Group: dbmi-nlp - library 411 articles Export

	EXCOM: an automatic annotation engine for semantic information [My Copy] In Flairs 2006 (2006) by B. Djioua, J. Garcia-Flores, A. Blais, et al.J. P. Desclés, Guibert, A. Jackiewicz, F. Le Priol, L. Nait-Baha, B. Sauzay posted to xml tool semantics linguistics excom contextual-features by henk-cul to the group dbmi-nlp on 2009-09-30 20:01:50 as
	What can natural language processing do for clinical decision support? [My Copy] Journal of Biomedical Informatics, Vol. 42, No. 5. (12 October 2009), pp. 760-772. by Dina Demner-Fushman, Wendy W. Chapman, Clement J. McDonald posted to review decision-support clinical by henk-cul to the group dbmi-nlp on 2009-08-20 14:49:22 as along with 1 person shashank_hi
	Detecting Speculations and their Scopes in Scientific Text [My Copy] In Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing (August 2009), pp. 1398-1407. by Arzucan Özgür, Dragomir R. Radev posted to syntax speculation scope keywords by henk-cul to the group dbmi-nlp on 2009-08-14 15:06:15 as
	Themes in biomedical natural language processing: BioNLP08 [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 11. (2008), S1. by Dina D. Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie Webber posted to overview nlp biomedical by henk-cul to the group dbmi-nlp on 2009-08-14 15:03:39 as along with 2 people eesruiz Effie
	Informatics in Radiology: Render: An Online Searchable Radiology Study Repository. [My Copy] Radiographics : a review publication of the Radiological Society of North America, Inc (29 June 2009) by Pragya A. Dang, Mannudeep K. Kalra, Thomas J. Schultz, Steven A. Graham, Keith J. Dreyer posted to nlp radiology render by henk-cul to the group dbmi-nlp on 2009-07-03 15:09:13 as
	Learning the Scope of Hedge Cues in Biomedical Texts [My Copy] In Proceedings of the BioNLP 2009 Workshop (June 2009), pp. 28-36. by Roser Morante, Walter Daelemans posted to biomedical contextual-features hedging scope by henk-cul to the group dbmi-nlp on 2009-06-18 16:43:56 as
	The value of parsing as feature generation for gene mention recognition [My Copy] Journal of Biomedical Informatics (02 April 2009) by Larry H. Smith, John W. Wilbur posted to dependency-relations evaluation gene-mention genetag named-entity-recognition parsing by henk-cul to the group dbmi-nlp on 2009-06-09 14:58:16 as
	Syntactic complexity measures for detecting Mild Cognitive Impairment [My Copy] In Biological, translational, and clinical language processing (June 2007), pp. 1-8. by Brian Roark, Margaret Mitchell, Kristy Hollingshead posted to cognition parsing by henk-cul to the group dbmi-nlp on 2009-05-07 16:25:18 as
	Text mining in healthcare. Applications and opportunities. [My Copy] Journal of healthcare information management : JHIM, Vol. 22, No. 3. (2008), pp. 52-56. by U. Raja, T. Mitchell, T. Day, J. M. Hardin posted to clinical review text-mining by henk-cul to the group dbmi-nlp on 2009-03-23 14:41:28 as along with 2 people and 1 group Effie liblab NaCTeM
	Assigning time-stamps to event-clauses [My Copy] (2001) by Elena Filatova, Eduard Hovy posted to annotation temporality by Belle1 to the group dbmi-nlp on 2008-09-06 01:25:17 as
	Identifying patient smoking status from medical discharge records. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 15, No. 1. (1 January 2008), pp. 14-24. by O. Uzuner, I. Goldstein, Y. Luo, I. Kohane posted to all i2b2-smoking nlp by wchapman to the group dbmi-nlp on 2008-01-17 21:22:14 as along with 2 people anoop_kunchukuttan henk-cul
