Group: BergmanLab - library 497 articles Export

	Genome evolution and adaptation in a long-term experiment with Escherichia coli. [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong Su S. Yu, Sung Ho H. Yoon, et al.Haeyoung Jeong, Tae Kwang K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted to srs-resequencing evolutionary-rate ecoli by michaelbarton to the group BergmanLab on 2009-10-19 16:52:32 as along with 26 people and 3 groups kintoki zwang jasontsai aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm jjray djkt treangen lp2 codonusage operon diamantis druvus DrRichardBadge richardfranzese Pedro Martinez EvoDevo lab Barcelona iSEEM Journal picks
	How To Choose a Good Scientific Problem [My Copy] Molecular Cell, Vol. 35, No. 6. (24 September 2009), pp. 726-728. by Uri Alon posted to sociology_of_science research by michaelbarton to the group BergmanLab on 2009-10-13 13:54:29 as along with 112 people and 4 groups claudiushauptmann cermak bmoores karthikraman applebyb mordiano Gorzomagnificent Horduna ajaymalik mmwoodman dbikard toszko mthomure timflutre cyounkin marsl0am jmzhuo dmorti renatomilani ibre kevinemamy Sergey_gerbek huberse ddbb12 seneca mattbiehl mmborges GeeSharpMinor jjjpppfff zhangfh andreacapocci melo_mcr aaltenburger iannis jichok josephjose TorstenWaldminghaus kshameer rudalert kvalyi duel_jetty allaves rabit fercosber hax123 iskanbasal livingthingdan poojamaj gonzalez amynmoore ramalldf pvdg sfalsharif dill2009 singhsh rogermug aha jarekadam Jansen04 cgravlee lkakinami anuragsethi flips robfree kaliczp yyfwuhan luciensamary elsantosneto mgaldino daveGerrard sandfire tnhh lesandrop munzmarci pdpcosta mxro wangngu myriasofo OliverHarriman AnthonySoprano robertlischke R_C_Cordeiro daforerog operon nandipati wenhaosparty jeffcrow leocmcheung fgibson snakehsu cisevol dna dullhunk danilov m_lew abellogin cxshang grahamc SantoshKalwar Xusheng leonardo roys benoitvalley zchen75 darshan druvus Asclepius Zephyrus songpku aalibes flieder pedromts UWA Science Communication milab@yzu Information Integration Architecture Roswell Cancer Crosstalk
	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to range_interactions genome_evolution genome-architecture fractal by polivares to the group BergmanLab on 2009-10-12 13:22:13 as along with 31 people and 2 groups pmcarlton alhufton psique qayub chvlyl TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge roys rdiaz daveGerrard colinveal frohike nrk891 zwang timflutre afenley kshameer mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab Journal picks
	Heterotachy, an important process of protein evolution. [My Copy] Molecular biology and evolution, Vol. 19, No. 1. (January 2002), pp. 1-7. by P. Lopez, D. Casane, H. Philippe posted to amino-acid-substitution evolutionary-rate by michaelbarton to the group BergmanLab on 2009-07-15 13:26:35 as along with 1 person ramiro2k
	Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream [My Copy] Nat Biotech, Vol. 27, No. 7. (July 2009), pp. 627-632. by Nikos C. Kyrpides posted to genomics by michaelbarton to the group BergmanLab on 2009-07-10 09:24:57 as along with 3 people seanyuan sharpton neils
	Replication timing and epigenetic reprogramming of gene expression: a two-way relationship? [My Copy] Nat Rev Genet, Vol. 10, No. 4. (April 2009), pp. 269-276. by Anita Gondor, Rolf Ohlsson posted to tor by polivares to the group BergmanLab on 2009-06-16 16:46:08 as along with 3 people inesdesantiago misonneh fenghezi
	Replication timing and metazoan evolution [My Copy] Nat Genet, Vol. 32, No. 3. (November 2002), pp. 336-337. by David M. Gilbert posted to add_to_report tor by polivares to the group BergmanLab on 2009-06-16 16:45:16 as along with 1 person inesdesantiago
