Group: dbmi-nlp - library 405 articles Export

	Feature Selection for Text Classification [My Copy] In Computational Methods of Feature Selection (2007) by George Forman edited by Huan Liu, Huan Motoda posted to text-classification n-grams feature-selection character-n-grams by henk-cul to the group dbmi-nlp on 2009-11-09 15:30:52 as
	The Role of Information Technology in Medical Research [My Copy] In 2009 Atlanta Conference on Science, Technology and Innovation Policy (2009) by Daniel Castro posted to usa uk overview nhs medical-research health-informatics by henk-cul to the group dbmi-nlp on 2009-10-29 16:42:08 as
	Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D. [My Copy] Bioinformatics (Oxford, England) (22 October 2009), btp602. by Yun Niu, David Otasek, Igor Jurisica posted to protein-interactions features feature-evaluation by henk-cul to the group dbmi-nlp on 2009-10-28 18:25:08 as along with 1 person druvus
	Construction of an annotated corpus to support biomedical information extraction [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 October 2009), 349. by Paul Thompson, Syed Iqbal, John McNaught, Sophia Ananiadou posted to syntax semantics semantic-roles information-extraction biomedical annotation by henk-cul to the group dbmi-nlp on 2009-10-28 18:23:48 as along with 3 people and 2 groups kshameer cisevol Effie BergmanLab NaCTeM
	In search of dialogue and discourse in applied clinical informatics [My Copy] Applied Clinical Informatics, Vol. 1, No. 1. (2009) by G. R. Kim, C. U. Lehman posted to overview medical-informatics information-technology definitions clinical-informatics by henk-cul to the group dbmi-nlp on 2009-10-23 18:57:40 as
	A Rule Based Approach to Discourse Parsing [My Copy] In Proceedings of the 5th SIGdial Workshop on Discourse and Dialogue (April 2004), pp. 108-117. by Livia Polanyi, Chris Culy, Martin van den Berg, Gian L. Thione, David Ahn edited by Michael Strube, Candy Sidner posted to rule-based discourse-parsing discourse by henk-cul to the group dbmi-nlp on 2009-10-20 16:35:03 as
	Introduction to Linguistic Annotation and Text Analytics [My Copy] (2009) by Graham Wilcock posted to xml uima stanford-tools opennlp gate annotation by henk-cul to the group dbmi-nlp on 2009-10-16 19:13:02 as
	A realistic assessment of methods for extracting gene/protein interactions from free text. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (28 July 2009), 233. by Renata Kabiljo, Andrew B. Clegg, Adrian J. Shepherd posted to tools text-mining relation-extraction protein-interactions named-entity-recognition by henk-cul to the group dbmi-nlp on 2009-10-08 16:19:48 as along with 11 people and 3 groups martingerner DTD102 satre farzanehs grahamc mitko sjcockell sillitoe andrewclegg cisevol barriot Journal picks Orengo Group Journal Picks BergmanLab
	Structuring and extracting knowledge for the support of hypothesis generation in molecular biology [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 10. (2009), S9. by Marco Roos, M. Scott Marshall, Andrew Gibson, et al.Martijn Schuemie, Edgar Meij, Sophia Katrenko, Willem van Hage, Konstantinos Krommydas, Pieter Adriaans posted to hypothesis-generation biomedical application by henk-cul to the group dbmi-nlp on 2009-10-07 20:41:18 as along with 5 people Keywan artaban421 lmichan druvus dullhunk
	Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. [My Copy] Academic medicine : journal of the Association of American Medical Colleges, Vol. 84, No. 7. (July 2009), pp. 964-970. by Elmer V. Bernstam, William R. Hersh, Stephen B. Johnson, et al.Christopher G. Chute, Hien Nguyen, Ida Sim, Meredith Nahm, Mark G. Weiner, Perry Miller, Robert P. DiLaura, Marc Overcash, Harold P. Lehmann, David Eichmann, Brian D. Athey, Richard H. Scheuermann, Nick Anderson, Justin Starren, Paul A. Harris, Jack W. Smith, Ed Barbour, Jonathan C. Silverstein, David A. Krusch, Rakesh Nagarajan, Michael J. Becich, CTSA Biomedical Informatics Key Function Committee posted to research-it overview operational-it information-technology informaticians by henk-cul to the group dbmi-nlp on 2009-10-02 18:04:28 as
	Clinical research informatics: challenges, opportunities and definition for an emerging domain. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 16, No. 3. (1 May 2009), pp. 316-327. by Peter J. Embi, Philip R. Payne posted to public-health-informatics overview clinical-research-informatics clinical-informatics biomedical-informatics bioinformatics by henk-cul to the group dbmi-nlp on 2009-10-02 18:01:32 as along with 1 person kharke
	Characterizing environmental and phenotypic associations using information theory and electronic health records [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 9. (2009), S13. by Xiaoyan Wang, George Hripcsak, Carol Friedman posted to relationships mutual-information data-processing-inequality by henk-cul to the group dbmi-nlp on 2009-10-01 16:01:42 as along with 1 person and 1 group Effie NaCTeM
	The first step in the development of text mining technology for cancer risk assessment: identifying and organizing scientific evidence in risk assessment literature. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (22 September 2009), 303. by Anna Korhonen, Ilona Silins, Lin Sun, Ulla Stenius posted to user-needs text-mining clinical cancer application by henk-cul to the group dbmi-nlp on 2009-10-01 15:59:28 as along with 1 person nuin
	Automatically Classifying Sentences in Full-Text Biomedical Arti-cles into Introduction, Methods, Results and Discussion. [My Copy] Bioinformatics (Oxford, England) (25 September 2009), btp548. by Shashank Agarwal, Hong Yu posted to sentence-classification by henk-cul to the group dbmi-nlp on 2009-10-01 15:57:51 as along with 3 people shashank_hi Gaetan lmichan
	Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease. [My Copy] BMC bioinformatics, Vol. 10 Suppl 9 (2009) by Brett R. South, Shuying Shen, Makoto Jones, et al.Jennifer Garvin, Matthew H. Samore, Wendy W. Chapman, Adi V. Gundlapalli posted to reference-standard annotation by henk-cul to the group dbmi-nlp on 2009-10-01 15:56:18 as
	EXCOM: an automatic annotation engine for semantic information [My Copy] In Flairs 2006 (2006) by B. Djioua, J. Garcia-Flores, A. Blais, et al.J. P. Desclés, Guibert, A. Jackiewicz, F. Le Priol, L. Nait-Baha, B. Sauzay posted to xml tool semantics linguistics excom contextual-features by henk-cul to the group dbmi-nlp on 2009-09-30 20:01:50 as
	Empirical distributional semantics: methods and biomedical applications. [My Copy] Journal of biomedical informatics, Vol. 42, No. 2. (13 April 2009), pp. 390-405. by Trevor Cohen, Dominic Widdows posted to word-meaning semantics semantic-relatedness biomedical applications by henk-cul to the group dbmi-nlp on 2009-09-22 15:31:47 as along with 4 people briordan mitko vlachmore dullhunk
	Automated recognition of brain region mentions in neuroscience literature. [My Copy] Frontiers in neuroinformatics, Vol. 3 (2009) by Leon French, Suzanne Lane, Lydia Xu, Paul Pavlidis posted to syntactic-features named-entity-recognition morphological-features machine-learning lexical-features crf by henk-cul to the group dbmi-nlp on 2009-09-21 15:43:13 as
	Calibrating Features for Semantic Role Labeling [My Copy] In EMNLP (2004) by Nianwen Xue, Martha Palmer posted to semantic-roles parsing machine-learning features by henk-cul to the group dbmi-nlp on 2009-09-16 20:11:43 as
