Group: BergmanLab - with tag cis-regulatory [48 articles] Export

Recent papers posted by members of the BergmanLab group with tag cis-regulatory

	Inherent promoter bidirectionality facilitates maintenance of sequence integrity and transcription of parasitic DNA in mammalian genomes [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 498. by Paul Kalitsis, Richard Saffery posted to transposable_elements promoter mammals cis-regulatory by cisevol to the group BergmanLab on 2009-10-30 21:10:56 as along with 1 group cis-regulatory-evolution
	Flexibility of transcription factor target site position in conserved cis-regulatory modules. [My Copy] Developmental biology (17 September 2009) by R. Andrew Cameron, Eric H. Davidson posted to transformation sea_urchin cis-regulatory by cisevol to the group BergmanLab on 2009-09-28 11:38:19 as along with 1 person and 1 group maximilianh cis-regulatory-evolution
	Regulation of Ubx Expression by Epigenetic Enhancer Silencing in Response to Ubx Levels and Genetic Variation [My Copy] PLoS Genet, Vol. 5, No. 9. (4 September 2009), e1000633. by Michael A. Crickmore, Vikram Ranade, Richard S. Mann posted to variation flies cis-regulatory by cisevol to the group BergmanLab on 2009-09-17 11:01:45 as along with 2 people and 1 group emptyhb djkt cis-regulatory-evolution
	BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (28 August 2009), 217. by Rahul Satija, Adam Novak, Istvan Miklos, Rune Lyngso, Jotun Hein posted to noncoding model cis-regulatory by cisevol to the group BergmanLab on 2009-09-17 10:58:47 as along with 3 people and 1 group cmzmasek djkt phoenixzxl cis-regulatory-evolution
	Exaptation of an ancient Alu short interspersed element provides a highly conserved vitamin D-mediated innate immune response in humans and primates. [My Copy] BMC genomics, Vol. 10, No. 1. (16 July 2009), 321. by Adrian F. Gombart, Tsuyako Saito, H. Phillip Koeffler posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2009-07-22 09:32:06 as along with 2 people and 1 group KGelling maximilianh cis-regulatory-evolution
	Computational methods for the detection of cis-regulatory modules [My Copy] Brief Bioinform, Vol. 10, No. 5. (1 September 2009), pp. 509-524. by Peter Van Loo, Peter Marynen posted to cis-regulatory model review by cisevol to the group BergmanLab on 2009-06-16 12:56:59 as along with 5 people reyez idonaldson kshameer nklee druvus
	Association of orthodenticle with natural variation for early embryonic patterning in Drosophila melanogaster. [My Copy] Journal of experimental zoology. Part B. Molecular and developmental evolution (1 June 2009) by Lisa M M. Goering, Priscilla K K. Hunt, Cassandra Heighington, et al.Christopher Busick, Pleuni Pennings, Joachim Hermisson, Sudhir Kumar, Greg Gibson posted to cis-regulatory flies variation by cisevol to the group BergmanLab on 2009-06-03 20:25:53 as along with 1 group cis-regulatory-evolution
	Regulation of the segmentation gene fushi tarazu has been functionally conserved in Drosophila. [My Copy] The EMBO journal, Vol. 9, No. 12. (December 1990), pp. 3957-3966. by D. Maier, A. Preiss, J. R. Powell posted to cis-regulatory flies rescue by cisevol to the group BergmanLab on 2009-05-29 10:12:01 as along with 1 group cis-regulatory-evolution