	Replication-timing-correlated spatial chromatin arrangements in cancer and in primate interphase nuclei [My Copy] J Cell Sci, Vol. 121, No. 11. (1 June 2008), pp. 1876-1886. by Florian Grasser, Michaela Neusser, Heike Fiegler, et al.Tobias Thormeyer, Marion Cremer, Nigel P. Carter, Thomas Cremer, Stefan Muller posted to encode nuclear_architecture nuclear_sub-compartments rep_origins replication tor by polivares to the group BergmanLab on 2009-04-24 16:53:51 as along with 1 person and 1 group inesdesantiago JLab
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to add chip-seq by polivares to the group BergmanLab on 2009-04-09 16:08:52 as along with 17 people and 1 group n00c darian idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz cthachuk zhouyu aprasad JLab
	Unsupervised segmentation of continuous genomic data. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 11. (1 June 2007), pp. 1424-1426. by Nathan Day, Andrew Hemmaplardh, Robert E. Thurman, John A. Stamatoyannopoulos, William S. Noble posted to bioinformatics hmm by polivares to the group BergmanLab on 2009-04-09 15:29:44 as along with 4 people and 2 groups rdiaz Eroslavochka waszak ealloza JLab BioinfoCIPF
	Oxford Journals \| Life Sciences \| Bioinformatics \| Next Generation Sequencing [My Copy] posted to bioinformatics sequencing by polivares to the group BergmanLab on 2009-02-20 13:07:08 as along with 4 people n00c humburg renatomilani idoerg
	Do Amino Acid Biosynthetic Costs Constrain Protein Evolution in Saccharomyces cerevisiae ? [My Copy] Journal of Molecular Evolution by Douglas Raiford, Esley Heizer, Robert Miller, Hiroshi Akashi, Michael Raymer, Dan Krane posted to 2008-2-mdb amino-acid-usage evolutionary-rate yeast by michaelbarton to the group BergmanLab on 2009-01-16 16:49:35 as
	Protein material costs: single atoms can make an evolutionary difference [My Copy] Trends in Genetics, Vol. 25, No. 1. (January 2009), pp. 5-8. by J. Bragg, A. Wagner posted to amino-acid-substitution amino-acid-usage cost-benefit-analysis cost-minimisation evolutionary-rate fitness gene-expression insertion-deletion nutrient-limitation proteins by michaelbarton to the group BergmanLab on 2009-01-14 14:26:12 as
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to flux-balance-analysis yeast by michaelbarton to the group BergmanLab on 2008-10-10 14:19:56 as along with 22 people and 1 group m_j pmendes windman83 jfr raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk ptrobajo neils dullhunk pengchy tmmurali MetabolicModeling
	The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli [My Copy] Nature Biotechnology, Vol. 26, No. 6. (06 June 2008), pp. 659-667. by Adam M. Feist, Bernhard posted to ecoli genome-scale-models by michaelbarton to the group BergmanLab on 2008-06-14 10:35:25 as along with 6 people and 1 group eline_koers schwartzjmc lflorez fishtank ptrobajo AlexanderPico TNT
	Systems biology of SNPs [My Copy] Mol Syst Biol, Vol. 2 (4 July 2006), pp. E1-E4. by Neema Jamshidi, Bernhard O. Palsson posted to 2008-3-mdb evolutionary-rate snp by michaelbarton to the group BergmanLab on 2008-04-22 18:13:07 as along with 7 people and 4 groups Sonix dchughes raiyar massivemayhem cat_worth dbgrant jo_davies structural_bioinformatics G4ID steinmetzlab Genetics-of-Gambling
	Systems genetics of complex traits in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 299-307. by Julien F. Ayroles, Mary A. Carbone, Eric A. Stone, et al.Katherine W. Jordan, Richard F. Lyman, Michael M. Magwire, Stephanie M. Rollmann, Laura H. Duncan, Faye Lawrence, Robert R. H. Anholt, Trudy F. C. Mackay posted to systems_biology phenotype expression_level drosophila complex_traits by daveGerrard to the group BergmanLab on 2009-11-05 11:10:10 as along with 15 people and 1 group ongenetics timflutre FuncGen thokall bernadettgaal dpollard semrich roys rdiaz fenghezi emptyhb bertrandservin daforerog provero djkt RockmanLab
