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Group: Computational-Genomics - library [86 articles]

Recent papers posted by members of the Computational-Genomics group
  • Discerning the Ancestry of European Americans in Genetic Association Studies
    PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e236.
    by Alkes L Price, Johannah Butler, Nick Patterson, Cristian Capelli, Vincenzo L Pascali, Francesca Scarnicci, Andres Ruiz-Linares, Leif Groop, Angelica A Saetta, Penelope Korkolopoulou, Uri Seligsohn, Alicja Waliszewska, Christine Schirmer, Kristin Ardlie, Alexis Ramos, James Nemesh, Lori Arbeitman, David B Goldstein, David Reich, Joel N Hirschhorn
  • Analysis and Application of European Genetic Substructure Using 300 K SNP Information
    PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e4.
    by Chao Tian, Robert M Plenge, Michael Ransom, Annette Lee, Pablo Villoslada, Carlo Selmi, Lars Klareskog, Ann E Pulver, Lihong Qi, Peter K Gregersen, Michael F Seldin
    posted to caucasians genomics population substructure by xingxu to the group Computational-Genomics on 2008-02-21 23:03:03 as **
  • Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e310.
    by David J Begun, Alisha K Holloway, Kristian Stevens, Ladeana W Hillier, Yu-Ping Poh, Matthew W Hahn, Phillip M Nista, Corbin D Jones, Andrew D Kern, Colin N Dewey, Lior Pachter, Eugene Myers, Charles H Langley
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
  • Hierarchical Organization of Modularity in Metabolic Networks
    Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555.
    by E Ravasz, AL Somera, DA Mongru, ZN Oltvai, AL Barabasi
  • Estimating the Efficiency of Fish Cross-Species cDNA Microarray Hybridization
    Marine Biotechnology
    by Raphael Cohen, Vered Chalifa-Caspi, Timothy Williams, Meirav Auslander, Stephen George, James Chipman, Moshe Tom
  • Three methods for optimization of cross-laboratory and cross-platform microarray expression data
  • Genetics of global gene expression
    Nature Reviews Genetics, Vol. 7, No. 11., pp. 862-872.
    by Matthew V Rockman, Leonid Kruglyak
  • The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.
    Science, Vol. 313, No. 5795. (29 September 2006), pp. 1929-1935.
    by J Lamb, ED Crawford, D Peck, JW Modell, IC Blat, MJ Wrobel, J Lerner, JP Brunet, A Subramanian, KN Ross, M Reich, H Hieronymus, G Wei, SA Armstrong, SJ Haggarty, PA Clemons, R Wei, SA Carr, ES Lander, TR Golub
  • An STS-Based Radiation Hybrid Map of the Human Genome
    Genome Res., Vol. 7, No. 5. (1 May 1997), pp. 422-433.
    by Elizabeth A Stewart, Kathleen B Mckusick, Amita Aggarwal, Ewa Bajorek, Shannon Brady, Angela Chu, Nicole Fang, David Hadley, Mark Harris, Sami Hussain, Richard Lee, Annu Maratukulam, Kyle O'Connor, Shanti Perkins, Mark Piercy, Fawn Qin, Tim Reif, Carla Sanders, Xiaohong She, Wei-Lin Sun, Poroshat Tabar, Susan Voyticky, Sid Cowles, Jian-Bing Fan, Chris Mader, John Quackenbush, Richard M Myers, David R Cox
    posted to rh by neveaire to the group Computational-Genomics on 2007-07-28 01:11:29 as read along with 3 groups Biostatistics Bioinformatics Neuroscience
  • Genome sequence, comparative analysis and haplotype structure of the domestic dog
    Nature, Vol. 438, No. 7069., pp. 803-819.
    by Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, Michael Kamal, Michele Clamp, Jean L Chang, Edward J Kulbokas, Michael C Zody, Evan Mauceli, Xiaohui Xie, Matthew Breen, Robert K Wayne, Elaine A Ostrander, Chris P Ponting, Francis Galibert, Douglas R Smith, Pieter J Dejong, Ewen Kirkness, Pablo Alvarez, Tara Biagi, William Brockman, Jonathan Butler, Chee-Wye Chin, April Cook, James Cuff, Mark J Daly, David Decaprio, Sante Gnerre, Manfred Grabherr, Manolis Kellis, Michael Kleber, Carolyne Bardeleben, Leo Goodstadt, Andreas Heger, Christophe Hitte, Lisa Kim, Klaus-Peter Koepfli, Heidi G Parker, John P Pollinger, Stephen MJ Searle, Nathan B Sutter, Rachael Thomas, Caleb Webber, Eric S Lander
  • Why Are There Still Over 1000 Uncharacterized Yeast Genes?
    Genetics, Vol. 176, No. 1. (1 May 2007), pp. 7-14.
    by Lourdes Pena-Castillo, Timothy R Hughes
  • Haplotype Block Structure and Its Applications to Association Studies: Power and Study Designs
  • The success (or not) of HUGO nomenclature
  • Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection.
    PLoS Comput Biol, Vol. 1, No. 6. (11 November 2005)
    by Rajeev K K Azad, Jeffrey G G Lawrence
  • Mitochondrial DNA and human evolution.
    Nature, Vol. 325, No. 6099. (7 1987), pp. 31-36.
    by RL Cann, M Stoneking, AC Wilson
  • A tutorial on hidden Markov models and selected applications in speech recognition
    Proceedings of the IEEE, Vol. 77, No. 2. (1989), pp. 257-286.
    by LR Rabiner
  • Inferring genetic networks and identifying compound mode of action via expression profiling.
    Science, Vol. 301, No. 5629. (4 July 2003), pp. 102-105.
