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Group: dbmi-nlp - library [103 articles]

Recent papers posted by members of the dbmi-nlp group
  • Reconstructing Medical Dictations from Automatically Recognized and Non-Literal Transcripts with Phonetic Similarity Matching
    Acoustics, Speech and Signal Processing, 2007. ICASSP 2007. IEEE International Conference on, Vol. 4 (2007), pp. IV-1125-IV-1128.
    by S Petrik, G Kubin
    posted to speech-recognition by henk-cul to the group dbmi-nlp on 2008-10-09 19:27:09 as **
  • Evaluation of Medical Problem Extraction from Electronic Clinical Documents Using MetaMap Transfer (MMTx).
    Stud Health Technol Inform, Vol. 116 (2005), pp. 823-828.
    by S Meystre, PJ Haug
    posted to tools lexicons by henk-cul to the group dbmi-nlp on 2008-10-02 01:29:53 as ** along with 4 people and 1 group smeystre basetta kkaiser diogomartins IEG
  • Mining biomedical data using MetaMap Transfer (MMtx) and the Unified Medical Language System (UMLS).
    Methods in molecular biology (Clifton, N.J.), Vol. 408 (2007), pp. 153-169.
    by JD Osborne, S Lin, L Zhu, WA Kibbe
    posted to tools by henk-cul to the group dbmi-nlp on 2008-10-02 01:27:50 as ***
  • Knowledge-based query expansion to support scenario-specific retrieval of medical free text
    (2005), pp. 1076-1083.
    by Zhenyu Liu, Wesley W Chu
    posted to query-expansion nlp ir clinical-text by hpiwowar to the group dbmi-nlp on 2008-09-26 19:01:28 as ** along with 1 person ctl
  • A Bidirectional Grammar-Based Medical Speech Translator.
    In Proceedings of workshop on Grammar-based approaches to spoken language processing, ACL 2007, June 29, Prague, Czech Republic (2007)
    by P Bouillon, G Flores, M Starlander, N Chatzichrisafis, M Santaholma, N Tsourakis, M Rayner, BA Hockey
    posted to speech_recognition grammar by wchapman to the group dbmi-nlp on 2008-09-25 21:15:05 as read
  • Chocolate bar as an incentive did not increase response rate among physiotherapists: a randomised controlled trial
    BMC Research Notes, Vol. 1, No. 1. (2008)
    by Gro Jamtvedt, Sarah Rosenbaum, Kristin Dahm, Signe Flottorp
    posted to evaluation chocolate annotation all by hpiwowar to the group dbmi-nlp on 2008-09-24 22:02:57 as read
  • Event Representation in Temporal and Geographic Context
    Research and Advanced Technology for Digital Libraries (2008), pp. 415-418.
    by Ryan Shaw, Ray Larson
    posted to temporal-annotation nlp by hpiwowar to the group dbmi-nlp on 2008-09-18 16:00:24 as **
  • TimeML: Robust Specification of Event and Temporal Expression in Text
    IWCS-5, Fifth International Workshop on Computational Semantics. (2003)
    by J Pustejovsky, J Castano, R Ingria, R Sauri, R Gauzauskas, A Setzer, G Katz
    posted to temporal annotation by wchapman to the group dbmi-nlp on 2008-09-18 15:45:32 as read
  • Using regular expressions to abstract blood pressure and treatment intensification information from the text of physician notes.
    Journal of the American Medical Informatics Association : JAMIA, Vol. 13, No. 6. (c 2006), pp. 691-695.
    by A Turchin, NS Kolatkar, RW Grant, EC Makhni, ML Pendergrass, JS Einbinder
    posted to regular-expressions nlp ie evaluation clinical-text all by hpiwowar to the group dbmi-nlp on 2008-09-09 19:14:34 as **
  • Event Extraction and Temporal Reasoning in Legal Documents
    Annotating, Extracting and Reasoning about Time and Events (2007), pp. 59-71.
    by Frank Schilder
    posted to temporal-modeling by henk-cul to the group dbmi-nlp on 2008-09-08 17:24:34 as **
  • Modelling Space and Time in Narratives about Restaurants
    Literary and Linguistic Computing, Vol. 22, No. 1. (April 2007), pp. 67-84.