	An effective Discourse Parser that uses Rich Linguistic Information [My Copy] In Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics (June 2009), pp. 566-574. by Rajen Subba, Barbara Di Eugenio posted to discourse-parsing discourse by henk-cul to the group dbmi-nlp on 2009-09-16 20:08:21 as
	Recognizing names in biomedical texts: a machine learning approach. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 7. (1 May 2004), pp. 1178-1190. by GuoDong Zhou, Jie Zhang, Jian Su, Dan Shen, ChewLim Tan posted to named-entity-recognition machine-learning k_nearest_neighbor hmm biomedical by henk-cul to the group dbmi-nlp on 2009-09-16 20:06:34 as along with 4 people and 2 groups svozil arafalov irenas farzanehs Bioinformatics dbk-lab
	An interactive and user-centered computer system to predict physician's disease judgments in discharge summaries. [My Copy] Journal of biomedical informatics (2 September 2009) by Jonathan P. Deshazo, Anne M. Turner posted to svm nlp i2b2 classification by henk-cul to the group dbmi-nlp on 2009-09-10 14:37:30 as
	Data Mining: Practical Machine Learing Tools and and Techniques [My Copy] (2005) by Ian H. Witten, Eibe Frank posted to weka machine-learning kappa-statistic by henk-cul to the group dbmi-nlp on 2009-09-02 02:05:45 as
	Experiments with Sentence Classification [My Copy] In Proceedings of the 2006 Australasian Language Technology Workshop (ALTW2006) (2006), pp. 18-25. by Anthony Khoo, Yuval Marom, David Albrecht posted to sentence-classification feature-selection by henk-cul to the group dbmi-nlp on 2009-08-22 16:26:19 as
	Novel opportunities for computational biology and sociology in drug discovery. [My Copy] Trends in biotechnology (10 August 2009) by Lixia Yao, James A. Evans, Andrey Rzhetsky posted to text-mining drug-discovery by henk-cul to the group dbmi-nlp on 2009-08-20 14:52:48 as along with 1 person guhjy
	What can natural language processing do for clinical decision support? [My Copy] Journal of Biomedical Informatics, Vol. 42, No. 5. (12 October 2009), pp. 760-772. by Dina Demner-Fushman, Wendy W. Chapman, Clement J. McDonald posted to review decision-support clinical by henk-cul to the group dbmi-nlp on 2009-08-20 14:49:22 as along with 1 person shashank_hi
	Sebastian Padó; Mirella Lapata Dependency-Based Construction of Semantic Space Models [My Copy] posted to semantic-space dependency-parsing by henk-cul to the group dbmi-nlp on 2009-08-19 14:55:28 as along with 1 person ednarofi
	Detecting Speculations and their Scopes in Scientific Text [My Copy] In Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing (August 2009), pp. 1398-1407. by Arzucan Özgür, Dragomir R. Radev posted to syntax speculation scope keywords by henk-cul to the group dbmi-nlp on 2009-08-14 15:06:15 as
	Themes in biomedical natural language processing: BioNLP08 [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 11. (2008), S1. by Dina D. Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie Webber posted to overview nlp biomedical by henk-cul to the group dbmi-nlp on 2009-08-14 15:03:39 as along with 1 person Effie
	Syntactic Dependency Based Heuristics for Biological Event Extraction [My Copy] In Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task (June 2009), pp. 119-127. by Halil Kilicoglu, Sabine Bergler posted to syntax-based event-extraction dependency-parsing by henk-cul to the group dbmi-nlp on 2009-08-14 15:02:42 as
