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Group: baker-group - with tag mathematics [458 articles]

Recent papers posted by members of the baker-group group with tag mathematics
  • An iterative boundary potential method for the infinite domain Poisson problem with interior Dirichlet boundaries
    Journal of Computational Physics, Vol. 227, No. 16. (10 August 2008), pp. 7917-7928.
    by GH Miller
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-08 12:02:17 as read
  • Local spectral time splitting method for first- and second-order partial differential equations
    Journal of Computational Physics, Vol. 206, No. 2. (1 July 2005), pp. 727-780.
    by Sining Yu, Shan Zhao, GW Wei
    posted to molecular_dynamics mathematics kinetics by sobolevnrm to the group baker-group on 2008-07-01 03:10:54 as read
  • On the fictitious-domain and interpolation formulations of the matched interface and boundary (MIB) method
    Journal of Computational Physics, Vol. 219, No. 1. (20 November 2006), pp. 228-246.
    by YC Zhou, GW Wei
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-01 02:39:39 as read
  • High order matched interface and boundary method for elliptic equations with discontinuous coefficients and singular sources
    Journal of Computational Physics, Vol. 213, No. 1. (20 March 2006), pp. 1-30.
    by YC Zhou, Shan Zhao, Michael Feig, GW Wei
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-01 02:37:16 as read
  • High-order FDTD methods via derivative matching for Maxwell's equations with material interfaces
    Journal of Computational Physics, Vol. 200, No. 1. (10 October 2004), pp. 60-103.
    by Shan Zhao, GW Wei
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-01 02:33:13 as read
  • Matched interface and boundary (MIB) method for elliptic problems with sharp-edged interfaces
    Journal of Computational Physics, Vol. 224, No. 2. (10 June 2007), pp. 729-756.
    by Sining Yu, Yongcheng Zhou, GW Wei
    posted to solvation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-07-01 02:31:14 as read
  • A Level Set Formulation for the Solution of the Dirichlet Problem for Hamilton--Jacobi Equations
    SIAM Journal on Mathematical Analysis, Vol. 24, No. 5. (1993), pp. 1145-1152.
    by Stanley Osher
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:26:27 as read
  • Fronts propagating with curvature-dependent speed: algorithms based on Hamilton-Jacobi formulations
    J. Comput. Phys., Vol. 79, No. 1. (November 1988), pp. 12-49.
    by Stanley Osher, James A Sethian
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:24:41 as read along with 2 people gerardotp kutabar
  • Nonlinear total variation based noise removal algorithms
    (1992), pp. 259-268.
    by Leonid I Rudin, Stanley Osher, Emad Fatemi
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:21:35 as ** along with 1 person derinb
  • Discrete surface modelling using partial differential equations
    Computer Aided Geometric Design, Vol. 23, No. 2. (February 2006), pp. 125-145.
    by Guoliang Xu, Qing Pan, Chandrajit L Bajaj
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:19:16 as read
  • A general framework for low level vision
    Image Processing, IEEE Transactions on, Vol. 7, No. 3. (1998), pp. 310-318.
    by N Sochen, R Kimmel, R Malladi
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:17:06 as read along with 1 person derinb
  • Evolution, Implementation, and Application of Level Set and Fast Marching Methods for Advancing Fronts
    Journal of Computational Physics, Vol. 169, No. 2. (20 May 2001), pp. 503-555.
    by JA Sethian
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:15:08 as read
  • 3D Curves Reconstruction Based on Deformable Models
    Journal of Mathematical Imaging and Vision, Vol. 18, No. 3. (21 May 2003), pp. 211-223.
    by Catalina Sbert, Andreas F Solé
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:12:20 as read
  • Subjective Surfaces: A Geometric Model for Boundary Completion
    International Journal of Computer Vision, Vol. 46, No. 3. (1 February 2002), pp. 201-221.
    by A Sarti, R Malladi, JA Sethian
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:10:29 as read
  • Level Set Methods: An Overview and Some Recent Results
    Journal of Computational Physics, Vol. 169, No. 2. (20 May 2001), pp. 463-502.
