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Group: baker-group - with tag protein-protein_interactions [153 articles]

Recent papers posted by members of the baker-group group with tag protein-protein_interactions
  • Ion Specific Protein Assembly and Hydrophobic Surface Forces
    Physical Review Letters, Vol. 100, No. 25. (2008)
    by Mikael Lund, Pavel Jungwirth, Clifford E Woodward
    posted to solvation protein-protein_interactions nonpolar by sobolevnrm to the group baker-group on 2008-07-21 21:01:25 as read along with 1 person mikaellund
  • An Electrostatic Steering Mechanism of Cdc42 Recognition by Wiskott-Aldrich Syndrome Proteins
    Molecular Cell, Vol. 20, No. 2. (28 October 2005), pp. 313-324.
    by Lars Hemsath, Radovan Dvorsky, Dennis Fiegen, Marie-France Carlier, Mohammad R Ahmadian
    posted to protein-protein_interactions kinetics electrostatics diffusion by sobolevnrm to the group baker-group on 2008-07-01 02:55:17 as read along with 1 person mikaellund
  • A Continuum Model for Protein-Protein Interactions: Application to the Docking Problem
    Journal of Molecular Biology, Vol. 250, No. 2. (7 July 1995), pp. 258-275.
    by Richard M Jackson, Michael J Sternberg
    posted to solvation protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2008-06-30 15:37:33 as read along with 1 person cjeans
  • Cation-pi interactions in protein-protein interfaces
    Proteins: Structure, Function, and Bioinformatics, Vol. 59, No. 2. (2005), pp. 231-239.
    by Peter B Crowley, Adel Golovin
    posted to protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2008-06-30 12:55:24 as read along with 1 person bicko
  • Principles of Protein-Protein Interactions: What are the Preferred Ways For Proteins To Interact?
    Chemical Reviews, Vol. 108, No. 4. (2008), pp. 1225-1244.
    by O Keskin, A Gursoy, B Ma, R Nussinov
    posted to review protein-protein_interactions by sobolevnrm to the group baker-group on 2008-04-27 14:58:32 as read
  • Molecular docking of four [beta]-amyloid1-42 fragments on the [alpha]7 nicotinic receptor: delineating the binding site of the A[beta] peptides
    Biochemical and Biophysical Research Communications, Vol. 323, No. 4. (29 October 2004), pp. 1191-1196.
    by Michel L Espinoza-Fonseca
    posted to ion_channels pdb2pqr protein-protein_interactions by sobolevnrm to the group baker-group on 2008-04-17 19:46:51 as read
  • Intramolecular and Intermolecular Interactions of Protein Kinase B Define Its Activation In Vivo
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e95.
    by Véronique Calleja, Damien Alcor, Michel Laguerre, Jongsun Park, Borivoj Vojnovic, Brian A Hemmings, Julian Downward, Peter J Parker, Banafshé Larijani
    posted to electrostatics protein-ligand_interactions protein-protein_interactions structure by sobolevnrm to the group baker-group on 2008-04-16 21:15:19 as read
  • Visualization of transient encounter complexes in protein–protein association
    Nature (15 October 2006)
    by Chun Tang, Junji Iwahara, Marius G Clore
    posted to electrostatics protein-protein_interactions by sobolevnrm to the group baker-group on 2008-04-16 21:08:41 as read along with 1 person chad_davis
  • Viral-Induced Self-Assembly of Magnetic Nanoparticles Allows the Detection of Viral Particles in Biological Media
    J. Am. Chem. Soc., Vol. 125, No. 34. (27 August 2003), pp. 10192-10193.
    by JM Perez, FJ Simeone, Y Saeki, L Josephson, R Weissleder
    posted to ccne imaging nanotech protein-protein_interactions by sobolevnrm to the group baker-group on 2008-03-28 11:04:42 as ** along with 1 person ml115
  • Magnetic relaxation switches capable of sensing molecular interactions
    Nat Biotech, Vol. 20, No. 8. (2002), pp. 816-820.
