Group: baker-group - with tag protein-protein_interactions [169 articles] Export

Recent papers posted by members of the baker-group group with tag protein-protein_interactions

	Applications of computational geometry to the molecular simulation of interfaces [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 79, No. 4. (2009), 046709. by Florencio B. Usabiaga, Daniel Duque posted to geometry protein-ligand_interactions protein-protein_interactions review structure by sobolevnrm to the group baker-group on 2009-04-23 12:30:13 as
	Sending signals dynamically. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 198-203. by Robert G. Smock, Lila M. Gierasch posted to protein-protein_interactions review systems_biology by sobolevnrm to the group baker-group on 2009-04-16 12:35:49 as along with 7 people guhjy kjell chica pablocarb biomcgary renatomilani hsekiguc
	Simulated x-ray scattering of protein solutions using explicit-solvent models [My Copy] The Journal of Chemical Physics, Vol. 130, No. 13. (2009), 134114. by Sanghyun Park, Jaydeep P. Bardhan, Benoît Roux, Lee Makowski posted to molecular_simulation protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2009-04-15 12:12:10 as along with 1 person agrossfield
	Confinement effects on the kinetics and thermodynamics of protein dimerization [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 14. (7 April 2009), pp. 5517-5522. by Wei Wang, Wei-Xin Xu, Yaakov Levy, E. Trizac, P. G. Wolynes posted to kinetics protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2009-04-15 12:10:40 as along with 2 people ARobson itmeson
	Uncovering the rules for protein-protein interactions from yeast genomic data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 10. (10 March 2009), pp. 3752-3757. by Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang posted to bioinformatics protein-protein_interactions by sobolevnrm to the group baker-group on 2009-03-26 11:32:28 as along with 8 people carlk guhjy AbnerCYH mariap3636 mstumpf grahamc zwang phoenixzxl
	Graphical models of protein-protein interaction specificity from correlated mutations and interaction data [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2 February 2009), pp. 911-929. by John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg posted to bioinformatics correlated_mutations protein-protein_interactions by sobolevnrm to the group baker-group on 2009-03-23 11:52:16 as along with 5 people and 1 group dfdong AliC qluo RebeccaHamer barry Orengo Group Journal Picks
	Fundamental Aspects of Protein−Protein Association Kinetics [My Copy] Chemical Reviews, Vol. 109, No. 3. (11 March 2009), pp. 839-860. by G. Schreiber, G. Haran, H. X. Zhou posted to diffusion kinetics protein-protein_interactions review by sobolevnrm to the group baker-group on 2009-03-20 11:51:02 as along with 10 people and 1 group anuragsethi barry sunhwan jmccammon willard kafuitay carlosjavierna sschurer hadesnumb paulschlesinger McCammon
	Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics, and composition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 3. (23 January 2009), pp. 677-692. by Benjamin Bouvier, Raik Grünberg, Michael Nilges, Frédéric Cazals posted to bioinformatics geometry protein-protein_interactions structure by sobolevnrm to the group baker-group on 2009-03-19 12:08:08 as along with 2 people richardbickerton higueruelo
	MM-PBSA Captures Key Role of Intercalating Water Molecules at a Protein−Protein Interface [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 2. (10 February 2009), pp. 422-429. by Sergio Wong, Rommie E. Amaro, Andrew J. Mccammon posted to electrostatics protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2009-03-19 12:07:18 as along with 1 person Lombardo_7
	Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 2. (10 February 2009), pp. 242-256. by Tamara Frembgen-Kesner, Adrian H. Elcock posted to diffusion protein-protein_interactions protein_folding solvation by sobolevnrm to the group baker-group on 2009-03-19 12:06:25 as along with 2 people and 1 group barry jmccammon McCammon
	Dynamics of protein-protein encounter: A Langevin equation approach with reaction patches [My Copy] The Journal of Chemical Physics, Vol. 129, No. 15. (2008) by Jakob Schluttig, Denitsa Alamanova, Volkhard Helms, Ulrich S. Schwarz posted to diffusion kinetics protein-protein_interactions by sobolevnrm to the group baker-group on 2009-03-12 12:33:01 as along with 3 people and 1 group anuragsethi barry jmccammon McCammon
	Simulations of a Protein Crystal: Explicit Treatment of Crystallization Conditions Links Theory and Experiment in the Streptavidin−Biotin Complex† [My Copy] Biochemistry, Vol. 47, No. 46. (18 November 2008), pp. 12065-12077. by David S. Cerutti, Isolde Le Trong, Ronald E. Stenkamp, Terry P. Lybrand posted to molecular_dynamics protein-protein_interactions by sobolevnrm to the group baker-group on 2009-02-20 13:09:26 as
	Chapter 4 Modeling Protein–Protein and Protein–Nucleic Acid Interactions: Structure, Thermodynamics, and Kinetics [My Copy] Annual Reports in Computational Chemistry, Vol. 4 (2008), pp. 67-87. by H. Zhou, S. Qin, H. Tjong posted to diffusion kinetics protein-nucleic_acid_interactions protein-protein_interactions review by sobolevnrm to the group baker-group on 2009-02-18 12:31:58 as along with 1 person and 1 group A_Coletta_Thesis Structural Biology Group TorVergata
	Multiple Protonation Equilibria in Electrostatics of Protein−Protein Binding [My Copy] J. Phys. Chem. B (25 October 2008) by Zofia Piłat, Jan M. Antosiewicz posted to electrostatics pka protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2009-02-03 12:41:59 as along with 2 people mikaellund paulschlesinger
	Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfaces. [My Copy] BMC Bioinformatics, Vol. 9 (21 October 2008), 448. by Salim Bougouffa, Jim Warwicker posted to nonpolar protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2009-01-30 13:05:12 as
	Reentrant Condensation of Proteins in Solution Induced by Multivalent Counterions [My Copy] Physical Review Letters, Vol. 101, No. 14. (2008) by F. Zhang, M. W. A. Skoda, R. M. J. Jacobs, et al.S. Zorn, R. A. Martin, C. M. Martin, G. F. Clark, S. Weggler, A. Hildebrandt, O. Kohlbacher, F. Schreiber posted to beyond_mean_field electrostatics protein-protein_interactions statistical_mechanics by sobolevnrm to the group baker-group on 2009-01-29 12:48:22 as along with 1 person mikaellund
	Ion Specific Protein Assembly and Hydrophobic Surface Forces [My Copy] Physical Review Letters, Vol. 100, No. 25. (2008) by Mikael Lund, Pavel Jungwirth, Clifford E. Woodward posted to nonpolar protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2008-07-21 21:01:25 as along with 1 person mikaellund
	An Electrostatic Steering Mechanism of Cdc42 Recognition by Wiskott-Aldrich Syndrome Proteins [My Copy] Molecular Cell, Vol. 20, No. 2. (28 October 2005), pp. 313-324. by Lars Hemsath, Radovan Dvorsky, Dennis Fiegen, Marie-France Carlier, Mohammad R. Ahmadian posted to diffusion electrostatics kinetics protein-protein_interactions by sobolevnrm to the group baker-group on 2008-07-01 02:55:17 as along with 1 person mikaellund
	A Continuum Model for Protein-Protein Interactions: Application to the Docking Problem [My Copy] Journal of Molecular Biology, Vol. 250, No. 2. (7 July 1995), pp. 258-275. by Richard M. Jackson, Michael J. Sternberg posted to electrostatics protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2008-06-30 15:37:33 as along with 1 person cjeans
	Cation-pi interactions in protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 59, No. 2. (2005), pp. 231-239. by Peter B. Crowley, Adel Golovin posted to electrostatics protein-protein_interactions by sobolevnrm to the group baker-group on 2008-06-30 12:55:24 as along with 1 person bicko