	Automated design of synthetic ribosome binding sites to control protein expression. [My Copy] Nature biotechnology, Vol. 27, No. 10. (04 October 2009), pp. 946-950. by Howard M. Salis, Ethan A. Mirsky, Christopher A. Voigt posted to gene-expression ecoli by michaelbarton to the group BergmanLab on 2009-10-05 16:05:07 as along with 3 people johntheap mhamidi dbikard
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted to network interactions genomics drosophila by daveGerrard to the group BergmanLab on 2009-09-16 14:13:43 as along with 8 people meanerelk abc623 Borelli carlk bdessailly sotacam kiekyon druvus
	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to transcription_factor genomic evo_devo by daveGerrard to the group BergmanLab on 2009-08-26 10:16:57 as along with 11 people and 1 group venancio aalibes fenghezi idonaldson megraw scjparker maximilianh djkt isimpson Stew druvus Bioinformatics - CRUK
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to srs genome-sequencing by michaelbarton to the group BergmanLab on 2009-08-15 18:57:05 as along with 16 people and 4 groups n00c operon azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje stajich semrich Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology
	Constraint and turnover in sex-biased gene expression in the genus Drosophila [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 233-237. by Yu Zhang, David Sturgill, Michael Parisi, Sudhir Kumar, Brian Oliver posted to drosophila expression_evolution by daveGerrard to the group BergmanLab on 2009-07-07 11:19:19 as along with 3 people and 2 groups CharlesM indigoviolet dpollard EisenLab cis-regulatory-evolution
	Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution [My Copy] Vol. 137, No. 2. (17 April 2009), pp. 356-368. by Irina Solovei, Moritz Kreysing, Christian Lanctôt, et al.Süleyman Kösem, Leo Peichl, Thomas Cremer, Jochen Guck, Boris Joffe posted to chromosome_territory nuclear_archtecture by daveGerrard to the group BergmanLab on 2009-06-24 14:51:51 as along with 2 people biomcgary fenghezi
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted to hts solexa by polivares to the group BergmanLab on 2009-06-16 16:42:59 as along with 14 people jfr jandot ewilban1 inesdesantiago djkt behindtherabbit guhjy humburg Thaverkamp svenrahmann jmeppley idonaldson rdiaz paszkows
	A clustering approach for identification of enriched domains from histone modification ChIP-Seq data [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1952-1958. by Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, Weiqun Peng posted to chip-seq chromatin by polivares to the group BergmanLab on 2009-06-11 11:17:11 as along with 11 people and 1 group hagechouchin443 ashraya stubrown cassj guhjy humburg ewilban1 gdb inesdesantiago fenghezi ghattem SIMR bioinformatics
	Sex-Specific Splicing in Drosophila: Widespread Occurrence, Tissue Specificity and Evolutionary Conservation [My Copy] Genetics, Vol. 181, No. 2. (1 February 2009), pp. 421-434. by Marina Telonis-Scott, Artyom Kopp, Marta L. Wayne, Sergey V. Nuzhdin, Lauren M. McIntyre posted to alternative_splicing regulatory_sequence sex_specific_expression by daveGerrard to the group BergmanLab on 2009-04-22 11:16:30 as along with 1 person djkt
