Group: baker-group - with tag thrombin [132 articles] Export

Recent papers posted by members of the baker-group group with tag thrombin

	Na+ binding to meizothrombin desF1 [My Copy] Cellular and Molecular Life Sciences (CMLS), Vol. 65, No. 22. (1 November 2008), pp. 3688-3697. by M. Papaconstantinou, P. Gandhi, Z. Chen, A. Bah, E. Di Cera posted to thrombin by sobolevnrm to the group baker-group on 2009-05-28 12:32:19 as
	Comparative molecular modeling analysis ofÂ5-amidinoindole and benzamidine binding to thrombin and trypsin: specific H-bond formation contributes to high 5-amidinoindole potency and selectivity for thrombin and factor Xa [My Copy] Journal of Molecular Recognition, Vol. 12, No. 4. (July 1999), pp. 235-241. by Yasheen Zhou, Michael E. Johnson posted to protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:56:37 as
	Single amino acid substitutions dissociate fibrinogen-clotting and thrombomodulin-binding activities of human thrombin. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 88, No. 15. (1 August 1991), pp. 6775-6779. by Q. Y. Wu, J. P. Sheehan, M. Tsiang, S. R. Lentz, J. J. Birktoft, J. E. Sadler posted to thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:56:29 as
	Energetics of Thrombin−Thrombomodulin Interaction† [My Copy] Biochemistry, Vol. 36, No. 22. (1 June 1997), pp. 6674-6681. by Alessandro Vindigni, Christopher E. White, Elizabeth A. Komives, Enrico Di Cera posted to protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:56:22 as
	Allosteric Effects Potentiating the Release of the Second Fibrinopeptide A from Fibrinogen by Thrombin [My Copy] J. Biol. Chem., Vol. 277, No. 22. (24 May 2002), pp. 19367-19373. by John R. Shainoff, Gary B. Smejkal, Patricia M. Dibello, Shen-Shu Sung, Leslie A. Bush, Enrico Di Cera posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:56:15 as
	Replacement of thrombin residue G184 with Lys or Arg fails to mimic Na<SUP><FONT SIZE='-1'>+</FONT></SUP> binding [My Copy] Proteins: Structure, Function, and Genetics, Vol. 43, No. 3. (2001), pp. 315-318. by Dolly B. Roy, Thierry Rose, Enrico Di Cera posted to protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:55:58 as
	Three-dimensional Modeling of Thrombin-Fibrinogen Interaction [My Copy] J. Biol. Chem., Vol. 277, No. 21. (17 May 2002), pp. 18875-18880. by Thierry Rose, Enrico Di Cera posted to protein-ligand_interactions structure thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:53:59 as
	Substrate Recognition Drives the Evolution of Serine Proteases [My Copy] J. Biol. Chem., Vol. 277, No. 22. (24 May 2002), pp. 19243-19246. by Thierry Rose, Enrico Di Cera posted to thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:53:50 as
	The thrombin epitope recognizing thrombomodulin is a highly cooperative hot spot in exosite I. [My Copy] The Journal of biological chemistry, Vol. 277, No. 35. (30 August 2002), pp. 32015-32019. by A. O. Pineda, A. M. Cantwell, L. A. Bush, T. Rose, E. Di Cera posted to thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:53:41 as along with 1 person bicko
	Estimation of Binding Affinities for Selective Thrombin Inhibitors via Monte Carlo Simulations [My Copy] Journal of Medicinal Chemistry, Vol. 44, No. 7. (1 March 2001), pp. 1043-1050. by Albert C. Pierce, William L. Jorgensen posted to protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:53:34 as
	Structure-based design and synthesis of novel thrombin inhibitors based on phosphinic peptide mimetics [My Copy] Bioorganic & Medicinal Chemistry Letters, Vol. 9, No. 14. (19 July 1999), pp. 1957-1962. by M. Li posted to protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:53:27 as
	Kinetic Pathway for the Slow to Fast Transition of Thrombin. EVIDENCE OF LINKED LIGAND BINDING AT STRUCTURALLY DISTINCT DOMAINS [My Copy] J. Biol. Chem., Vol. 272, No. 48. (28 November 1997), pp. 30275-30282. by Ming-Tain Lai, Enrico Di Cera, Jules A. Shafer posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:53:18 as
	Dissecting substrate recognition by thrombin using the inactive mutant S195A. [My Copy] Biophysical chemistry, Vol. 100, No. 1-3. (2003), pp. 315-323. by M. M. Krem, E. Di Cera posted to thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:53:07 as