	The regulated retrotransposon transcriptome of mammalian cells [My Copy] Nature Genetics, Vol. 41, No. 5. (19 April 2009), pp. 563-571. by Geoffrey J. Faulkner, Yasumasa Kimura, Carsten O. Daub, et al.Shivangi Wani, Charles Plessy, Katharine M. Irvine, Kate Schroder, Nicole Cloonan, Anita L. Steptoe, Timo Lassmann, Kazunori Waki, Nadine Hornig, Takahiro Arakawa, Hazuki Takahashi, Jun Kawai, Alistair R. R. Forrest, Harukazu Suzuki, Yoshihide Hayashizaki, David A. Hume, Valerio Orlando, Sean M. Grimmond, Piero Carninci posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2009-05-18 23:14:56 as along with 13 people and 1 group inesdesantiago guhjy gdb galka8_diploma tonamswish renatomilani robfsouza dchughes mtagaya fenghezi jbhiatt natstreet antonkratz cis-regulatory-evolution
	An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome [My Copy] PLoS ONE, Vol. 4, No. 5. (12 May 2009), e5501. by Kyoung-Jae Won, Saurabh Agarwal, Li Shen, Robert Shoemaker, Bing Ren, Wei Wang posted to cis-regulatory model by cisevol to the group BergmanLab on 2009-05-17 09:06:59 as along with 3 people tonamswish guhjy idonaldson
	Affinity Density: a novel genomic approach to the identification of transcription factor regulatory targets. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 13. (1 July 2009), pp. 1617-1624. by Dennis J. Hazelett, Daniel L. Lakeland, Joseph B. Weiss posted to cis-regulatory flies model by cisevol to the group BergmanLab on 2009-05-05 10:14:59 as along with 4 people and 1 group guhjy nklee TRHvidsten nuin cis-regulatory-evolution
	Systematic identification of mammalian regulatory motifs' target genes and functions [My Copy] Nat Meth, Vol. 5, No. 4. (02 April 2008), pp. 347-353. by Jason B. Warner, Anthony A. Philippakis, Savina A. Jaeger, Fangxue S. He, Jolinta Lin, Martha L. Bulyk posted to cis-regulatory in_silico mammal by daveGerrard to the group BergmanLab on 2009-04-15 13:12:57 as along with 6 people and 1 group Stew tmmurali zwang ptrobajo guhjy isimpson Bioinformatics - CRUK
	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. [My Copy] PLoS biology, Vol. 6, No. 2. (12 February 2008), e27. by X. Y. Li, S. MacArthur, R. Bourgon, et al.D. Nix, D. A. Pollard, V. N. Iyer, A. Hechmer, L. Simirenko, M. Stapleton, C. L. Luengo Hendriks, H. C. Chu, N. Ogawa, W. Inwood, V. Sementchenko, A. Beaton, R. Weiszmann, S. E. Celniker, D. W. Knowles, T. Gingeras, T. P. Speed, M. B. Eisen, M. D. Biggin posted to caudal chip-chip cis-regulatory drosophila giant by daveGerrard to the group BergmanLab on 2009-04-08 15:35:28 as along with 8 people gdb kengg maximilianh caseybrown emptyhb brant isimpson Stew
	Transcriptional Control in the Segmentation Gene Network of Drosophila [My Copy] PLoS Biol, Vol. 2, No. 9. (31 August 2004), e271. by Mark D. Schroeder, Michael Pearce, John Fak, et al.HongQing Fan, Ulrich Unnerstall, Eldon Emberly, Nikolaus Rajewsky, Eric D. Siggia, Ulrike Gaul posted to in_silico cis-regulatory by daveGerrard to the group BergmanLab on 2009-03-30 17:13:33 as along with 8 people and 4 groups indigoviolet dpollard adepace wrowell emptyhb dlmace pradiptaray balicea TranscriptionalRegulationWithThermodynamicModels EisenLab Cline_lab UH - Computational Biology
	Detection of cis -element clusters in higher eukaryotic DNA [My Copy] Bioinformatics, Vol. 17, No. 10. (1 October 2001), pp. 878-889. by Martin C. Frith, Ulla Hansen, Zhiping Weng posted to binding_site in_silico cis-regulatory by daveGerrard to the group BergmanLab on 2009-03-30 16:40:30 as along with 2 people and 1 group maximilianh indigoviolet EisenLab
	Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo. [My Copy] BMC Bioinformatics, Vol. 3 (24 October 2002) by N. Rajewsky, M. Vergassola, U. Gaul, E. D. Siggia posted to in_silico prediction cis-regulatory by daveGerrard to the group BergmanLab on 2009-03-30 16:39:00 as along with 8 people and 1 group maximilianh isimpson ansobol indigoviolet adepace koller Stew csdhwang EisenLab
	Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo. [My Copy] Genes Dev, Vol. 21, No. 4. (15 February 2007), pp. 385-390. by J. Zeitlinger, R. P. Zinzen, A. Stark, et al.M. Kellis, H. Zhang, R. A. Young, M. Levine posted to curated cis-regulatory by daveGerrard to the group BergmanLab on 2009-03-26 10:19:59 as along with 8 people and 2 groups emptyhb dpollard kengg johncumbers gsrats ghattem jtomasch Stew EisenLab Plantandetc
	Cross-talking among Drosophila nuclear receptors at the promiscuous response element of the ng-1 and ng-2 intermolt genes [My Copy] Journal of Molecular Biology, Vol. 275, No. 4. (30 January 1998), pp. 561-574. by S. Crispi posted to cis-regulatory curated direct_repeat drosophila ecr ng1 by daveGerrard to the group BergmanLab on 2009-03-25 17:33:56 as
	Transcriptional regulation of the Drosophila caudal homeobox gene by DRE/DREF. [My Copy] Nucleic acids research, Vol. 32, No. 12. (2004), pp. 3734-3742. by Y. J. Choi, T. Y. Choi, M. Yamaguchi, A. Matsukage, Y. S. Kim, M. A. Yoo posted to cad caudal cis-regulatory conserved_regulatory_element curated dref drosophila luciferase by daveGerrard to the group BergmanLab on 2009-03-25 15:47:59 as
	Interspecific comparisons of the structure and regulation of the Drosophila ecdysone-inducible gene E74. [My Copy] Genetics, Vol. 127, No. 3. (March 1991), pp. 535-543. by C. W. Jones, M. W. Dalton, L. H. Townley posted to cis-regulatory conserved_regulatory_element curated drosophila eip74ef by daveGerrard to the group BergmanLab on 2009-03-25 09:41:21 as
	Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 82. by Bartek Wilczynski, Norbert Dojer, Mateusz Patelak, Jerzy Tiuryn posted to cis-regulatory comparative_genomics model by cisevol to the group BergmanLab on 2009-03-11 18:09:20 as along with 9 people and 1 group daveGerrard ilyashl svenrahmann idonaldson maximilianh bmajoros nuin idoerg dquest cis-regulatory-evolution
	Retroviral integration sites (RIS) mark cis-regulatory elements. [My Copy] Critical reviews in oncology/hematology (27 November 2008) by Cherry Ee Lin E. Ng, Yoshiaki Ito, Motomi Osato posted to cis-regulatory transposon by cisevol to the group BergmanLab on 2008-12-09 20:03:28 as along with 1 group cis-regulatory-evolution
	Text-mining assisted regulatory annotation [My Copy] Genome Biology, Vol. 9, No. 2. (2008) by Stein Aerts, Maximilian Haeussler, Steven van Vooren, et al.Obi Griffith, Paco Hulpiau, Steven Jones, Stephen Montgomery, Casey Bergman, The posted to cis-regulatory text_mining by cisevol to the group BergmanLab on 2008-11-25 16:02:01 as along with 13 people and 1 group artaban421 henk-cul daforerog daveGerrard yas dullhunk maximilianh idonaldson mircea jsjoly isimpson bpcusack guhjy dbmi-nlp
	Evolution of the mammalian transcription factor binding repertoire via transposable elements [My Copy] Genome Research, Vol. 18, No. 11. (5 November 2008), pp. 1752-1762. by Guillaume Bourque, Bernard Leong, Vinsensius B. Vega, et al.Xi Chen, Yen L. Lee, Kandhadayar G. Srinivasan, Joon-Lin Chew, Yijun Ruan, Chia-Lin Wei, Huck H. Ng, Edison T. Liu posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-09-30 08:23:52 as along with 3 people and 1 group operon mhiromi maximilianh cis-regulatory-evolution
	A novel mode of enhancer evolution: The Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity [My Copy] Genome Research, Vol. 18, No. 9. (7 September 2008), pp. 1422-1432. by Aileen M. Smith, Maria-Jose Sanchez, George A. Follows, et al.Sarah Kinston, Ian J. Donaldson, Anthony R. Green, Berthold GÃ¶ttgens posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-08-11 19:50:59 as along with 4 people and 1 group operon cisstem emptyhb maximilianh cis-regulatory-evolution
	Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA. [My Copy] BMC genomics, Vol. 9 (17 May 2008), 226. by Nalini Polavarapu, Leonardo Mariño-Ramírez, David Landsman, John F. McDonald, I. King Jordan posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-05-29 22:08:58 as along with 3 people and 1 group daforerog pradiptaray bryankr cis-regulatory-evolution
	Transcription of two human genes from a bidirectional endogenous retrovirus promoter. [My Copy] Gene (7 November 2005) by Catherine A A. Dunn, Mark T T. Romanish, Leanne E E. Gutierrez, Louie N N. van de Lagemaat, Dixie L L. Mager posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-05-16 15:21:47 as along with 1 person and 3 groups dchughes G4ID Genetics-of-Gambling cis-regulatory-evolution
	Retrotransposon Tf1 is targeted to Pol II promoters by transcription activators. [My Copy] Molecular cell, Vol. 30, No. 1. (11 April 2008), pp. 98-107. by Y. E. Leem, T. L. Ripmaster, F. D. Kelly, et al.H. Ebina, M. E. Heincelman, K. Zhang, S. I. Grewal, C. S. Hoffman, H. L. Levin posted to cis-regulatory expression fungi by cisevol to the group BergmanLab on 2008-05-10 09:06:08 as along with 1 group cis-regulatory-evolution
	Possible involvement of SINEs in mammalian-specific brain formation [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4220-4225. by Takeshi Sasaki, Hidenori Nishihara, Mika Hirakawa, et al.Koji Fujimura, Mikiko Tanaka, Nobuhiro Kokubo, Chiharu Kimura-Yoshida, Isao Matsuo, Kenta Sumiyama, Naruya Saitou, Tomomi Shimogori, Norihiro Okada posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-04-26 19:38:10 as along with 2 people and 1 group operon FMoncini cis-regulatory-evolution
	Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Model. [My Copy] J Comput Biol (11 March 2008) by Jing Wu, Jun Xie posted to cis-regulatory model by cisevol to the group BergmanLab on 2008-03-13 19:45:10 as along with 5 people daveGerrard isimpson maximilianh csdhwang pradiptaray
	Links between core promoter and basic gene features influence gene expression [My Copy] BMC Genomics, Vol. 9 (25 February 2008), 92. by Sandra Moshonov, Rofa Elfakess, Michal Golan-Mashiach, Hadar Sinvani, Rivka Dikstein posted to cis-regulatory by cisevol to the group BergmanLab on 2008-02-29 09:36:38 as along with 2 people and 1 group inesdesantiago rpatward cis-regulatory-evolution
	Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo. [My Copy] Proc Natl Acad Sci U S A (25 January 2008) by Angel Carlos C. Roman, Dixan A A. Benitez, Jose M M. Carvajal-Gonzalez, Pedro M M. Fernandez-Salguero posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-02-05 21:18:50 as along with 1 person and 1 group maximilianh cis-regulatory-evolution
	Do Alu repeats shape the primate transcriptome? [My Copy] Genome Biology, Vol. 9, No. 2. (2008) by Araxi Urrutia, Leandro B. Ocana, Laurence Hurst posted to cis-regulatory mammals microarray transposon by cisevol to the group BergmanLab on 2008-02-04 22:40:36 as along with 4 people and 1 group djkt biomcgary bpcusack dchughes cis-regulatory-evolution
	On the relation between promoter divergence and gene expression evolution [My Copy] Molecular Systems Biology, Vol. 4 (15 January 2008) by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai posted to cis-regulatory fungi microarray by cisevol to the group BergmanLab on 2008-01-30 20:35:13 as along with 10 people and 1 group daveGerrard emptyhb balicea kengg zwang biomcgary caseybrown renatomilani mclarenv Jporci cis-regulatory-evolution