    by Stanley Osher, Ronald P Fedkiw
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:08:08 as read
  • A direct method for solving an anisotropic mean curvature flow of plane curves with an external force
    Mathematical Methods in the Applied Sciences, Vol. 27, No. 13. (2004), pp. 1545-1565.
    by Karol Mikula, Daniel &sbreve;ev&cbreve;ovi&cbreve;
    posted to mathematics by sobolevnrm to the group baker-group on 2008-07-01 02:01:56 as read
  • Analysis of a fully discrete finite element method for the phase field model and approximation of its sharp interface limits
    Mathematics of Computation, Vol. 73 (2004), pp. 541-567.
    by X Feng, A Prohl
    posted to mathematics by sobolevnrm to the group baker-group on 2008-06-30 15:48:01 as read
  • The minimal molecular surface
    (20 Oct 2006)
    by PW Bates, GW Wei, Shan Zhao
    posted to solvation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-06-30 15:42:08 as read
  • Analytical molecular surface calculation
    Journal of Applied Crystallography, Vol. 16, No. 5. (Oct 1983), pp. 548-558.
    by ML Connolly
    posted to solvation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-06-30 12:50:46 as read along with 1 person sithmein
  • Exact Solutions for Kinetic Models of Macromolecular Dynamics
    J. Phys. Chem. B, Vol. 112, No. 19. (15 May 2008), pp. 6025-6044.
    by YR Chemla, JR Moffitt, C Bustamante
    posted to mathematics kinetics by sobolevnrm to the group baker-group on 2008-06-26 12:01:41 as read
  • An interlacing theorem for reversible Markov chains
    Journal of Physics A: Mathematical and Theoretical, Vol. 41, No. 21. (2008), 212002.
    by Robert Grone, Karl H Hoffmann, Peter Salamon
    posted to mathematics kinetics by sobolevnrm to the group baker-group on 2008-06-20 11:36:58 as read
  • Connecting Atomistic-to-Continuum Coupling and Domain Decomposition
    Multiscale Modeling & Simulation, Vol. 7, No. 1. (2008), pp. 362-380.
    by Michael L Parks, Pavel B Bochev, Richard B Lehoucq
    posted to multiscale mechanics mathematics by sobolevnrm to the group baker-group on 2008-06-16 12:19:46 as read
  • The Block-P3M algorithm
    Computer Physics Communications, Vol. 179, No. 1-3. (July 2008), pp. 46-50.
    by JW Eastwood
    posted to molecular_simulation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-06-07 15:27:27 as read
  • Coarse graining of master equations with fast and slow states
    The Journal of Chemical Physics, Vol. 128, No. 15. (2008)
    by Simone Pigolotti, Angelo Vulpiani
    posted to statistical_mechanics mathematics kinetics by sobolevnrm to the group baker-group on 2008-05-22 11:56:49 as read
  • Analytical Approximation for the Generalized Laplace Equation with Step Function Coefficient
    SIAM Journal on Applied Mathematics, Vol. 68, No. 5. (2008), pp. 1268-1281.
    by RF Sviercoski, CL Winter, AW Warrick
    posted to mathematics electrostatics by sobolevnrm to the group baker-group on 2008-05-14 12:00:34 as read
  • Quasi Monte Carlo-based isotropic distribution of gradient directions for improved reconstruction quality of 3D EPR imaging
    Journal of Magnetic Resonance, Vol. 184, No. 2. (February 2007), pp. 236-245.
    by Rizwan Ahmad, Yuanmu Deng, Deepti S Vikram, Bradley Clymer, Parthasarathy Srinivasan, Jay L Zweier, Periannan Kuppusamy
    posted to visualization mathematics imagining by sobolevnrm to the group baker-group on 2008-05-12 17:59:05 as read
  • Rapid approximation to molecular surface area via the use of Boolean logic and look-up tables
    Journal of Computational Chemistry, Vol. 14, No. 3. (1993), pp. 349-352.