	Enzyme flexibility, solvent and 'weak' interactions characterize thrombin-ligand interactions: implications for drug design. [My Copy] Structure (London, England : 1993), Vol. 4, No. 11. (15 November 1996), pp. 1353-1362. by R. A. Engh, H. Brandstetter, G. Sucher, et al.A. Eichinger, U. Baumann, W. Bode, R. Huber, T. Poll, R. Rudolph, W. von der Saal posted to protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:52:47 as
	Site-Specific Thermodynamics: Understanding Cooperativity in Molecular Recognition [My Copy] Chemical Reviews, Vol. 98, No. 4. (1 June 1998), pp. 1563-1592. by Enrico Di Cera posted to review thrombin by sobolevnrm to the group baker-group on 2009-03-16 11:52:38 as
	Thermodynamic Investigation of Hirudin Binding to the Slow and Fast Forms of Thrombin: Evidence for Folding Transitions in the Inhibitor and Protease Coupled to Binding [My Copy] Journal of Molecular Biology, Vol. 253, No. 5. (10 November 1995), pp. 787-798. by Y. Ayala posted to thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:31:06 as
	Computational modelling of inhibitor binding to human thrombin [My Copy] European Journal of Pharmaceutical Sciences, Vol. 12, No. 4. (February 2001), pp. 441-446. by K. Ljungberg posted to protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:30:57 as
	The natural mutation by deletion of Lys9 in the thrombin A-chain affects the p<i>K</i><sub>a</sub> value of catalytic residues, the overall enzyme's stability and conformational transitions linked to Na<sup>+</sup> binding [My Copy] FEBS Journal, Vol. 273, No. 1. (2006), pp. 159-169. by Raimondo Cristofaro, Andrea Carotti, Sepideh Akhavan, et al.Roberta Palla, Flora Peyvandi, Cosimo Altomare, Pier M. Mannucci posted to allostery pka thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:29:31 as
	Molecular Recognition by Thrombin. Role of the Slows→Fast Transition, Site-specific Ion Binding Energetics and Thermodynamic Mapping of Structural Components [My Copy] Journal of Molecular Biology, Vol. 235, No. 2. (13 January 1994), pp. 733-746. by Y. Ayala posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:29:16 as
	Thrombin signalling and protease-activated receptors [My Copy] Nature, Vol. 407, No. 6801. (2000), pp. 258-264. by Shaun R. Coughlin posted to review thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:29:05 as
	Probing the Hirudin−Thrombin Interaction by Incorporation of Noncoded Amino Acids and Molecular Dynamics Simulation†,‡ [My Copy] Biochemistry, Vol. 41, No. 46. (1 November 2002), pp. 13556-13569. by Vincenzo De Filippis, Giorgio Colombo, Ilaria Russo, Barbara Spadari, Angelo Fontana posted to molecular_simulation thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:28:26 as
	Molecular dynamics simulations of thrombin inhibitors at the S' subsites of thrombin. [My Copy] Drug design and discovery, Vol. 12, No. 1. (July 1994), pp. 1-17. by S. Y. Yue, Y. Konishi posted to protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:28:14 as
	A Natural Prothrombin Mutant Reveals an Unexpected Influence of A-chain Structure on the Activity of Human alpha-Thrombin [My Copy] J. Biol. Chem., Vol. 279, No. 13. (26 March 2004), pp. 13035-13043. by Raimondo De Cristofaro, Sepideh Akhavan, Cosimo Altomare, Andrea Carotti, Flora Peyvandi, Pier M. Mannucci posted to structure thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:28:01 as
	Effect of Na+ binding on the conformation, stability and molecular recognition properties of thrombin [My Copy] Biochemical Journal, Vol. 390, No. 2. (1 September 2005), 485. by Elisa Deâ dea, Vincenzo Deâ filippis, Filippo Lucatello, Roberta Frasson posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:26:17 as
	Quantum and Molecular Dynamics Study for Binding of Macrocyclic Inhibitors to Human α-Thrombin [My Copy] Biophysical Journal, Vol. 92, No. 12. (15 June 2007), pp. 4244-4253. by E. Wu, Y. Mei, K. Han, J. Zhang posted to protein-ligand_interactions quantum_mechanics thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:25:35 as
	Conserved water molecules in the specificity pocket of serine proteases and the molecular mechanism of Na<SUP><FONT SIZE='-1'>+</FONT></SUP> binding [My Copy] Proteins: Structure, Function, and Genetics, Vol. 30, No. 1. (1998), pp. 34-42. by Maxwell M. Krem, Enrico Di Cera posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:25:06 as