	Exploring ways beyond the simple supervised learning approach for biological event extraction [My Copy] In Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task (June 2009), pp. 137-140. by György Móra, Richárd Farkas, György Szarvas, Zsolt Molnár posted to speculation rule-based negation machine-learning event-extraction by henk-cul to the group dbmi-nlp on 2009-08-14 15:01:39 as
	Unsupervised Learning of Narrative Event Chains [My Copy] In Proceedings of ACL-08: HLT (June 2008), pp. 789-797. by Nathanael Chambers, Dan Jurafsky posted to temporal-ordering mutual-information event-chains by henk-cul to the group dbmi-nlp on 2009-08-13 20:05:30 as
	Finding Contradictions in Text [My Copy] In Proceedings of ACL-08: HLT (June 2008), pp. 1039-1047. by Marie C. de Marneffe, Anna N. Rafferty, Christopher D. Manning posted to typology event-coreference contradictions by henk-cul to the group dbmi-nlp on 2009-08-13 20:03:05 as along with 1 person ednarofi
	Dimensions of Subjectivity in Natural Language [My Copy] In Proceedings of ACL-08: HLT, Short Papers (June 2008), pp. 13-16. by Wei Chen posted to vagueness subjectivity ambiguity by henk-cul to the group dbmi-nlp on 2009-08-13 20:01:11 as
	PubMed-EX: a web browser extension to enhance PubMed search with text mining features [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3031-3032. by Richard T. Tsai, Hong-Jie Dai, Po-Ting Lai, Chi-Hsin Huang posted to text-mining pubmed application by henk-cul to the group dbmi-nlp on 2009-08-12 14:44:32 as along with 17 people and 1 group jsatkosk reyez inesdesantiago dullhunk artaban421 lh49 biblio24 Zephyrus sebastien_vigneau thegoose thegoose3 Gaetan operon guhjy lmichan sjcockell druvus BergmanLab
	Getting Started in Text Mining: Part Two [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000411. by Andrey Rzhetsky, Michael Seringhaus, Mark B. Gerstein posted to applications text-mining tools by henk-cul to the group dbmi-nlp on 2009-08-05 23:59:15 as along with 14 people artaban421 sobolevnrm daforerog fgibson dullhunk guhjy kiekyon lmichan NIlz reyez dswan devindrown nuin druvus
	Introduction to the Special Issue on Summarization [My Copy] ACL, Vol. 28, No. 4. (2002) by Dragomir R. Radev, Kathleen Mckeown, Eduard Hovy posted to review summarization by henk-cul to the group dbmi-nlp on 2009-07-30 19:07:11 as
	Acquiring Correct Knowledge for Natural Language Generation [My Copy] Journal of Artificial Intelligence Research, Vol. 18 (2003), pp. 491-516. by Ehud Reiter, Somayajulu Sripada, Roma Robertson posted to knowledge-acquisition natural-language-generation smoking-cessation weather-forecasts by henk-cul to the group dbmi-nlp on 2009-07-30 19:02:09 as
	Text mining and natural language processing approaches for automatic categorization of lay requests to web-based expert forums. [My Copy] Journal of medical Internet research, Vol. 11, No. 3. (2009) by Wolfgang Himmel, Ulrich Reincke, Hans Wilhelm W. Michelmann posted to classification clinical medical nlp by henk-cul to the group dbmi-nlp on 2009-07-30 15:58:39 as along with 1 person yeminjiao
	Clinical text classification under the Open and Closed Topic Assumptions. [My Copy] International journal of data mining and bioinformatics, Vol. 3, No. 3. (2009), pp. 299-313. by Yutaka Sasaki, Brian Rea, Sophia Ananiadou posted to clinical closed-topic open-topic text-classification by henk-cul to the group dbmi-nlp on 2009-07-30 15:57:23 as
	Clinical validation of the AHRQ postoperative venous thromboembolism patient safety indicator. [My Copy] Joint Commission journal on quality and patient safety / Joint Commission Resources, Vol. 35, No. 7. (July 2009), pp. 370-376. by Katherine E. Henderson, Angela Recktenwald, Richard M. Reichley, et al.Thomas C. Bailey, Brian M. Waterman, Rebecca L. Diekemper, Patricia E. Storey, Belinda K. Ireland, Wm Claiborne C. Dunagan posted to ahrq clinical icd-9 nlp patient-safety-indicator safety by henk-cul to the group dbmi-nlp on 2009-07-30 15:55:57 as