    by Manuel J Perez, Lee Josephson, Terrence O'Loughlin, Dagmar Hogemann, Ralph Weissleder
    posted to ccne imaging nanotech protein-protein_interactions by sobolevnrm to the group baker-group on 2008-03-28 10:41:02 as read along with 1 person ml115
  • Use of Magnetic Nanoparticles as Nanosensors to Probe for Molecular Interactions
    ChemBioChem, Vol. 5, No. 3. (2004), pp. 261-264.
    by Manuel J Perez, Lee Josephson, Ralph Weissleder
    posted to ccne imaging nanotech protein-protein_interactions by sobolevnrm to the group baker-group on 2008-03-28 10:40:41 as read along with 1 person ml115
  • Dimerization Affects Collective Dynamics of Triosephosphate Isomerase
    Biochemistry, Vol. 47, No. 5. (5 February 2008), pp. 1358-1368.
    by S Cansu, P Doruker
    posted to protein-protein_interactions quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-18 12:25:46 as read
  • Protein-protein docking by simulating the process of association subject to biochemical constraints
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Domantas Motiejunas, Razif Gabdoulline, Ting Wang, Anna Feldman-Salit, Tim Johann, Peter J Winn, Rebecca C Wade
    posted to molecular_simulation protein-protein_interactions by sobolevnrm to the group baker-group on 2008-02-18 12:22:20 as read
  • Designed Protein-Protein Association
    Science, Vol. 319, No. 5860. (11 January 2008), pp. 206-209.
    by Dirk Grueninger, Nora Treiber, Mathias O Ziegler, Jochen W Koetter, Monika-Sarah Schulze, Georg E Schulz
    posted to protein_engineering protein-protein_interactions by sobolevnrm to the group baker-group on 2008-02-18 12:21:23 as read along with 5 people higueruelo cjeans zwang cactus biomcgary
  • The origin of protein interactions and allostery in colocalization
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 983-990.
    by John Kuriyan, David Eisenberg
    posted to allostery bioinformatics protein-protein_interactions structure by sobolevnrm to the group baker-group on 2008-01-22 12:31:35 as read along with 4 people higueruelo cjeans mingzhi phoenixzxl
  • Localizing frustration in native proteins and protein assemblies
    Proceedings of the National Academy of Sciences (5 December 2007), 0709915104.
    by Diego U Ferreiro, Joseph A Hegler, Elizabeth A Komives, Peter G Wolynes
    posted to bioinformatics molecular_simulation protein-ligand_interactions protein-protein_interactions structure by sobolevnrm to the group baker-group on 2008-01-21 12:49:28 as read along with 2 people cjeans cactus
  • Coarse-grained models for simulations of multi-protein complexes: Application to ubiquitin binding
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Young C Kim, Gerhard Hummer
    posted to multiscale protein-protein_interactions by sobolevnrm to the group baker-group on 2008-01-03 12:50:28 as read along with 3 people and 2 groups barry iantunbridge mikaellund structural_bioinformatics Bioinformatics
  • Monte Carlo refinement of rigid-body protein docking structures with backbone displacement and side-chain optimization
    Protein Sci, Vol. 16, No. 12. (1 December 2007), pp. 2716-2725.
    by Stephan Lorenzen, Yang Zhang
    posted to protein-protein_interactions structure_prediction by sobolevnrm to the group baker-group on 2007-12-21 12:26:27 as read
  • Protein-protein binding is often associated with changes in protonation state
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Aaron C Mason, Jan H Jensen
    posted to electrostatics pka protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2007-12-17 12:40:08 as read along with 4 people and 2 groups barry bicko chad_davis RamuAnandakrishnan McCammon structural_bioinformatics
  • Optimization of electrostatic interactions in protein-protein complexes.
    Biophys J (10 August 2007)
    by Kelly Brock, Kemper Talley, Kacey Coley, Petras Kundrotas, Emil Alexov
    posted to electrostatics protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2007-11-01 12:01:01 as read along with 1 person choonpeng
  • Energy minimization in low-frequency normal modes to efficiently allow for global flexibility during systematic protein-protein docking
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Andreas May, Martin Zacharias
    posted to quasiharmonic-models_elastic-network_gnm_nma_pca_etc protein-protein_interactions by sobolevnrm to the group baker-group on 2007-08-30 12:42:59 as read
  • Conformational entropy in molecular recognition by proteins
    Nature, Vol. 448, No. 7151. (2007), pp. 325-9.