    by Mueller, T Erik
    posted to temporality by henk-cul to the group dbmi-nlp on 2008-09-08 17:01:58 as ** along with 2 people and 2 groups eitelman xavioro Temporality narrative
  • Assigning time-stamps to event-clauses
    (2001)
    by Elena Filatova, Eduard Hovy
    posted to temporality annotation by Belle1 to the group dbmi-nlp on 2008-09-06 01:25:17 as *****
  • Shallow parsing using noisy and non-stationary training material
    J. Mach. Learn. Res., Vol. 2 (2002), pp. 695-719.
    by Miles Osborne
    posted to all annotation evaluation machine-learning nlp by hpiwowar to the group dbmi-nlp on 2008-08-05 17:48:27 as **
  • Active Learning and the Total Cost of Annotation
    posted to active-learning all annotation evaluation nlp by hpiwowar to the group dbmi-nlp on 2008-08-05 17:39:30 as **
  • Evaluation of a method that supports pathology report coding.
    Methods of information in medicine, Vol. 40, No. 4. (2001), pp. 293-297.
    by A Hasman, LM de Bruijn, JW Arends
    posted to encoding nlp-assistance pathology by henk-cul to the group dbmi-nlp on 2008-08-02 21:39:26 as **
  • Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection
    (June 2008), pp. 30-37.
    by Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
    posted to active-learning all nlp by hpiwowar to the group dbmi-nlp on 2008-07-31 15:51:18 as **
  • Natural Language Processing in aid of FlyBase curators
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Nikiforos Karamanis, Ruth Seal, Ian Lewin, Peter Mcquilton, Andreas Vlachos, Caroline Gasperin, Rachel Drysdale, Ted Briscoe
    posted to all curation databases data-quality data-sharing nlp by hpiwowar to the group dbmi-nlp on 2008-07-31 15:41:48 as *** along with 2 people vlachmore Gaetan
  • Active Annotation
    (2006)
    by Andreas Vlachos
    posted to active-learning all annotation machine-learning nlp semi-supervised by hpiwowar to the group dbmi-nlp on 2008-07-31 15:39:17 as **** along with 2 people vlachmore henk-cul
  • Extracting subject demographic information from abstracts of randomized clinical trial reports.
    Studies in health technology and informatics, Vol. 129, No. Pt 1. (2007), pp. 550-554.
    by R Xu, Y Garten, KS Supekar, AK Das, RB Altman, AM Garber
    posted to clinical-trial by henk-cul to the group dbmi-nlp on 2008-07-29 20:39:51 as **
  • Enabling integrative genomic analysis of high-impact human diseases through text mining.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 580-591.
    by J Dudley, AJ Butte
    posted to biomedical relation-extraction by henk-cul to the group dbmi-nlp on 2008-07-29 15:34:38 as ** along with 2 people jyuh hpiwowar
  • Electronic Medical Records for Clinical Research: Application to the Identification of Heart Failure
    Am J Manag Care (2007)
    by S Pakhomov, SA Weston, SJ Jacobsen, CG Chute, R Meverden, VL Roger
    posted to clinical-trial by henk-cul to the group dbmi-nlp on 2008-07-28 17:48:10 as **
  • Assisted curation: does text mining really help?
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 556-567.
    by B Alex, C Grover, B Haddow, M Kabadjov, E Klein, M Matthews, S Roebuck, R Tobin, X Wang
    posted to biomedical nlp-assistance by henk-cul to the group dbmi-nlp on 2008-07-28 16:14:17 as ** along with 1 person satre
  • Randomized controlled trial of an automated problem list with improved sensitivity.
    International journal of medical informatics, Vol. 77, No. 9. (September 2008), pp. 602-612.
    by SM Meystre, PJ Haug
    posted to ie medical by henk-cul to the group dbmi-nlp on 2008-07-25 16:18:31 as **
  • Natural language processing using online analytic processing for assessing recommendations in radiology reports.