	Principles of Protein-Protein Interactions: What are the Preferred Ways For Proteins To Interact? [My Copy] Chemical Reviews, Vol. 108, No. 4. (2008), pp. 1225-1244. by O. Keskin, A. Gursoy, B. Ma, R. Nussinov posted to protein-protein_interactions review by sobolevnrm to the group baker-group on 2008-04-27 14:58:32 as
	Molecular docking of four [beta]-amyloid1-42 fragments on the [alpha]7 nicotinic receptor: delineating the binding site of the A[beta] peptides [My Copy] Biochemical and Biophysical Research Communications, Vol. 323, No. 4. (29 October 2004), pp. 1191-1196. by Michel L. Espinoza-Fonseca posted to ion_channels pdb2pqr protein-protein_interactions by sobolevnrm to the group baker-group on 2008-04-17 19:46:51 as
	Intramolecular and Intermolecular Interactions of Protein Kinase B Define Its Activation In Vivo [My Copy] PLoS Biology, Vol. 5, No. 4. (1 April 2007), e95. by Véronique Calleja, Damien Alcor, Michel Laguerre, et al.Jongsun Park, Borivoj Vojnovic, Brian A. Hemmings, Julian Downward, Peter J. Parker, Banafshé Larijani posted to electrostatics protein-ligand_interactions protein-protein_interactions structure by sobolevnrm to the group baker-group on 2008-04-16 21:15:19 as
	Visualization of transient encounter complexes in protein–protein association [My Copy] Nature (15 October 2006) by Chun Tang, Junji Iwahara, Marius G. Clore posted to electrostatics protein-protein_interactions by sobolevnrm to the group baker-group on 2008-04-16 21:08:41 as along with 2 people ras chad_davis
	Viral-Induced Self-Assembly of Magnetic Nanoparticles Allows the Detection of Viral Particles in Biological Media [My Copy] J. Am. Chem. Soc., Vol. 125, No. 34. (27 August 2003), pp. 10192-10193. by J. M. Perez, F. J. Simeone, Y. Saeki, L. Josephson, R. Weissleder posted to ccne imaging nanotech protein-protein_interactions by sobolevnrm to the group baker-group on 2008-03-28 11:04:42 as along with 1 person ml115
	Magnetic relaxation switches capable of sensing molecular interactions [My Copy] Nat Biotech, Vol. 20, No. 8. (2002), pp. 816-820. by Manuel J. Perez, Lee Josephson, Terrence O'Loughlin, Dagmar Hogemann, Ralph Weissleder posted to ccne imaging nanotech protein-protein_interactions by sobolevnrm to the group baker-group on 2008-03-28 10:41:02 as along with 1 person ml115
	Use of Magnetic Nanoparticles as Nanosensors to Probe for Molecular Interactions [My Copy] ChemBioChem, Vol. 5, No. 3. (2004), pp. 261-264. by Manuel J. Perez, Lee Josephson, Ralph Weissleder posted to ccne imaging nanotech protein-protein_interactions by sobolevnrm to the group baker-group on 2008-03-28 10:40:41 as along with 1 person ml115
	Dimerization Affects Collective Dynamics of Triosephosphate Isomerase [My Copy] Biochemistry, Vol. 47, No. 5. (5 February 2008), pp. 1358-1368. by S. Cansu, P. Doruker posted to protein-protein_interactions quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-02-18 12:25:46 as
	Protein-protein docking by simulating the process of association subject to biochemical constraints [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Domantas Motiejunas, Razif Gabdoulline, Ting Wang, et al.Anna Feldman-Salit, Tim Johann, Peter J. Winn, Rebecca C. Wade posted to molecular_simulation protein-protein_interactions by sobolevnrm to the group baker-group on 2008-02-18 12:22:20 as along with 1 person mikaellund
	Designed Protein-Protein Association [My Copy] Science, Vol. 319, No. 5860. (11 January 2008), pp. 206-209. by Dirk Grueninger, Nora Treiber, Mathias O. Ziegler, Jochen W. Koetter, Monika-Sarah Schulze, Georg E. Schulz posted to protein_engineering protein-protein_interactions by sobolevnrm to the group baker-group on 2008-02-18 12:21:23 as along with 6 people timg cjeans zwang cactus biomcgary higueruelo