    by KK Frederick, MS Marlow, KG Valentine, AJ Wand
    posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-07-19 13:30:05 as read along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • An automated decision-tree approach to predicting protein interaction hot spots
    Proteins (in press)
    by SJ Darnell, D Page, JC Mitchell
    posted to protein-protein_interactions bioinformatics by sobolevnrm to the group baker-group on 2007-06-18 13:08:48 as read
  • Hot spots - A review of the protein-protein interface determinant amino-acid residues
    Proteins (in press)
    by IS Moreira, PA Fernandes, MJ Ramos
    posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-06-11 13:10:03 as read
  • Protein--Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations
    Journal of Molecular Biology, Vol. 331, No. 1. (2003), pp. 281-99.
    by JJ Gray, S Moughon, C Wang, Schueler O Furman, B Kuhlman, CA Rohl, D Baker
    posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:37:06 as read
  • Water-mediated interaction at a protein--protein interface
    Chemical Physics, Vol. 307, No. 2-3. (2004), pp. 111-9.
    by T Ikura, Y Urakubo, N Ito
    posted to solvation protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:37:06 as read
  • Hydrophobic association of $α$-helices, steric dewetting, and enthalpic barriers to protein folding
    Proceedings of the National Academy of Sciences of the United States of America (in press)
    by JL Maccallum, MS Moghaddam, HS Chan, DP Tieleman
    posted to solvation protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:37:06 as read
  • Energy Landscape and Transition State of Protein-Protein Association
    Biophysical Journal, Vol. 92, No. 5. (2007), pp. 1486-502.
    by R Alsallaq, HX Zhou
    posted to protein-protein_interactions diffusion by sobolevnrm to the group baker-group on 2007-05-25 14:36:28 as read
  • Motifs for molecular recognition exploiting hydrophobic enclosure in proteinâligand binding
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 3. (2007), pp. 808-13.
    by T Young, R Abel, B Kim, BJ Berne, RA Friesner
    posted to solvation protein-protein_interactions protein-ligand_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:36:05 as read
  • Poisson-Boltzmann calculations of non-specific salt effects on protein-protein binding free energies
    Biophysical Journal (in press)
    by C Bertonati, B Honig, E Alexov
    posted to solvation protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:36:04 as read
  • Microtubule Stability Studied by Three-Dimensional Molecular Theory of Solvation
    Biophysical Journal, Vol. 92, No. 2. (2007), pp. 394-403.
    by P Drabik, S Gusarov, A Kovalenko
    posted to solvation protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:36:04 as read
  • Protein Interactions Studied by SAXS: Effect of Ionic Strength and Protein Concentration for BSA in Aqueous Solutions
    Journal of Physical Chemistry B (in press)
    by F Zhang, MWA Skoda, RMJ Jacobs, RA Martin, CM Martin, F Schreiber
    posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:35:46 as read
  • 3D Complex: A Structural Classification of Protein Complexes
    PLoS Computational Biology, Vol. 2, No. 11. (2006)
    by ED Levy, Pereira JB Leal, C Chothia, SA Teichmann
    posted to structure protein-protein_interactions bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:24:57 as read
  • Interaction energy decomposition in proteinâprotein association: A quantum mechanical study of barnaseâbarstar complex
    Biophysical Chemistry, Vol. 125, No. 1. (2007), pp. 221-36.
    by A Ababou, A van der Vaart, V Gogonea, Jr
    posted to quantum_mechanics protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:24:57 as read
  • Atomically Detailed Simulations of Concentrated Protein Solutions: The Effects of Salt, pH, Point Mutations, and Protein Concentration in Simulations of 1000-Molecule Systems
    Journal of the American Chemical Society, Vol. 128, No. 37. (2006), pp. 12098-110.
    by SR Mcguffee, AH Elcock
    posted to protein-protein_interactions molecular_dynamics by sobolevnrm to the group baker-group on 2007-05-25 14:23:19 as read
  • Electrostatic Properties of Protein-Protein Complexes
    Biophysical Journal, Vol. 91, No. 5. (2006), pp. 1724-36.
    by PJ Kundrotas, E Alexov
    posted to solvation protein-protein_interactions pka electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:23:18 as read
  • Electrostatic contribution to the binding stability of protein-protein complexes
    Proteins, Vol. 65, No. 1. (2006), pp. 87-102.