	Transcriptional Control in the Segmentation Gene Network of Drosophila [My Copy] PLoS Biol, Vol. 2, No. 9. (31 August 2004), e271. by Mark D. Schroeder, Michael Pearce, John Fak, et al.HongQing Fan, Ulrich Unnerstall, Eldon Emberly, Nikolaus Rajewsky, Eric D. Siggia, Ulrike Gaul posted to in_silico cis-regulatory by daveGerrard to the group BergmanLab on 2009-03-30 17:13:33 as along with 8 people and 4 groups indigoviolet dpollard adepace wrowell emptyhb dlmace pradiptaray balicea TranscriptionalRegulationWithThermodynamicModels EisenLab Cline_lab UH - Computational Biology
	Shadow Enhancers as a Source of Evolutionary Novelty [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), 1314. by Joung-Woo Hong, David A. Hendrix, Michael S. Levine posted to flies shadow_enhancer by cisevol to the group BergmanLab on 2009-03-30 16:16:57 as along with 16 people and 3 groups mjoach daveGerrard jfr rouault emptyhb dlobo sebastien_vigneau Stew bpcusack Ema Zephyrus djkt natstreet isimpson maximilianh caseybrown TranscriptionalRegulationWithThermodynamicModels GEB Roswell Cancer Crosstalk
	Computational analysis of core promoters in the Drosophila genome [My Copy] Genome Biology, Vol. 3, No. 12. (2002), pp. research0087.1-0087.12. by Uwe Ohler, Guo C. Liao, Heinrich Niemann, Gerald Rubin posted to bioinformatics computational_predicition core_promoter drosophila in_silico by daveGerrard to the group BergmanLab on 2009-03-20 11:24:19 as along with 1 person jmartin49
	A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny. [My Copy] BMC Evolutionary Biology, Vol. 8 (16 December 2008), 331. by Huai-Chun, Andrew J. Roger posted to 2008-2-mdb amino-acid-usage evolutionary-rate by michaelbarton to the group BergmanLab on 2009-01-16 14:46:53 as along with 2 people hdopazo tny
	Promise and Pitfalls of Extending Google's PageRank Algorithm to Citation Networks [My Copy] J. Neurosci., Vol. 28, No. 44. (29 October 2008), pp. 11103-11105. by Sergei Maslov, Sidney Redner posted to citation-analysis page-rank by michaelbarton to the group BergmanLab on 2008-10-31 16:29:01 as along with 7 people CameronNeylon dullhunk daforerog Gaetan paulm fgibson psique
	Impact of Transcriptional Properties on Essentiality and Evolutionary Rate [My Copy] Genetics, Vol. 175, No. 1. (1 January 2007), pp. 199-206. by Jung K. Choi, Sang C. Kim, Jungmin Seo, Sangsoo Kim, Jong Bhak posted to variability expression_evolution constraint by daveGerrard to the group BergmanLab on 2009-11-05 11:42:05 as along with 2 people operon bjorns
	Motif-Blind, Genome-Wide Discovery of cis-Regulatory Modules in Drosophila and Mouse [My Copy] Vol. 17, No. 4. (20 October 2009), pp. 568-579. by Miriam R. Kantorovitz, Majid Kazemian, Sarah Kinston, et al.Diego Miranda-Saavedra, Qiyun Zhu, Gene E. Robinson, Berthold Göttgens, Marc S. Halfon, Saurabh Sinha posted to motif_discovery mammal in_silico human expression drosophila crm cis-regulatory_element by daveGerrard to the group BergmanLab on 2009-10-20 10:04:14 as along with 1 person isimpson
	Understanding relationship between sequence and functional evolution in yeast proteins [My Copy] Genetica, Vol. 131, No. 2. (1 October 2007), pp. 151-156. by Seong-Ho Kim, Soojin Yi posted to analysis statistics by daveGerrard to the group BergmanLab on 2009-07-08 15:05:36 as along with 1 person bpcusack
	A Single Determinant Dominates the Rate of Yeast Protein Evolution [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 327-337. by D. Allan Drummond, Alpan Raval, Claus O. Wilke posted to analysis genomic_parameters by daveGerrard to the group BergmanLab on 2009-07-07 14:24:19 as along with 2 people robfsouza cjeans
	APE: Analyses of Phylogenetics and Evolution in R language [My Copy] Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 289-290. by Emmanuel Paradis, Julien Claude, Korbinian Strimmer posted to r-project by daveGerrard to the group BergmanLab on 2009-07-07 12:47:06 as along with 2 people jyuh adacier
	Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification [My Copy] Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 650-659. by Itai Yanai, Hila Benjamin, Michael Shmoish, et al.Vered Chalifa-Caspi, Maxim Shklar, Ron Ophir, Arren Bar-Even, Shirley Horn-Saban, Marilyn Safran, Eytan Domany, Doron Lancet, Orit Shmueli posted to expression_level genome human tissue_specific by daveGerrard to the group BergmanLab on 2009-07-07 11:35:44 as along with 2 people polivares pengchy
	Rates of Protein Evolution Are Positively Correlated with Developmental Timing of Expression During Mouse Spermatogenesis [My Copy] Mol Biol Evol, Vol. 22, No. 4. (1 April 2005), pp. 1044-1052. by Jeffrey M. Good, Michael W. Nachman posted to development expression protein_evolution by daveGerrard to the group BergmanLab on 2009-07-07 11:32:54 as
	Protein Evolution in the Context of Drosophila Development [My Copy] Journal of Molecular Evolution, Vol. 60, No. 6. (1 June 2005), pp. 774-785. by Jerel C. Davis, Onn Brandman, Dmitri A. Petrov posted to development drosophila evo_devo expression_evolution protein_evolution by daveGerrard to the group BergmanLab on 2009-07-07 11:30:18 as along with 2 people azazello PetrovLab
	Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and Number of Protein-Protein Interactions [My Copy] Mol Biol Evol, Vol. 22, No. 5. (1 May 2005), pp. 1345-1354. by Bernardo Lemos, Brian R. Bettencourt, Colin D. Meiklejohn, Daniel L. Hartl posted to comparative_genomics drosophila expression_evolution gene_length genomic interactions protein_evolution by daveGerrard to the group BergmanLab on 2009-07-07 11:28:02 as along with 3 people and 1 group penka Garamonfok skumagai Nie
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to add assembly chip-seq solexa by polivares to the group BergmanLab on 2009-06-16 16:41:30 as along with 25 people and 4 groups heliopais giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab SIMR bioinformatics Bioinformatics - CRUK
	Rates of divergence in gene expression profiles of primates, mice, and flies: stabilizing selection and variability among functional categories. [My Copy] Evolution, Vol. 59, No. 1. (2005), pp. 126-137. by B. Lemos, C. D. Meiklejohn, M. Cáceres, Hartl posted to expression_evolution by daveGerrard to the group BergmanLab on 2009-06-04 10:39:55 as
	Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome [My Copy] Genome Biology, Vol. 7, No. 11. (29 November 2006), R112. by Casey Bergman, Hadi Quesneville, Dominique Anxolabehere, Michael Ashburner posted to no-tag by daveGerrard to the group BergmanLab on 2009-05-29 12:48:13 as along with 3 people operon timflutre urgi
	Nested genes: biological implications and use of AFM for analysis. [My Copy] Gene, Vol. 350, No. 1. (25 April 2005), pp. 15-23. by C. W. Gibson, N. H. Thomson, W. R. Abrams, J. Kirkham posted to genomics intron_delay nested_genes by daveGerrard to the group BergmanLab on 2009-05-21 15:15:10 as along with 1 person ferin
	Nested genes and increasing organizational complexity of metazoan genomes. [My Copy] Trends in genetics : TIG (5 September 2008) by Raquel Assis, Alexey S S. Kondrashov, Eugene V V. Koonin, Fyodor A A. Kondrashov posted to genomics intron_delay metazoa nested_genes by daveGerrard to the group BergmanLab on 2009-05-21 14:53:54 as along with 2 people and 1 group JustinCrocker stajich Mycology
	Complete Primate Skeleton from the Middle Eocene of Messel in Germany: Morphology and Paleobiology [My Copy] PLoS ONE, Vol. 4, No. 5. (19 May 2009), e5723. by Jens L. Franzen, Philip D. Gingerich, Jörg Habersetzer, Jørn H. Hurum, Wighart von Koenigswald, Holly B. Smith posted to evolution fossil primate by daveGerrard to the group BergmanLab on 2009-05-20 11:54:16 as along with 1 person thegoose
	Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 34. (22 August 2006), pp. 12763-12768. by Frederic Biemar, David A. Nix, Jessica Piel, et al.Brant Peterson, Matthew Ronshaugen, Victor Sementchenko, Ian Bell, Robert J. Manak, Michael S. Levine posted to chip-chip development dorsal drosophila patterning ventral by daveGerrard to the group BergmanLab on 2009-04-22 10:43:46 as along with 2 people and 1 group Stew emptyhb EisenLab
	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. [My Copy] PLoS biology, Vol. 6, No. 2. (12 February 2008), e27. by X. Y. Li, S. MacArthur, R. Bourgon, et al.D. Nix, D. A. Pollard, V. N. Iyer, A. Hechmer, L. Simirenko, M. Stapleton, C. L. Luengo Hendriks, H. C. Chu, N. Ogawa, W. Inwood, V. Sementchenko, A. Beaton, R. Weiszmann, S. E. Celniker, D. W. Knowles, T. Gingeras, T. P. Speed, M. B. Eisen, M. D. Biggin posted to caudal chip-chip cis-regulatory drosophila giant by daveGerrard to the group BergmanLab on 2009-04-08 15:35:28 as along with 8 people gdb kengg maximilianh caseybrown emptyhb brant isimpson Stew
	Global Analysis of mRNA Localization Reveals a Prominent Role in Organizing Cellular Architecture and Function [My Copy] Cell, Vol. 131, No. 1. (5 October 2007), pp. 174-187. by Eric Lecuyer, Hideki Yoshida, Neela Parthasarathy, et al.Christina Alm, Tomas Babak, Tanja Cerovina, Timothy R. Hughes, Pavel Tomancak, Henry M. Krause posted to cellular_architecture drosophila in_situ by daveGerrard to the group BergmanLab on 2009-04-08 10:39:27 as along with 3 people and 1 group dpollard wrowell oelemento EisenLab
	The genomic response to 20-hydroxyecdysone at the onset of Drosophila metamorphosis. [My Copy] Genome biology, Vol. 6, No. 12. (2005) by R. B. Beckstead, G. Lam, C. S. Thummel posted to drosophila ecdysone_receptor metamorphosis by daveGerrard to the group BergmanLab on 2009-04-06 11:05:34 as along with 1 person cccotton

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transposon	62
drosophila	59
text_mining	57
cis-regulatory	48
mammals	47
expression_evolution	20
genome_bioinformatics	17
comparative_genomics	14
hts	14
promoter	14
review	14
te	14
flies	13
in_silico	13
noncoding	13
sociology_of_science	12
human	11
intron_delay	11
bioinformatics	10
conserved_regulatory_element	10
curated	10
chromatin	9
evolution	9
expression	9
genomics	9
r	9
genome_sequence	8
model	8
yeast	8
database	7
full_text	7
microarray	7
rearrangement	7
add	6
biodiversity_informatics	6
chip-seq	6
evolutionary-rate	6
genome_browser	6
mammal	6
networks	6
overlapping_gene	6
replication	6
alignment	5
fungi	5
gene	5
gene_length	5
semantic_web	5
transcription	5
454	4
alu	4
assembly	4
core_promoter	4
development	4
ecoli	4
expression_level	4
gene_regulation	4
genome	4
genomic	4
interactions	4
introns	4
junk_dna	4
l1	4
p-element	4
rate_of_evolution	4
rna	4
transcription_factor	4
variation	4
vertebrate	4
visualization	4
alternative_splicing	3
amino-acid-usage	3
bacteria	3
chromosome_territory	3
cis-regulatory_element	3
codon_bias	3
complex_traits	3
computational_predicition	3
constraint	3
evo_devo	3
genome_architecture	3
genome_evolution	3
hmm	3
intron	3
modelling_embryogenesis	3
mutation	3
nested_genes	3
network	3
nuclear_archtecture	3
plants	3
protein_evolution	3
quakeatl	3
regulatory_sequence	3
rsat	3
sequence_analysis	3
sex_specific_expression	3
splicing	3
statistics	3
tfbs	3
tissue_specific	3
tool	3
tor	3
tutorial	3
zygotic_transcription	3
2008-2-mdb	2
allele	2
alternative	2
amino-acid-substitution	2
analysis	2
annotation	2
apobec	2
arabidopsis	2
caudal	2
chip-chip	2
chip-on-chip	2
cis_vs_trans	2
co-expression	2
comparison	2
cost	2
crm	2
ctcf	2
deanbergman	2
dn_ds	2
dorsal	2