	Ser214 Is Crucial for Substrate Binding to Serine Proteases [My Copy] J. Biol. Chem., Vol. 277, No. 43. (18 October 2002), pp. 40260-40264. by Maxwell M. Krem, Swati Prasad, Enrico Di Cera posted to thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:24:45 as
	The Role of Glu192 in the Allosteric Control of the S2' and S3' Subsites of Thrombin [My Copy] J. Biol. Chem., Vol. 275, No. 2. (14 January 2000), pp. 809-816. by Pierre-Emmanuel Marque, Roberta Spuntarelli, Luiz Juliano, Martine Aiach, Bernard F. Le Bonniec posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:24:20 as
	How do serine proteases really work? [My Copy] Biochemistry, Vol. 28, No. 9. (2 May 1989), pp. 3629-3637. by A. Warshel, G. Naray-Szabo, F. Sussman, J. K. Hwang posted to review thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:24:10 as
	The refined 1.9-A X-ray crystal structure of D-Phe-Pro-Arg chloromethylketone-inhibited human alpha-thrombin: structure analysis, overall structure, electrostatic properties, detailed active-site geometry, and structure-function relationships. [My Copy] Protein science : a publication of the Protein Society, Vol. 1, No. 4. (April 1992), pp. 426-471. by W. Bode, D. Turk, A. Karshikov posted to structure thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:23:49 as along with 2 people flbarroso pgasper
	Molecular mechanisms of thrombin function. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 53, No. 9. (September 1997), pp. 701-730. by E. Di Cera, Q. D. Dang, Y. M. Ayala posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:23:36 as
	The thrombin paradox [My Copy] Nature, Vol. 378, No. 6555. (23 November 1995), pp. 337-338. by John H. Griffin posted to allostery review thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:23:25 as
	Thermodynamics of Na+ binding to coagulation serine proteases [My Copy] Biophysical Chemistry, Vol. 90, No. 1. (15 March 2001), pp. 89-96. by N. Griffon posted to allostery thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:23:04 as
	Crystal structure of the thrombin mutant D221A/D222K: the Asp222:Arg187 ion-pair stabilizes the fast form [My Copy] Biophysical Chemistry, Vol. 112, No. 2-3. (20 December 2004), pp. 253-256. by A. Pineda, E. Zhang, E. Guinto, S. Savvides, A. Tulinsky, E. Dicera posted to structure thrombin by sobolevnrm to the group baker-group on 2009-02-18 12:22:35 as
	Factor Va Alters the Conformation of the Na+-Binding Loop of Factor Xa in the Prothrombinase Complex [My Copy] Biochemistry, Vol. 47, No. 22. (3 June 2008), pp. 5976-5985. by Likui Yang, Chandrashekhara Manithody, Shabir H. Qureshi, Alireza R. Rezaie posted to thrombin by sobolevnrm to the group baker-group on 2008-07-24 12:13:59 as
	Molecular dynamics simulation of ion selectivity process in nanopores [My Copy] Molecular Simulation, Vol. 34, No. 2. (2008), pp. 169-175. by Hongmei Liu, Cynthia J. Jameson, Sohail Murad posted to electrostatics solvation thrombin by sobolevnrm to the group baker-group on 2008-06-17 11:59:39 as
	Unusual 1H NMR chemical shifts support (His) Cepsilon 1---Hmiddle dotmiddle dotmiddle dotO==C H-bond: Proposal for reaction-driven ring flip mechanism in serine protease catalysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 97, No. 19. (12 September 2000), pp. 10371-10376. by Elissa L. Ash, James L. Sudmeier, Regina M. Day, et al.Matthew Vincent, Ekaterina V. Torchilin, Kristin C. Haddad, Elizabeth M. Bradshaw, David G. Sanford, William W. Bachovchin posted to kinetics thrombin by sobolevnrm to the group baker-group on 2008-06-04 12:18:38 as
	Molecular dynamics simulations of the acyl-enzyme and the tetrahedral intermediate in the deacylation step of serine proteases [My Copy] Proteins, Vol. 47, No. 3. (2002), pp. 357-369. by M. Topf, P. Várnai, C. J. Schofield, W. G. Richards posted to kinetics molecular_simulation thrombin by sobolevnrm to the group baker-group on 2008-06-04 11:58:07 as
	Ab Initio QM/MM Dynamics Simulation of the Tetrahedral Intermediate of Serine Proteases: Insights into the Active Site Hydrogen-Bonding Network [My Copy] J. Am. Chem. Soc., Vol. 124, No. 49. (11 December 2002), pp. 14780-14788. by M. Topf, P. Varnai, W. G. Richards posted to quantum_mechanics thrombin by sobolevnrm to the group baker-group on 2008-05-27 17:34:05 as
	Analysis of Catalytic Mechanism of Serine Proteases. Viability of the Ring-Flip Hypothesis [My Copy] J. Phys. Chem. B (8 May 2008) by Steve Scheiner posted to thrombin by sobolevnrm to the group baker-group on 2008-05-27 17:32:25 as