    by F Dong, HX Zhou
    posted to protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:23:17 as read
  • On the driving forces for protein-protein association
    Journal of Chemical Physics, Vol. 125 (2006)
    by Ben A Naim
    posted to statistical_mechanics solvation protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:23:17 as read
  • Effects of NaCl on the linkages between O2 binding and subunit assembly in human hemoglobin: titration of the quaternary enhancement effect
    Biophysical Chemistry, Vol. 64, No. 1-3. (1997), pp. 271-87.
    by ML Doyle, JM Holt, GK Ackers
    posted to solvation protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:23:17 as read
  • Salt-dependent monomerâdimer equilibrium of bovine Ã-lactoglobulin at pH 3
    Protein Science, Vol. 10, No. 11. (2001), pp. 2325-35.
    by K Sakurai, M Oobatake, Y Goto
    posted to solvation protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:23:17 as read
  • Mechanism of protein salting in and salting out by divalent cation salts: balance between hydration and salt binding
    Biochemistry, Vol. 23, No. 25. (1984), pp. 5912-23.
    by T Arakawa, SN Timasheff
    posted to solvation protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:23:17 as read
  • Salt Enhances Calmodulin-Target Interaction
    Biophysical Journal, Vol. 90, No. 8. (2006), pp. 2903-10.
    by I Andrã\copyright, T Kesvatera, B Jã¶nsson, S Linse
    posted to protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:23:17 as read
  • Flexibility and Conformational Entropy in Protein-Protein Binding
    Structure, Vol. 14, No. 4. (2006), pp. 683-93.
    by R Grã¼nberg, M Nilges, J Leckner
    posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:22:46 as read
  • Macromolecular crowding
    Current Biology, Vol. 16 (2006), pp. R269-R271.
    by AP Minton
    posted to solvation protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:22:45 as read
  • Conformational Transitions in Protein-Protein Association: Binding of Fasciculin-2 to Acetylcholinesterase
    Biophysical Journal, Vol. 90, No. 9. (2006), pp. 3280-7.
    by JM Bui, Z Radic, P Taylor, JA Mccammon
    posted to quasiharmonic-models_elastic-network_gnm_nma_pca_etc protein-protein_interactions acetylcholinesterase by sobolevnrm to the group baker-group on 2007-05-25 14:22:45 as read
  • Efficient Restraints for ProteinâProtein Docking by Comparison of Observed Amino Acid Substitution Patterns with those Predicted from Local Environment
    Journal of Molecular Biology, Vol. 357, No. 5. (2006), pp. 1669-82.
    by V Chelliah, TL Blundell, Fernã!'ndez J Recio
    posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:22:19 as read
  • Computational Analysis and Prediction of the Binding Motif and Protein Interacting Partners of the Abl SH3 Domain
    PLoS Computational Biology, Vol. 2, No. 1. (2006)
    by T Hou, K Chen, WA Mclaughlin, B Lu, W Wang
    posted to protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:19:28 as read
  • Phase Behavior of Mixtures of Oppositely Charged Nanoparticles: Heterogeneous Poisson-Boltzmann Cell Model Applied to Lysozyme and Succinylated Lysozyme
    Langmuir, Vol. 22, No. 3. (2006), pp. 1291-1300.
    by PM Biesheuvel, S Lindhoud, R de Vries, MAC Stuart
    posted to protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:19:28 as read
  • Contribution of Electrostatic Interactions, Compactness and Quaternary Structure to Protein Thermostability: Lessons from Structural Genomics of Thermotoga maritima
    Journal of Molecular Biology, Vol. 356, No. 2. (2006), pp. 547-57.
    by Robinson M Rechavi, A Alibã\copyrights, A Godzik
    posted to protein-protein_interactions electrostatics bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:19:28 as read
  • Experiment and theory for heterogeneous nucleation of protein crystals in a porous medium
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 3. (2006), pp. 597-601.
    by NE Chayen, E Saridakis, RP Sear
    posted to protein-protein_interactions experimental_methodology by sobolevnrm to the group baker-group on 2007-05-25 14:19:28 as read
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