-kaist bertelsen daforerog Scis0000002 ajaymalik guhjy dullhunk
	Mining experimental evidence of molecular function claims from the literature. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 23. (1 December 2007), pp. 3232-3240. by Colleen E. Crangle, J. Michael Cherry, Eurie L. Hong, Alex Zbyslaw posted to bioinformatics database by sobolevnrm to the group baker-group on 2007-12-26 23:21:45 as along with 3 people daforerog guhjy balicea
	FunSimMat: a comprehensive functional similarity database [My Copy] Nucl. Acids Res. (11 October 2007), gkm806. by Andreas Schlicker, Mario Albrecht posted to bioinformatics database by sobolevnrm to the group baker-group on 2007-12-12 12:44:19 as along with 2 people guhjy sgoetz
	PDB Improvement Starts with Data Deposition [My Copy] Science, Vol. 317, No. 5835. (2007), pp. 195-6. by R. P. Joosten, G. Vriend posted to structure database bioinformatics by sobolevnrm to the group baker-group on 2007-07-15 22:17:37 as
	Ontology development for biological systems: immunology [My Copy] Bioinformatics, Vol. 23, No. 7. (2007), pp. 913-5. by A. D. Diehl, J. A. Lee, R. H. Scheuermann, J. A. Blake posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:37:08 as
	Sustainable databases [My Copy] Nature Cell Biology, Vol. 8, No. 12. (2006) posted to funding database by sobolevnrm to the group baker-group on 2007-05-25 14:33:55 as
	BioSimGrid: towards a worldwide repository for biomolecular simulations [My Copy] Organic & Biomolecular Chemistry, Vol. 2 (2004), pp. 3219-21. by K. Tai, S. Murdock, B. Wu, et al.M. H. Ng, S. Johnston, H. Fanghor, S. J. Cox, P. Jeffreys, J. W. Essex, M. S. P. Sansom posted to molecular_simulation database by sobolevnrm to the group baker-group on 2007-05-25 14:23:16 as
	Flexible Structural Neighborhoodâa database of protein structural similarities and alignments [My Copy] Nucleic Acids Research, Vol. 34 (2006), pp. D277-D280. by Z. Li, Y. Ye, A. Godzik posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:19:26 as
	PPD v1.0âan integrated, web-accessible database of experimentally determined protein pKa values [My Copy] Nucleic Acids Research, Vol. 34 (2006), pp. D199-D203. by C. P. Toseland, H. Mcsparron, M. N. Davies, D. R. Flower posted to solvation electrostatics database by sobolevnrm to the group baker-group on 2007-05-25 14:19:26 as
	STRING: known and predicted proteinâprotein associations, integrated and transferred across organisms [My Copy] Nucleic Acids Research, Vol. 33, No. S1. (2005), pp. D433-D437. by C. von Mering, L. J. Jensen, B. Snel, et al.S. D. Hooper, M. Krupp, M. Foglierini, N. Jouffre, M. A. Huynen, P. Bork posted to database correlated_mutations bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:18:43 as
	Prolinks: a database of protein functional linkages derived from coevolution [My Copy] Genome Biology, Vol. 5, No. 5. (2004) by P. M. Bowers, M. Pellegrini, M. J. Thompson, J. Fierro, T. O. Yeates, D. Eisenberg posted to database correlated_mutations bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:18:43 as
	Pfam: A comprehensive database of protein domain families based on seed alignments [My Copy] Proteins, Vol. 28, No. 3. (1997), pp. 405-20. by E. L. L. Sonnhammer, S. R. Eddy, R. Durbin posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:18:04 as
	iGNM: a database of protein functional motions based on Gaussian Network Model [My Copy] Bioinformatics, Vol. 21, No. 13. (2005), pp. 2978-87. by L. W. Yang, X. Liu, C. J. Jursa, et al.M. Holliman, A. J. Rader, H. A. Karimi, I. Bahar posted to quasiharmonic-models_elastic-network_gnm_nma_pca_etc database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:18:04 as
	SOAP version 1.2 [My Copy] (2003) by Xml posted to database by sobolevnrm to the group baker-group on 2007-05-25 14:15:42 as