    Journal of the American College of Radiology : JACR, Vol. 5, No. 3. (March 2008), pp. 197-204.
    by PA Dang, MK Kalra, MA Blake, TJ Schultz, M Stout, PR Lemay, DJ Freshman, EF Halpern, KJ Dreyer
    posted to classification medical radiology by henk-cul to the group dbmi-nlp on 2008-07-25 16:15:59 as **
  • Association of genes to genetically inherited diseases using data mining
    Nature Genetics, Vol. 31 (2002)
    by Carolina Perez-Iratxeta, Peer Bork, Miguel A Andrade
    posted to biomedical co-occurrence relation-extraction by henk-cul to the group dbmi-nlp on 2008-07-24 16:15:40 as **
  • Using literature-based discovery to identify disease candidate genes
    International Journal of Medical Informatics, Vol. 74 (2005)
    by Dimitar Hristovskia, Borut Peterlin, Joyce A Mitchell, Susanne M Humphrey
    posted to biomedical co-occurrence relation-extraction by henk-cul to the group dbmi-nlp on 2008-07-24 16:12:11 as **
  • Frontiers of biomedical text mining: current progress
    Briefings in Bioinformatics (2007)
    by Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin B Cohen
    posted to biomedical review by henk-cul to the group dbmi-nlp on 2008-07-24 15:45:15 as read along with 1 person gilesc
  • On Textual Documents Classification Using Fourier Domain Scoring
    posted to classification learning machine text by saeed2 to the group dbmi-nlp on 2008-07-21 18:15:49 as read along with 1 person henk-cul
  • A new text mining approach for finding protein-to-disease associations
    Am J Biochem Biotechnol, No. 1. (2005)
    by H Al-Mubaid, RK Singh
    posted to biomedical bionlp co-occurrence relation-extraction by henk-cul to the group dbmi-nlp on 2008-07-16 21:55:06 as **
  • A literature based method for identifying gene-disease connections
    by LA Adamic
    posted to biomedical bionlp co-occurrence relation-extraction by henk-cul to the group dbmi-nlp on 2008-07-16 21:52:58 as ***
  • Weakly Supervised Learning for Hedge Classification in Scientific Literature
    by Ben Medlock, Ted Briscoe
    posted to biomedical contextual-features by henk-cul to the group dbmi-nlp on 2008-07-14 16:19:25 as ** along with 1 person and 1 group ejmeij ilps
  • Using Neutral Examples for Learning Polarity
    by Moshe Koppel, Jonathan Schler
    posted to contextual-features polarity by henk-cul to the group dbmi-nlp on 2008-07-14 16:06:21 as **
  • Hedge Classification in Biomedical Texts with a Weakly Supervised Selection of Keywords
    by Gyorgy Szarvas
    posted to contextual-features machine-learning by henk-cul to the group dbmi-nlp on 2008-07-09 19:51:10 as **
  • An Entity-Mention Model for Coreference Resolution with Inductive Logic Programming
    (June 2008), pp. 843-851.
    by Xiaofeng Yang, Jian Su, Jun Lang, Chew L Tan, Ting Liu, Sheng Li
    posted to coreference inductive_logic_programming by wchapman to the group dbmi-nlp on 2008-06-24 18:56:15 as **** along with 1 person and 1 group henk-cul Coreference Resolution
  • Natural Language Processing and Temporal Information Extraction in Emergency Department Triage Notes.
    (2008)
    by A Irvine, S Haas
    posted to nlp temporal by wchapman to the group dbmi-nlp on 2008-05-15 21:51:23 as **
  • An Empirical Approach to Conceptual Case Frame Acquisition
    by Ellen Riloff, Mark Schmelzenbach
    posted to autoslog case-frame information-extraction by lmc61 to the group dbmi-nlp on 2008-05-06 19:37:13 as *** along with 1 person henk-cul
  • DNA, diseases and databases: disastrously deficient
    Trends in Genetics, Vol. 21, No. 6. (June 2005), pp. 333-338.
    by George P Patrinos, Anthony J Brookes
    posted to all databases data-reuse data-sharing funding policies publishing by hpiwowar to the group dbmi-nlp on 2008-05-03 19:12:01 as ** along with 1 person Nilza
  • Automatic Classification of Foot Examination Findings Using Clinical Notes and Machine Learning
    J Am Med Inform Assoc, Vol. 15, No. 2. (1 March 2008), pp. 198-202.