  • L2L: a simple tool for discovering the hidden significance in microarray expression data
    Genome Biology, Vol. 6, No. 9. (2005)
    by John Newman, Alan Weiner
  • L2L: a simple tool for discovering the hidden significance in microarray expression data
    Genome Biology
    by John
  • PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits
  • A genomic code for nucleosome positioning
    Nature, Vol. 442, No. 7104. (19 July 2006), pp. 772-778.
    by Eran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, Annchristine Thåström, Yair Field, Irene K Moore, Ji-Ping Z Wang, Jonathan Widom
  • Knowledge-based analysis of microarray gene expression data by using support vector machines
    PNAS, Vol. 97, No. 1. (4 January 2000), pp. 262-267.
    by Michael P Brown, William N Grundy, David Lin, Nello Cristianini, Charles W Sugnet, Terrence S Furey, Manuel Ares, David Haussler
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
  • miRNA supplement
    Nature Genetics
  • Genomic signatures to guide the use of chemotherapeutics - Nature Medicine
    Nature Medicine
  • Biological function of unannotated transcription during the early development of Drosophila melanogaster
    Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158.
    by Robert J Manak, Sujit Dike, Victor Sementchenko, Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R Gingeras
  • Tiling DNA microarrays for fly genome cartography
    Nature Genetics, Vol. 38, No. 10., pp. 1101-1102.
    by Brian Oliver
  • An autonomous molecular computer for logical control of gene expression.
    Nature, Vol. 429, No. 6990. (27 May 2004), pp. 423-429.
    by Y Benenson, B Gil, U Ben-Dor, R Adar, E Shapiro
  • Microarray data normalization and transformation - Nature Genetics
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
  • Biological imaging by soft x-ray diffraction microscopy
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15343-15346.
    by David Shapiro, Pierre Thibault, Tobias Beetz, Veit Elser, Malcolm Howells, Chris Jacobsen, Janos Kirz, Enju Lima, Huijie Miao, Aaron M Neiman, David Sayre
  • Human imprinted chromosomal regions are historical hot-spots of recombination.
    PLoS Genet, Vol. 2, No. 7. (July 2006)
  • A radiation hybrid map of 506 STS markers spanning human chromosome 11
    Nat Genet, Vol. 8, No. 1. (1994), pp. 70-76.
  • Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways
    Nature Genetics
    by Ben Lehner, Catriona Crombie, Julia Tischler, Angelo Fortunato, Andrew G Fraser1
  • Statistical Analysis of Crossover Interference Using the Chi-Square Model
    Genetics, Vol. 139, No. 2., 1045.
    by Zhao
  • Genetical genomics: combining genetics with gene expression analysis
    Human Molecular Genetics, Vol. 14 suppl2 (July 2005), pp. R163-R169.
    by Jun Li, Margit Burmeister
  • An evaluation of the draft human genome sequence
    Nat Genet, Vol. 29, No. 1. (2001), pp. 88-91.
    by Nicholas Katsanis, Kim C Worley, James R Lupski
  • Metagenomic Analysis of the Human Distal Gut Microbiome
    Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359.
    by Steven R Gill, Mihai Pop, Robert T Deboy, Paul B Eckburg, Peter J Turnbaugh, Buck S Samuel, Jeffrey I Gordon, David A Relman, Claire M Fraser-Liggett, Karen E Nelson
  • RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse
    Nature, Vol. 441, No. 7092., pp. 469-474.
    by Minoo Rassoulzadegan, Valã©rie Grandjean, Pierre Gounon, Stã©phane Vincent, Isabelle Gillot, Franã§ois Cuzin
  • Detection of parallel functional modules by comparative analysis of genome sequences
    Nature Biotechnology, Vol. 23, No. 2. (04 February 2005), pp. 253-260.
    by Huiying Li, Matteo Pellegrini, David Eisenberg
  • Computing with Membranes
    Journal of Computer and System Sciences, Vol. 61, No. 1. (August 2000), pp. 108-143.
    by Gheorghe Paun
  • Towards computing with proteins
    Proteins, Vol. 1, No. 63. (2006), 53.
  • Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
    Nature, Vol. aop, No. current. (30 January 2005)
    by Lee P Lim, Nelson C Lau, Philip Garrett-Engele, Andrew Grimson, Janell M Schelter, John Castle, David P Bartel, Peter S Linsley, Jason M Johnson
  • The Functional Genomics of Noncoding RNA
    Science, Vol. 309, No. 5740. (02 September 2005), pp. 1527-1528.
    by John S Mattick
  • Collegial decision making based on social amplification leads to optimal group formation
    PNAS, Vol. 103, No. 15. (11 April 2006), pp. 5835-5840.
    by Jean-Marc Ame, Jose Halloy, Colette Rivault, Claire Detrain, Jean L Deneubourg
  • The reversibility of mitotic exit in vertebrate cells
    Nature, Vol. 440, No. 7086., pp. 954-958.
    by Tamara A Potapova, John R Daum, Bradley D Pittman, Joanna R Hudson, Tara N Jones, David L Satinover, Todd P Stukenberg, Gary J Gorbsky
  • On Self-Regulated Swarms, Societal Memory, Speed and Dynamics
    by Vitorino Ramos, Carlos Fernandes, Agostinho C Rosa
  • Societal Implicit Memory and his Speed on Tracking Extrema over Dynamic Environments using Self-Regulatory Swarms
    by Vitorino Ramos, Carlos Fernandes, Agostinho C Rosa
  • Self-Regulated Artificial Ant Colonies on Digital Image Habitats
    by Carlos Fernandes, Vitorino Ramos, Agostinho C Rosa
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