	The ASTRAL Compendium in 2004 [My Copy] Nucleic Acids Research, Vol. 32 (2004), pp. D189-D192. by J. M. Chandonia, G. Hon, N. S. Walker, et al.L. Lo Conte, P. Koehl, M. Levitt, S. E. Brenner posted to structure database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:15:42 as
	The Gene Ontology (GO) database and informatics resource [My Copy] Nucleic Acids Research, Vol. 32 (2004), pp. D258-D261. by Gene O. Consortium posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:15:20 as
	Chemical Entitites of Biological Interest2005 [My Copy] (2005) by European B. Institute posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:15:20 as
	The KEGG resource for deciphering the genome [My Copy] Nucleic Acids Research, Vol. 32 (2004), pp. D277-D280. by M. Kanehisa, S. Goto, S. Kawashima, Y. Okuno, M. Hattori posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:15:20 as
	UniProt: the Universal Protein knowledgebase [My Copy] Nucleic Acids Research, Vol. 32 (2004), pp. D115-D119. by R. Apweiler, A. Bairoch, C. H. Wu, et al.W. C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, M. J. Martin, D. A. Natale, C. O'Donovan, N. Redaschi, L. S. L. Yeh posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:15:20 as
	PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids [My Copy] Nucleic Acids Research, Vol. 33 (2005), pp. D266-D268. by R. A. Laskowski, V. V. Chistyakov, J. M. Thornton posted to structure database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:15:20 as
	Enzyme Supplement 5 [My Copy] FEBS Journal, Vol. 264, No. 2. (1999), pp. 610-50. by N. C. Iubmb posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:15:20 as
	Analysis of Catalytic Residues in Enzyme Active Sites [My Copy] Journal of Molecular Biology, Vol. 324, No. 1. (2002), pp. 105-21. by G. J. Bartlett, C. T. Porter, N. Borkakoti, J. M. Thornton posted to structure database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:15:19 as
	MSDsite: A database search and retrieval system for the analysis and viewing of bound ligands and active sites [My Copy] Proteins, Vol. 58, No. 1. (2004), pp. 190-9. by A. Golovin, D. Dimitropoulos, T. Oldfield, A. Rachedi, K. Henrick posted to structure database by sobolevnrm to the group baker-group on 2007-05-25 14:15:19 as
	Databases for Protein-Ligand Complexes [My Copy] Biological Crystallography Online, Vol. 54, No. 1. (1998), pp. 1178-82. by M. Hendlich posted to structure database by sobolevnrm to the group baker-group on 2007-05-25 14:15:19 as
	Inference of Protein Function from Protein Structure [My Copy] Structure, Vol. 13, No. 1. (2005), pp. 121-30. by D. Pal, D. Eisenberg posted to structure database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:15:05 as
	PDBSite: a database of the 3D structure of protein functional sites [My Copy] Nucleic Acids Research, Vol. 33 (2005), pp. D183-D187. by V. Ivanisenko, S. S. Pintus, D. A. Grigorovich, N. A. Kolchanov posted to structure database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:14:50 as
	PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures [My Copy] Nucleic Acids Research, Vol. 33 (2005), pp. D238-D241. by J. M. Shin, D. H. Cho posted to structure database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:14:50 as
	Reactome: a knowledgebase of biological pathways [My Copy] Nucleic Acids Research, Vol. 33 (2005), pp. D428-D432. by Joshi G. Tope, M. Gillespie, I. Vastrik, et al.P. D'Eustachio, E. Schmidt, B. de Bono, B. Jassal, G. R. Gopinath, G. R. Wu, L. Matthews, S. Lewis, E. Birney, L. Stein posted to systems_biology database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:14:50 as
	Organelle DB: a cross-species database of protein localization and function [My Copy] Nucleic Acids Research, Vol. 33 (2005), pp. D598-D604. by N. Wiwatwattana, A. Kumar posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:14:50 as
	SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome [My Copy] Bioinformatics, Vol. 20, No. 14. (2004), pp. 2312-4. by T. J. Dolinsky, P. M. J. Burgers, K. Karplus, N. A. Baker posted to structure_prediction database by sobolevnrm to the group baker-group on 2007-05-25 14:13:09 as