    by SM Le Grand, Jr Merz
    posted to solvation molecular_simulation mathematics electrostatics by sobolevnrm to the group baker-group on 2008-05-12 17:54:03 as read
  • Numerical Recipes: The Art of Scientific Computing
    (01 August 2007)
    by William H Press, Saul A Teukolsky, William T Vetterling, Brian P Flannery
    posted to statistics review mathematics by sobolevnrm to the group baker-group on 2008-04-29 12:15:42 as read along with 9 people diancu ansobol mshafiei 6rheology mmeteo harish Zaphod seana OndrejMarsalek
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to statistics quasiharmonic-models_elastic-network_gnm_nma_pca_etc mathematics clustering by sobolevnrm to the group baker-group on 2008-04-28 11:33:49 as read along with 50 people and 2 groups rrbarb HugoMarcelo tharris rsantana kengg laharrin chrissp100 xingxu dekay23 rvosa i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu FAB-lab Bioinformatics
  • Feature-preserving adaptive mesh generation for molecular shape modeling and simulation
    Journal of Molecular Graphics and Modelling, Vol. In Press, Corrected Proof
    by Zeyun Yu, Michael J Holst, Yuhui Cheng, Mccammon
    posted to visualization mathematics by sobolevnrm to the group baker-group on 2008-04-24 15:11:15 as read
  • Laplacian spectra as a diagnostic tool for network structure and dynamics
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 77, No. 3. (2008)
    by Patrick N Mcgraw, Michael Menzinger
    posted to clustering graph_theory mathematics by sobolevnrm to the group baker-group on 2008-03-05 11:49:33 as read
  • Theory and Simulation of Diffusion-Controlled Michaelis-Menten Kinetics for a Static Enzyme in Solution
    J. Phys. Chem. B (26 January 2008)
    by S Park, N Agmon
    posted to diffusion kinetics mathematics by sobolevnrm to the group baker-group on 2008-02-26 11:51:21 as read
  • A new minimization protocol for solving nonlinear Poisson–Boltzmann mortar finite element equation
    BIT Numerical Mathematics, Vol. 47, No. 4. (4 December 2007), pp. 853-871.
    by Dexuan Xie, Shuzi Zhou
    posted to electrostatics finite_element mathematics by sobolevnrm to the group baker-group on 2008-02-18 12:52:38 as read
  • Diffusion maps, spectral clustering and reaction coordinates of dynamical systems
    ArXiv Mathematics e-prints (March 2005)
    by B Nadler, S Lafon, RR Coifman, IG Kevrekidis
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:23:15 as ***** along with 1 person kb
  • Diffusion Maps, Spectral Clustering and Eigenfunctions of Fokker-Planck operators
    (6 Jun 2005)
    by Boaz Nadler, Stephane Lafon, Ronald R Coifman, Ioannis G Kevrekidis
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 21:22:37 as *****
  • Diffusion maps, spectral clustering and reaction coordinates of dynamical systems
    Applied and Computational Harmonic Analysis, Vol. 21, No. 1. (July 2006), pp. 113-127.
    by Boaz Nadler, Stephane Lafon, Ronald R Coifman, Ioannis G Kevrekidis
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 16:15:44 as read
  • Diffusion maps
    Applied and Computational Harmonic Analysis, Vol. 21, No. 1. (July 2006), pp. 5-30.
    by Ronald R Coifman, Stephane Lafon
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 16:09:52 as read along with 1 person baueru
  • Non-linear independent component analysis with diffusion maps
    Applied and Computational Harmonic Analysis, Vol. In Press, Corrected Proof
    by Amit Singer, Ronald R Coifman
    posted to clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 16:06:54 as read
  • Geometric diffusions as a tool for harmonic analysis and structure definition of data: Diffusion maps
    Proceedings of the National Academy of Sciences, Vol. 102, No. 21. (24 May 2005), pp. 7426-7431.
    by RR Coifman, S Lafon, AB Lee, M Maggioni, B Nadler, F Warner, SW Zucker
    posted to bioinformatics clustering mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-01 15:54:49 as read along with 1 person kb
  • Immersed-Interface Finite-Element Methods for Elliptic Interface Problems with Nonhomogeneous Jump Conditions
    SIAM Journal on Numerical Analysis, Vol. 46, No. 1. (2008), pp. 472-495.