	The origin of protein interactions and allostery in colocalization. [My Copy] Nature, Vol. 450, No. 7172. (13 December 2007), pp. 983-990. by John Kuriyan, David Eisenberg posted to allostery bioinformatics protein-protein_interactions structure by sobolevnrm to the group baker-group on 2008-01-22 12:31:35 as along with 7 people mittinatten yanjiang ynaito cjeans mingzhi phoenixzxl higueruelo
	Localizing frustration in native proteins and protein assemblies [My Copy] Proceedings of the National Academy of Sciences (5 December 2007), 0709915104. by Diego U. Ferreiro, Joseph A. Hegler, Elizabeth A. Komives, Peter G. Wolynes posted to bioinformatics molecular_simulation protein-ligand_interactions protein-protein_interactions structure by sobolevnrm to the group baker-group on 2008-01-21 12:49:28 as along with 2 people cjeans cactus
	Coarse-grained Models for Simulations of Multiprotein Complexes: Application to Ubiquitin Binding [My Copy] Journal of Molecular Biology, Vol. 375, No. 5. (01 February 2008), pp. 1416-1433. by Young C. Kim, Gerhard Hummer posted to multiscale protein-protein_interactions by sobolevnrm to the group baker-group on 2008-01-03 12:50:28 as along with 4 people and 2 groups okapi barry iantunbridge mikaellund structural_bioinformatics Bioinformatics
	Monte Carlo refinement of rigid-body protein docking structures with backbone displacement and side-chain optimization [My Copy] Protein Sci, Vol. 16, No. 12. (1 December 2007), pp. 2716-2725. by Stephan Lorenzen, Yang Zhang posted to protein-protein_interactions structure_prediction by sobolevnrm to the group baker-group on 2007-12-21 12:26:27 as
	Protein-protein binding is often associated with changes in protonation state [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Aaron C. Mason, Jan H. Jensen posted to electrostatics pka protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2007-12-17 12:40:08 as along with 6 people and 2 groups flbarroso onufriev csrocha bicko RamuAnandakrishnan barry structural_bioinformatics McCammon
	Optimization of electrostatic interactions in protein-protein complexes. [My Copy] Biophysical journal, Vol. 93, No. 10. (15 November 2007), pp. 3340-3352. by K. Brock, K. Talley, K. Coley, P. Kundrotas, E. Alexov posted to electrostatics protein-protein_interactions solvation by sobolevnrm to the group baker-group on 2007-11-01 12:01:01 as along with 4 people flbarroso timg dfgreen choonpeng
	Energy minimization in low-frequency normal modes to efficiently allow for global flexibility during systematic protein-protein docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Andreas May, Martin Zacharias posted to quasiharmonic-models_elastic-network_gnm_nma_pca_etc protein-protein_interactions by sobolevnrm to the group baker-group on 2007-08-30 12:42:59 as
	Conformational entropy in molecular recognition by proteins [My Copy] Nature, Vol. 448, No. 7151. (2007), pp. 325-9. by K. K. Frederick, M. S. Marlow, K. G. Valentine, A. J. Wand posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-07-19 13:30:05 as along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
	An automated decision-tree approach to predicting protein interaction hot spots [My Copy] Proteins (in press) by S. J. Darnell, D. Page, J. C. Mitchell posted to protein-protein_interactions bioinformatics by sobolevnrm to the group baker-group on 2007-06-18 13:08:48 as
	Hot spots - A review of the protein-protein interface determinant amino-acid residues [My Copy] Proteins (in press) by I. S. Moreira, P. A. Fernandes, M. J. Ramos posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-06-11 13:10:03 as
	Protein--Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations [My Copy] Journal of Molecular Biology, Vol. 331, No. 1. (2003), pp. 281-99. by J. J. Gray, S. Moughon, C. Wang, et al.Schueler O. Furman, B. Kuhlman, C. A. Rohl, D. Baker posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:37:06 as