	Human cis natural antisense transcripts initiated by transposable elements. [My Copy] Trends Genet (11 January 2008) by Andrew B B. Conley, Wolfgang J J. Miller, I King K. Jordan posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2008-01-20 22:36:40 as along with 6 people and 1 group gpappas balicea dchughes sebastien_vigneau timflutre yoanjacquemin cis-regulatory-evolution
	Genome-wide changes in expression profile of murine endogenous retroviruses (MuERVs) in distant organs after burn injury [My Copy] BMC Genomics, Vol. 8 (28 November 2007), 440. by Young-Kwan Lee, Alex Chew, Lauren Fitzsimon, Rita Thomas, David Greenhalgh, Kiho Cho posted to cis-regulatory transposon by cisevol to the group BergmanLab on 2007-12-03 11:16:30 as
	A transposable element inserted just 5' to a Drosophila glue protein gene alters gene expression and chromatin structure. [My Copy] Cell, Vol. 34, No. 1. (August 1983), pp. 75-84. by W. McGinnis, A. W. Shermoen, S. K. Beckendorf posted to cis-regulatory flies transposon by cisevol to the group BergmanLab on 2007-12-01 16:48:38 as along with 1 person and 1 group aaltenburger cis-regulatory-evolution
	Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution [My Copy] PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e10. by Mark T. Romanish, Wynne M. Lock, Louie N. de Lagemaat, Catherine A. Dunn, Dixie L. Mager posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2007-11-01 10:55:08 as along with 3 people and 3 groups dchughes Fei yoanjacquemin G4ID Genetics-of-Gambling cis-regulatory-evolution
	Ancient Exaptation of a CORE-SINE Retroposon into a Highly Conserved Mammalian Neuronal Enhancer of the Proopiomelanocortin Gene. [My Copy] PLoS Genet, Vol. 3, No. 10. (5 October 2007) by Andrea M M. Santangelo, Flávio S J S. de Souza, Lucía F F. Franchini, Viviana F F. Bumaschny, Malcolm J J. Low, Marcelo Rubinstein posted to cis-regulatory mammals transposon by cisevol to the group BergmanLab on 2007-10-26 22:11:35 as along with 3 people and 1 group timflutre gpappas dchughes cis-regulatory-evolution
	Remarkable site specificity of local transposition into the Hsp70 promoter of Drosophila melanogaster. [My Copy] Genetics, Vol. 173, No. 2. (June 2006), pp. 809-820. by V. Y. Shilova, D. G. Garbuz, E. N. Myasyankina, et al.B. Chen, M. B. Evgen'ev, M. E. Feder, O. G. Zatsepina posted to cis-regulatory flies transposon by cisevol to the group BergmanLab on 2007-10-25 11:56:50 as along with 1 person and 1 group pradiptaray cis-regulatory-evolution
	The regulatory content of intergenic DNA shapes genome architecture. [My Copy] Genome Biol, Vol. 5, No. 4. (2004) by C. E. Nelson, B. M. Hersh, S. B. Carroll posted to cis-regulatory flies noncoding worms by cisevol to the group BergmanLab on 2007-10-24 10:08:04 as along with 8 people and 3 groups thegoose2 daveGerrard JustinCrocker tharris dpollard madhadron elzodw blobbybirdman C. elegans / WormBase EisenLab cis-regulatory-evolution
	ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 5. (1 March 2006), pp. 637-640. by S. B. Montgomery, O. L. Griffith, M. C. Sleumer, et al.C. M. Bergman, M. Bilenky, E. D. Pleasance, Y. Prychyna, X. Zhang, S. J. Jones posted to cis-regulatory database by cisevol to the group BergmanLab on 2007-10-23 19:23:21 as along with 3 people and 2 groups hendrik85 yas fpattyn T_lab cis-regulatory-evolution
	PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation [My Copy] Genome Biology, Vol. 8 (04 October 2007), R207. by Elodie Portales-Casamar, Stefan Kirov, Jonathan Lim, et al.Stuart Lithwick, Magdalena I. Swanson, Amy Ticoll, Jay Snoddy, Wyeth W. Wasserman posted to cis-regulatory database by cisevol to the group BergmanLab on 2007-10-23 19:13:41 as along with 2 people and 2 groups dpollard pradiptaray EisenLab cis-regulatory-evolution
	Housekeeping genes tend to show reduced upstream sequence conservation [My Copy] Genome Biology, Vol. 8 (13 July 2007), R140. by Domenec Farre, Nicolas Bellora, Loris Mularoni, Xavier Messeguer, Mar posted to cis-regulatory mammals noncoding by cisevol to the group BergmanLab on 2007-10-23 19:01:52 as along with 6 people and 2 groups daveGerrard inesdesantiago treangen djkt Garamonfok gjuggler Bioinformatics cis-regulatory-evolution
	Heat-Shock Promoters: Targets for Evolution by <italic>P</italic> Transposable Elements in <italic>Drosophila</italic> [My Copy] PLoS Genet, Vol. 2, No. 10. (6 October 2006), e165. by Jean-Claude Walser, Bing Chen, Martin E. Feder posted to cis-regulatory flies p-element transposon by cisevol to the group BergmanLab on 2007-10-21 18:52:05 as along with 1 person and 2 groups dpollard EisenLab cis-regulatory-evolution
	The information coded in the yeast response elements accounts for most of the topological properties of its transcriptional regulation network. [My Copy] PLoS ONE, Vol. 2, No. 6. (2007) by D. Balcan, A. Kabakçioğlu, M. Mungan, A. Erzan posted to cis-regulatory flies by cisevol to the group BergmanLab on 2007-10-19 15:35:36 as along with 1 person thecolourblue
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to cis-regulatory fungi by cisevol to the group BergmanLab on 2007-10-19 15:33:26 as along with 29 people and 7 groups viren4388 daveGerrard Dulce talponer wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling
	Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication. [My Copy] Nucleic Acids Res, Vol. 34, No. 14. (2006), pp. 3862-3877. by R. Johnson, R. J. Gamblin, L. Ooi, et al.A. W. Bruce, I. J. Donaldson, D. R. Westhead, I. C. Wood, R. M. Jackson, N. J. Buckley posted to cis-regulatory transposon by idonaldson to the group BergmanLab on 2007-10-18 17:08:41 as along with 2 people and 1 group cisevol RaquelSL cis-regulatory-evolution

Note: You may cite this page as: http://www.citeulike.org/group/3266/tag/cis-regulatory

mammals	183
flies	134
transposon	101
model	84
variation	60
fungi	53
bacteria	29
review	29
prediction	18
drosophila	17
noncoding	17
duplication	15
elements	15
microarray	14
evolution	11
comparative_genomics	8
worms	7
database	6
motif	6
vertebrate	6
viral	6
alignment	5
elgar	5
fish	5
methods	5
promoter	5
clustering	4
conserved	4
curated	4
expression	4
footprinting	4
in_silico	4
modules	4
non-coding	4
urchin	4
yeast	4
module	3
phlyogenetic	3
rescue	3
sea_urchin	3
transformation	3
transposable_elements	3
adaptation	2
ancient_dna	2
arabidopsis	2
ath5	2
beetles	2
caudal	2
ciona	2
comparative	2
conserved_regulatory_element	2
cytonuclear	2
evodevo	2
frog	2
gene_conversion	2
genomics	2
haplotype	2
horizontal_transfer	2
hox_genes	2
human	2
logic	2
mosquitoes	2
mouse	2
plants	2
rearrangement	2
regression	2
regulation	2
regulatory	2
repetitive_dna	2
retina	2
rice	2
sequence	2
text_mining	2
transcription	2
transcription_factor	2
transfer	2
zebrafish	2
analysis	1
architecture	1
binding_site	1
cis	1
distance	1
fly	1
genome-wide	1
giant	1
hmm	1
identity	1
mapping	1
mating	1
mirna	1
noalignment	1
p-element	1
phenotype	1
phylogenetic	1
pleiotropy	1
position	1
subfunctionalization	1
success	1
tfbs	1
transcriptional	1

Group: BergmanLab - with tag cis-regulatory [48 articles] Export

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