    by Yan Gong, Bo Li, Zhilin Li
    posted to electrostatics mathematics by sobolevnrm to the group baker-group on 2008-01-30 18:45:51 as read
  • Adaptive finite element approximation of multiphysics problems
    Communications in Numerical Methods in Engineering, Vol. 9999, No. 9999. (2007), n/a.
    by Mats G Larson, Fredrik Bengzon
    posted to mathematics multiscale by sobolevnrm to the group baker-group on 2008-01-30 12:31:17 as read
  • Pattern vectors from algebraic graph theory
    Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. 27, No. 7. (2005), pp. 1112-1124.
    by RC Wilson, ER Hancock, Bin Luo
    posted to bioinformatics graph_theory mathematics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-01-24 12:53:27 as read along with 1 person bigbossman
  • On a conjecture regarding the synchronization in an array of linearly coupled dynamical systems
    Circuits and Systems I: Fundamental Theory and Applications, IEEE Transactions on [see also Circuits and Systems I: Regular Papers, IEEE Transactions on], Vol. 43, No. 2. (1996), pp. 161-165.
    by Chai W Wu, LO Chua
    posted to graph_theory mathematics by sobolevnrm to the group baker-group on 2008-01-23 14:26:47 as read
  • Application of graph theory to the synchronization in an array of coupled nonlinear oscillators
    Circuits and Systems I: Fundamental Theory and Applications, IEEE Transactions on [see also Circuits and Systems I: Regular Papers, IEEE Transactions on], Vol. 42, No. 8. (1995), pp. 494-497.
    by Chai W Wu, LO Chua
    posted to graph_theory mathematics by sobolevnrm to the group baker-group on 2008-01-23 14:15:03 as read
  • A particle-particle, particle-density algorithm for the calculation of electrostatic interactions of particles with slablike geometry
    The Journal of Chemical Physics, Vol. 127, No. 22. (2007)
    by Alireza S Ghasemi, Alexey Neelov, Stefan Goedecker
    posted to electrostatics mathematics molecular_dynamics molecular_simulation by sobolevnrm to the group baker-group on 2008-01-22 12:44:43 as read along with 1 person softsimu
  • Construction of effective free energy landscape from single-molecule time series
    Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19297-19302.
    by Akinori Baba, Tamiki Komatsuzaki
    posted to mathematics molecular_simulation quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-01-10 12:46:56 as read along with 6 people hsekiguc hmk zwang cactus Diego_Prada arnaudriegert
  • A mathematical tool for exploring the dynamics of biological networks
    Proceedings of the National Academy of Sciences (21 November 2007), 0709955104.
    by Paolo E Barbano, Marina Spivak, Marc Flajolet, Angus C Nairn, Paul Greengard, Leslie Greengard
    posted to mathematics systems_biology by sobolevnrm to the group baker-group on 2008-01-10 12:32:48 as read along with 9 people tmmurali cjeans zwang cactus forgoston lenov sdbneuro mdramirez phoenixzxl
  • A nonlinear elasticity model of macromolecular conformational change induced by electrostatic forces
    Journal of Mathematical Analysis and Applications, Vol. 340, No. 1. (1 April 2008), pp. 135-164.
    by YC Zhou, Michael Holst, Andrew J Mccammon
    posted to electrostatics mathematics mechanics by sobolevnrm to the group baker-group on 2008-01-03 14:16:50 as read
  • Generating confidence intervals on biological networks
    BMC Bioinformatics, Vol. 8 (30 November 2007), 467.
    by Thomas Thorne, Michael PH Stumpf
    posted to bioinformatics mathematics statistics by sobolevnrm to the group baker-group on 2008-01-03 12:44:27 as read along with 6 people and 1 group jyuh stajich grahamc shigepong laughcry zwang Berkeley Mycology
  • On anti-portfolio effects in science and technology with application to reaction kinetics, chemical synthesis, and molecular biology
    Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18398-18403.
    by Marcel O Vlad, Alexandru D Corlan, Vlad T Popa, John Ross
    posted to mathematics systems_biology by sobolevnrm to the group baker-group on 2007-12-21 12:32:30 as read along with 1 person RamuAnandakrishnan
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