    by Serguei V Pakhomov, Penny L Hanson, Susan S Bjornsen, Steven A Smith
    posted to nlp by jeannie27 to the group dbmi-nlp on 2008-04-15 22:40:40 as *** along with 1 person henk-cul
  • Evaluation of Coreferences and Coreference Resolution Systems
    (1998)
    by B Amit
    posted to annotation coreference by wchapman to the group dbmi-nlp on 2008-04-14 19:56:36 as ****
  • Neurolinguistic Approach to Natural Language Processing with Applications to Medical Text Analysis
    Neurolinguistics (2008), in press.
    by J Pestian
    posted to neurolinguistics nlp semantic_network by wchapman to the group dbmi-nlp on 2008-04-10 16:00:05 as **** along with 1 person henk-cul
  • Coreference Resolution: A Survey
    posted to coreference by wchapman to the group dbmi-nlp on 2008-04-04 22:45:17 as read
  • Discourse Processing for Scientific Papers
    (2007)
    by Simone Teufel
    posted to all citation-classification cues discourse nlp by hpiwowar to the group dbmi-nlp on 2008-03-18 16:52:43 as ** along with 1 person henk-cul
  • Empirical data on corpus design and usage in biomedical natural language processing.
    AMIA Annu Symp Proc (2005), pp. 156-160.
    by KB Cohen, L Fox, PV Ogren, L Hunter
    posted to all biomedical-literature corpra data-reusability evaluation nlp reuse by hpiwowar to the group dbmi-nlp on 2008-03-18 15:35:21 as read along with 3 people and 1 group helliontroy lynnefox balex biomedical-nlp
  • Rapid pattern development for concept recognition systems: application to point mutations.
    J Bioinform Comput Biol, Vol. 5, No. 6. (December 2007), pp. 1233-1259.
    by JG Caporaso, WA Baumgartner, DA Randolph, KB Cohen, L Hunter
    posted to all biomedical-literature concept-recognition corpus-construction full-text information-extraction nlp pattern-learning text-mining by hpiwowar to the group dbmi-nlp on 2008-03-18 15:30:05 as ***
  • A simple algorithm for identifying negated findings and diseases in discharge summaries.
    J Biomed Inform, Vol. 34, No. 5. (October 2001), pp. 301-310.
    by WW Chapman, W Bridewell, P Hanbury, GF Cooper, BG Buchanan
    posted to all nlp by hpiwowar to the group dbmi-nlp on 2008-03-11 13:02:28 as ** along with 3 people and 1 group route145 kkaiser farzanehs IEG
  • The CLEF Corpus: Semantic Annotation of Clinical Text
    (November 2007), pp. 625-629.
    by A Roberts, R Gaizauskas, M Hepple, N Davis, G Demetriou, Y Guo, J Kola, I Roberts, A Setzer, A Tapuria, B Wheeldin
    edited by JM Teich, J Suermondt, G Hripcsak
    posted to annotation medical nlp by henk-cul to the group dbmi-nlp on 2008-03-10 15:37:50 as **
  • Exploring hedge identification in biomedical literature.
    J Biomed Inform (11 January 2008)
    by Ben Medlock
    posted to nlp by hpiwowar to the group dbmi-nlp on 2008-03-06 23:33:54 as ** along with 1 person dullhunk
  • NLTK: The Natural Language Toolkit
    (17 May 2002)
    by Edward Loper, Steven Bird
    posted to all nlp nltk prefered-tool-reference tools by hpiwowar to the group dbmi-nlp on 2008-03-03 16:01:00 as **
  • Data Mining: Practical Machine Learning Tools and Techniques with Java Implementations
    (11 October 1999)
    by Ian H Witten, Eibe Frank
    posted to all machine-learning nlp prefered-tool-reference tools weka by hpiwowar to the group dbmi-nlp on 2008-03-03 15:54:10 as ** along with 16 people and 3 groups derek_farn sb-3000 ujh aalibes ChaTo 4vgacias ergodique gboleda pailun caomo donade roland_ewald girschick wkiri dquercia yaroslavvb AI dIEMoSIRIS MoSi-Rostock
  • Supporting CSCL with automatic corpus analysis technology
    (2005), pp. 125-134.
    by Pinar Dönmez, Carolyn Rosé, Karsten Stegmann, Armin Weinberger, Frank Fischer
    posted to all nlp text-categorization tools weka by hpiwowar to the group dbmi-nlp on 2008-03-03 15:48:57 as **
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