	Engineering Protein Allostery: 1.05 Å Resolution Structure and Enzymatic Properties of a Na+-activated Trypsin [My Copy] Journal of Molecular Biology, Vol. 378, No. 3. (2 May 2008), pp. 666-672. by Michael J. Page, Christopher J. Carrell, Enrico Di Cera posted to allostery protein_engineering protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2008-05-03 12:32:51 as
	Thrombin [My Copy] Molecular Aspects of Medicine, Vol. In Press, Corrected Proof by Enrico Di Cera posted to review thrombin by sobolevnrm to the group baker-group on 2008-04-29 11:26:25 as along with 1 person guhjy
	Dynamics of single-file water chains inside nanoscale channels: physics, biological significance and applications [My Copy] Journal of Physics D: Applied Physics, Vol. 41, No. 10. (2008), 103002. by Haiping Fang, Rongzheng Wan, Xiaojing Gong, Hangjun Lu, Songyan Li posted to nanotech solvation thrombin by sobolevnrm to the group baker-group on 2008-04-23 11:01:51 as
	Triggers, targets and treatments for thrombosis [My Copy] Nature, Vol. 451, No. 7181. (21 February 2008), pp. 914-918. by Nigel Mackman posted to thrombin by sobolevnrm to the group baker-group on 2008-03-14 11:14:39 as along with 1 person DavidG67
	K+/Na+ Selectivity in K Channels and Valinomycin: Over-coordination Versus Cavity-size constraints [My Copy] Journal of Molecular Biology, Vol. 376, No. 1. (8 February 2008), pp. 13-22. by Sameer Varma, Dubravko Sabo, Susan B. Rempe posted to biomembranes ion_channels solvation thrombin by sobolevnrm to the group baker-group on 2008-03-10 11:41:18 as
	Structural identification of the pathway of long-range communication in an allosteric enzyme [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 1832-1837. by Prafull S. Gandhi, Zhiwei Chen, F. Scott Mathews, Enrico Di Cera posted to allostery structure thrombin by sobolevnrm to the group baker-group on 2008-03-04 12:37:52 as along with 3 people boris_aguilar lna cactus
	Mechanism of Na+ binding to thrombin resolved by ultra-rapid kinetics [My Copy] Biophysical Chemistry, Vol. In Press, Accepted Manuscript by Stefano Gianni, Ylva Ivarsson, Alaji Bah, Leslie A. Bush-Pelc, Enrico Di Cera posted to thrombin by sobolevnrm to the group baker-group on 2007-10-04 13:12:06 as
	Important role of the Cys-191: Cys-220 disulfide bond in thrombin function and allostery [My Copy] Journal of Biological Chemistry (in press) by Bush L. A. Pelc, F. Marino, Z. Chen, A. O. Pineda, F. S. Mathews, E. Di Cera posted to thrombin by sobolevnrm to the group baker-group on 2007-07-23 13:34:53 as
	Tuning Ion Coordination Architectures to Enable Selective Partitioning [My Copy] Biophysical Journal, Vol. 93, No. 4. (2007), pp. 1093-9. by S. Varma, S. B. Rempe posted to thrombin biomembranes by sobolevnrm to the group baker-group on 2007-07-23 13:34:53 as
	Crystal structures of murine thrombin in complex with the extracellular fragments of murine protease-activated receptors PAR3 and PAR4 [My Copy] Proceedings of the National Academy of Sciences of the United States of America (in press) by A. Bah, Z. Chen, Push L. A. Pelc, F. S. Mathews, E. Di Cera posted to thrombin structure by sobolevnrm to the group baker-group on 2007-07-07 23:53:48 as

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allostery	26
protein-ligand_interactions	22
protein-protein	19
hirudin	16
review	14
structure	11
solvation	8
electrostatics	5
pka	4
quantum_mechanics	4
crystal-structure	3
nanotech	3
pb	3
astex	2
biomembranes	2
cancer	2
cdk2	2
coagulation	2
fbdd	2
ion_channels	2
kinetics	2
molecular_simulation	2
p38	2
protein_engineering	2
ptp1b	2
ribonuclease	2
thrombomodulin	2
tissuefactor	2
x-ray	2
abdominal_aorta	1
acetylcholinesterase	1
aortic_aneurysm	1
aptamer	1
assay	1
barnase	1
barstar	1
bioinformatics	1
bmp	1
cleavage	1
controlled_release	1
cytometry	1
d_dimer	1
djas	1
efg-like-domain	1
endothelium	1
fasciculin	1
fbl	1
fgf	1
flow	1
fret	1
generation	1
homing	1
huvec	1
inflammation	1
lens	1
malaria	1
myocardial_infarction	1
newt	1
nf-kb	1
nonpolar	1
par1	1
pax-6	1
platelets	1
pro	1
proposal	1
protein-c	1
prothrombin	1
pseudoaneurysm	1
pt	1
receptor	1
regeneration	1
sepsis	1
signaling	1
single_molecule	1
site	1
six-3	1
statistical_mechanics	1
stem_cells	1
tga	1
trap	1
vwf	1

Group: baker-group - with tag thrombin [132 articles] Export

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