	Feature Generation and Representations for Protein-Protein Interaction Classification. [My Copy] Journal of biomedical informatics (16 July 2009) by Man Lan, Jian Su, Chew Lim L. Tan posted to biomedical feature-engineering feature-representation nlp protein-interactions by henk-cul to the group dbmi-nlp on 2009-07-23 14:57:13 as
	Incorporating rich background knowledge for gene named entity classification and recognition [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (17 July 2009), 223. by Yanpeng Li, Hongfei Lin, Zhihao Yang posted to co-occurrence crf feature-coupling-generalization gene named-entity-recognition sparseness term-frequency by henk-cul to the group dbmi-nlp on 2009-07-23 14:55:06 as along with 2 people and 1 group druvus Effie NaCTeM
	Manual annotation of protein interactions. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 563 (2009), pp. 75-95. by S. Bureeva, S. Zvereva, V. Romanov, T. Serebryiskaya posted to annotation biomedical curation protein-interactions by henk-cul to the group dbmi-nlp on 2009-07-23 14:52:06 as along with 1 person kshameer
	Mining Protein-Protein Interactions from Published Literature Using Linguamatics I2E. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 563 (2009), pp. 3-13. by J. Bandy, D. Milward, S. McQuay posted to biomedical co-occurrence linguamatics linguistic-patterns proteins text-mining by henk-cul to the group dbmi-nlp on 2009-07-17 14:39:46 as along with 1 person zimbo1
	Assessing the validity of national quality measures for coronary artery disease using an electronic health record. [My Copy] Archives of internal medicine, Vol. 166, No. 20. (13 November 2006), pp. 2272-2277. by S. D. Persell, J. M. Wright, J. A. Thompson, K. S. Kmetik, D. W. Baker posted to quality-of-care by henk-cul to the group dbmi-nlp on 2009-07-16 18:07:04 as
	The Prevention Index: using technology to improve quality assessment. [My Copy] Health services research, Vol. 39, No. 3. (June 2004), pp. 511-530. by T. M. Vogt, M. Aickin, F. Ahmed, M. Schmidt posted to electronic-medical-record quality-assessment by henk-cul to the group dbmi-nlp on 2009-07-15 22:33:53 as
	Crossing the Quality Chasm: A New Health System for the 21st Century [My Copy] (18 July 2001) by Committee On Quality Of Health Care In America, Institute O. Medicine posted to health-care quality by henk-cul to the group dbmi-nlp on 2009-07-15 22:28:30 as along with 1 person simdoc
	Natural language processing in the electronic medical record: assessing clinician adherence to tobacco treatment guidelines. [My Copy] American journal of preventive medicine, Vol. 29, No. 5. (December 2005), pp. 434-439. by B. Hazlehurst, D. F. Sittig, V. J. Stevens, et al.K. S. Smith, J. F. Hollis, T. M. Vogt, J. P. Winickoff, R. Glasgow, T. E. Palen, N. A. Rigotti posted to guidelines nlp quality tobacco by henk-cul to the group dbmi-nlp on 2009-07-15 20:25:01 as
	Quality performance measurement using the text of electronic medical records. [My Copy] Medical decision making : an international journal of the Society for Medical Decision Making, Vol. 28, No. 4. (1 July 2008), pp. 462-470. by S. Pakhomov, S. Bjornsen, P. Hanson, S. Smith posted to foot-examinations quality by henk-cul to the group dbmi-nlp on 2009-07-15 20:21:22 as along with 1 person MGHPIDIV

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user-needs	1
vagueness	1
vector-space-model	1
viewpoint-paper	1
voting	1
weather-forecasts	1
web	1
word-clustering	1
word-meaning	1

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