	Ligand Depot: a data warehouse for ligands bound to macromolecules [My Copy] Bioinformatics, Vol. 20, No. 13. (2004), pp. 2153-5. by Z. Feng, L. Chen, H. Maddula, et al.O. Akcan, R. Oughtred, H. M. Berman, J. Westbrook posted to structure database by sobolevnrm to the group baker-group on 2007-05-25 14:13:09 as
	The PDBbind Database: Collection of Binding Affinities for Protein-Ligand Complexes with Known Three-Dimensional Structures [My Copy] Journal of Medicinal Chemistry, Vol. 47, No. 12. (2004), pp. 2977-80. by R. Wang, X. Fang, Y. Lu, S. Wang posted to database by sobolevnrm to the group baker-group on 2007-05-25 14:09:50 as
	RAG: RNA-As-Graphs databaseâconcepts, analysis, and features [My Copy] Bioinformatics, Vol. 20, No. 8. (2004), pp. 1285-91. by H. H. Gan, D. Fera, J. Zorn, et al.N. Shiffeldrim, M. Tang, U. Laserson, N. Kim, T. Schlick posted to nucleic_acids database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:09:50 as
	Toward Consistent Assignment of Structural Domains in Proteins [My Copy] Journal of Molecular Biology, Vol. 339, No. 3. (2004), pp. 647-78. by S. Veretnik, P. E. Bourne, N. N. Alexandrov, I. N. Shindyalov posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:09:50 as
	The Pfam protein families database [My Copy] Nucleic Acids Res, Vol. 32, No. 1. (2004), pp. D138-41. by A. Bateman, L. Coin, R. Durbin, et al.R. D. Finn, V. Hollich, Griffiths S. Jones, A. Khanna, M. Marshall, S. Moxon, E. L. Sonnhammer, D. J. Studholme, C. Yeats, S. R. Eddy posted to database bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 13:57:26 as
	EMBOSS: the European Molecular Biology Open Software Suite [My Copy] Trends Genet, Vol. 16, No. 6. (2000), pp. 276-7. by P. Rice, I. Longden, A. Bleasby posted to database by sobolevnrm to the group baker-group on 2007-05-25 13:55:43 as
	GeneSilico protein structure prediction meta-server [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3305-7. by M. A. Kurowski, J. M. Bujnicki posted to structure_prediction database by sobolevnrm to the group baker-group on 2007-05-25 13:55:02 as
	RPFOLD : Recognition of protein fold from sequence and predicted secondary structure using standard sequence searching methods; Fifth Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP5) [My Copy] (2002) by G. P. S. Raghava posted to structure_prediction software database by sobolevnrm to the group baker-group on 2007-05-25 13:55:02 as

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bioinformatics	236
protein	189
structure	150
annotation	100
software	99
distributed	95
vldb	86
xml	78
data	76
interaction	75
genomics	71
icde	71
microarray	70
genome	69
binding	67
microrna	65
sigmod	65
domain	62
replication	58
mirna	55
2008	54
review	52
query	51
sequence	51
algorithm	50
2004	49
2007	49
search	48
2005	47
evolution	47
expression	45
gene	42
rna	42
design	40
pathway	40
data-mining	39
human	39
resource	39
analysis	38
ontology	38
pathways	38
integration	37
protein-protein	36
2006	35
classic	35
scalability	34
performance	33
web	33
classification	32
networks	32
alignment	31
index	30
tools	30
algorithms	29
data-integration	29
databases	29
interactions	29
ppi	29
bacteria	28
protein-ligand	28
relational	28
service	28
tool	28
prediction	27
cancer	26
ncrna	26
selection	26
versioning	26
concurrency	25
management	25
plant	25
proteomics	25
semantic	25
collection	24
network	24
systems	24
clustering	23
data_integration	22
embl	22
model	22
uncertaindb	22
visualization	22
chemical	21
function	21
hmm	21
system	21
yeast	21
data_mining	20
drug	20
join	20
proteome	20
est	19
fault-tolerance	19
genetics	19
information	19
motif	19
pdb	19
proj_assembly	19
compression	18
target	18

Group: baker-group - with tag database [88 articles] Export

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