dtg	2
ecdysone_receptor	2
encode	2
exon	2
figure_legends	2
fugu	2
gene_expression	2
gene-expression	2
gene_name_normalization	2
gene_order	2
genome_annotation	2
hall_of_fame	2
inhibition	2
insertion	2
intron_size	2
light-shotgun	2
manual_corpus	2
mirna	2
motif_discovery	2
neutral_theory	2
nucleosome	2
overlap	2
path_analysis	2
pcr	2
polymorphism	2
primer	2
regulation	2
regulatory	2
reporter_gene_assay	2
selection	2
sequence	2
sequencing	2
singlegenomeamplification	2
solexa	2
tata	2
tissue	2
transcription_factory	2
transcript_length	2
transformation	2
transposable_elements	2
tss	2
2008-3-mdb	1
5-utr	1
accuracy	1
add_to_report	1
affymetrix	1
aggregator	1
ascertainment_bias	1
basecalling	1
bayes	1
bayesian	1
beetles	1
best_practice	1
bibliometrics	1
binding_site	1
biomart	1
bloggging	1
blogging	1
bookmarking	1
breakpoints	1
cad	1
catalase	1
cellular_architecture	1
chado	1
chimera	1
chip	1
cis-elements	1
cis-regulation	1
cis-trans	1
citation-analysis	1
citeulike	1
cns-differences	1
cns-ranking	1
coding	1
codon_usage	1
cohesin	1
collaboration	1
collaboratories	1
community_curation	1
compression	1
conservation	1
conserved	1
cost-benefit-analysis	1
cost-minimisation	1
cpg	1
cre	1
cuda	1
curation	1
cytogenomics	1
da	1
data_mining	1
data-mining	1
defragmentation	1
digital_life	1
direct_repeat	1
dna	1
dna_structure	1
domestication	1
dorsal_ventral	1
dpe	1
dref	1
drosophila_melanogaster	1
drosphila	1
ecr	1
editing	1
eip74ef	1
emsa	1
enhancer	1
enzyme	1
epigenetics	1
erv	1
est	1
evolvability	1
exonisation	1
experimental_evolution	1
families	1
fitness	1
fixation	1
flu	1
flux-balance-analysis	1
fly	1
fossil	1
fractal	1
gaga	1
gene-duplication	1
gene_name_recognition	1
gene_names	1
gene_ontology	1
gene_prediction	1
genes	1
gene_structure	1
genetics	1
genome-architecture	1
genome_organization	1
genome-scale-models	1
genome-sequencing	1
genomic_parameters	1
giant	1
go	1
google	1
gui	1
heterochromatin	1
histone_modifications	1
hourglass_model	1
image	1
imprinting	1
information_retrieval	1
insertion-deletion	1
in_situ	1
inversion	1
journal_club	1
liftover	1
line	1
ltr	1
luciferase	1
machine_learning	1
mapper	1
maq	1
maternal	1
matrix	1
mef2	1
melanogaster	1
metamorphosis	1
metazoa	1
methods	1
mobile_element	1
molecular_evolution	1
motif	1
motif-discovery	1
muscle	1
mutation_accumulation	1
mutational_variance	1
natural_variation	1
new	1
ng1	1
ngs	1
noncoding_regions	1
non-coding_rna	1
nuclear_architecture	1
nuclear_sub-compartments	1
nutrient-limitation	1
ontologies	1
ontology	1
open_dna	1
open-science	1
opinion	1
origin_of_replication	1
page-rank	1
parallel_processing	1
paternal	1
patterning	1
peak	1
pelement	1
performance	1
phenotype	1
point_mutations	1
polymerase	1
poplar	1
populatoin_genomics	1
positiveselection	1
prediction	1
primate	1
principal_components	1
protein-coding	1
proteins	1
pseudogenes	1
pubmedcentral	1
pyrosequencing	1
range_interactions	1
rate_of_mutation	1
read_mapping	1
rep_origins	1
rescue	1
research	1
retroelement	1
rice	1
rna_editing	1
rna-seq	1
roc	1
r-project	1
rules_of_the_game	1
sea_urchin	1
sequence_extraction	1
sex_pheromone	1
shadow_enhancer	1
sites	1
sleep	1
snp	1
snrna	1
social	1
software	1
software_library	1
speciation	1
species_barrier	1
species_name_recognition	1
specific	1
splice	1
srs	1
srs-resequencing	1
standards	1
systems_biology	1
target	1
thermal_cycler	1
tissue_specificity	1
topography	1
transcriptional_repressor	1
transcription_factor_binding_site	1
transcription_factors	1
transposable-element	1
trna	1
u7	1
utr	1
variability	1
venn_diagrams	1
ventral	1
vertebrates	1
visualisation	1
wavelets	1
whole_genome_alignment	1
wolbachia	1
worms	1
x_chromosome	1
xiao	1
xml	1
zinc_finger	1

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