	Water-mediated interaction at a protein--protein interface [My Copy] Chemical Physics, Vol. 307, No. 2-3. (2004), pp. 111-9. by T. Ikura, Y. Urakubo, N. Ito posted to solvation protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:37:06 as
	Hydrophobic association of $α$-helices, steric dewetting, and enthalpic barriers to protein folding [My Copy] Proceedings of the National Academy of Sciences of the United States of America (in press) by J. L. Maccallum, M. S. Moghaddam, H. S. Chan, D. P. Tieleman posted to solvation protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:37:06 as
	Energy Landscape and Transition State of Protein-Protein Association [My Copy] Biophysical Journal, Vol. 92, No. 5. (2007), pp. 1486-502. by R. Alsallaq, H. X. Zhou posted to protein-protein_interactions diffusion by sobolevnrm to the group baker-group on 2007-05-25 14:36:28 as
	Motifs for molecular recognition exploiting hydrophobic enclosure in proteinâligand binding [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 3. (2007), pp. 808-13. by T. Young, R. Abel, B. Kim, B. J. Berne, R. A. Friesner posted to solvation protein-protein_interactions protein-ligand_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:36:05 as
	Poisson-Boltzmann calculations of non-specific salt effects on protein-protein binding free energies [My Copy] Biophysical Journal (in press) by C. Bertonati, B. Honig, E. Alexov posted to solvation protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:36:04 as
	Microtubule Stability Studied by Three-Dimensional Molecular Theory of Solvation [My Copy] Biophysical Journal, Vol. 92, No. 2. (2007), pp. 394-403. by P. Drabik, S. Gusarov, A. Kovalenko posted to solvation protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:36:04 as
	Protein Interactions Studied by SAXS: Effect of Ionic Strength and Protein Concentration for BSA in Aqueous Solutions [My Copy] Journal of Physical Chemistry B (in press) by F. Zhang, M. W. A. Skoda, R. M. J. Jacobs, R. A. Martin, C. M. Martin, F. Schreiber posted to protein-protein_interactions by sobolevnrm to the group baker-group on 2007-05-25 14:35:46 as
	3D Complex: A Structural Classification of Protein Complexes [My Copy] PLoS Computational Biology, Vol. 2, No. 11. (2006) by E. D. Levy, Pereira J. B. Leal, C. Chothia, S. A. Teichmann posted to structure protein-protein_interactions bioinformatics by sobolevnrm to the group baker-group on 2007-05-25 14:24:57 as
	Interaction energy decomposition in proteinâprotein association: A quantum mechanical study of barnaseâbarstar complex [My Copy] Biophysical Chemistry, Vol. 125, No. 1. (2007), pp. 221-36. by A. Ababou, A. van der Vaart, V. Gogonea, Jr posted to quantum_mechanics protein-protein_interactions electrostatics by sobolevnrm to the group baker-group on 2007-05-25 14:24:57 as

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electrostatics	20
solvation	20
bioinformatics	10
diffusion	10
kinetics	10
structure	10
review	8
ccne	6
imaging	6
molecular_simulation	6
nanotech	6
protein-ligand_interactions	6
geometry	4
nonpolar	4
pka	4
dataset	3
network	3
protein_engineering	3
yeast	3
allostery	2
bacteria	2
beyond_mean_field	2
correlated_mutations	2
ion_channels	2
molecular_dynamics	2
multiscale	2
pdb2pqr	2
protein-nucleic_acid_interactions	2
protein_folding	2
quasiharmonic-models_elastic-network_gnm_nma_pca_etc	2
quasiharmonic_models	2
statistical_mechanics	2
structure_prediction	2
systems_biology	2
dna_repair	1
drug_target	1
evolution	1
hnrnp_k	1
human	1
interactome	1
protein_complexes	1
sh3	1
superoxide_dismutase	1
systems_biology_analysis	1

Group: baker-group - with tag protein-protein_interactions [169 articles] Export

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