	Linguistic feature analysis for protein interaction extraction [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 374. by Timur Fayruzov, Martine De Cock, Chris Cornelis, Veronique Hoste posted to syntactic-features protein-protein-interaction grammatical-relations by henk-cul to the group dbmi-nlp on 2009-11-28 17:40:58 as
	Clinical research informatics: challenges, opportunities and definition for an emerging domain. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 16, No. 3. (1 May 2009), pp. 316-327. by Peter J. Embi, Philip R. Payne posted to public-health-informatics overview clinical-research-informatics clinical-informatics biomedical-informatics bioinformatics by henk-cul to the group dbmi-nlp on 2009-10-02 18:01:32 as along with 2 people and 1 group Effie kharke NaCTeM
	Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease. [My Copy] BMC bioinformatics, Vol. 10 Suppl 9 (2009) by Brett R. South, Shuying Shen, Makoto Jones, et al.Jennifer Garvin, Matthew H. Samore, Wendy W. Chapman, Adi V. Gundlapalli posted to reference-standard annotation by henk-cul to the group dbmi-nlp on 2009-10-01 15:56:18 as
	Automated recognition of brain region mentions in neuroscience literature. [My Copy] Frontiers in neuroinformatics, Vol. 3 (2009) by Leon French, Suzanne Lane, Lydia Xu, Paul Pavlidis posted to syntactic-features named-entity-recognition morphological-features machine-learning lexical-features crf by henk-cul to the group dbmi-nlp on 2009-09-21 15:43:13 as
	Code Red [My Copy] Washington Monthly (July 2009) by Phillip Longman posted to health-care information-technology open-source proprietary-systems quality by henk-cul to the group dbmi-nlp on 2009-07-15 14:53:40 as
	Multi-modal presentation of medical histories [My Copy] In IUI '08: Proceedings of the 13th international conference on Intelligent user interfaces (2008), pp. 80-89. by Catalina Hallett posted to clinical images nlp summaries by henk-cul to the group dbmi-nlp on 2009-07-08 22:54:27 as along with 3 people Scis0000002 camargoj fryanpan
	Semantic classification of diseases in discharge summaries using a context-aware rule-based classifier [My Copy] J Am Med Inform Assoc (23 April 2009), M3087. by Illes Solt, Domonkos Tikk, Viktor Gal, Zsolt T. Kardkovacs posted to contextual-features i2b2 by henk-cul to the group dbmi-nlp on 2009-06-30 19:36:40 as
	TEXT2TABLE: Medical Text Summarization System Based on Named Entity Recognition and Modality Identification [My Copy] In Proceedings of the BioNLP 2009 Workshop (June 2009), pp. 185-192. by Eiji Aramaki, Yasuhide Miura, Masatsugu Tonoike, Tomoko Ohkuma, Hiroshi Mashuichi, Kazuhiko Ohe posted to clinical contextual-features medical modality named-entity-recognition by henk-cul to the group dbmi-nlp on 2009-06-18 16:54:26 as
	Incorporating Syntactic Dependency Information towards Improved Coding of Lengthy Medical Concepts in Clinical Reports [My Copy] In Proceedings of the BioNLP 2009 Workshop (June 2009), pp. 125-132. by Vijayaraghavan Bashyam, Ricky K. Taira posted to clinical-text dependency-parsing dependency-relations parsing syntax by henk-cul to the group dbmi-nlp on 2009-06-18 16:48:25 as
	Investigation of Unsupervised Pattern Learning Techniques for Bootstrap Construction of a Medical Treatment Lexicon [My Copy] In Proceedings of the BioNLP 2009 Workshop (June 2009), pp. 63-70. by Rong Xu, Alexander A. Morgan, Amar Das, Alan Garber posted to lexicon lexicon-construction medical pattern-learning unsupervised by henk-cul to the group dbmi-nlp on 2009-06-18 16:45:14 as
	Automatic annotation of context and speech acts for dialogue corpora [My Copy] Natural Language Engineering, Vol. 15, No. 03. (2009), pp. 315-353. by Kallirroi Georgila, Oliver Lemon, James Henderson, Johanna D. Moore posted to annotation dialogue speech speech-acts by henk-cul to the group dbmi-nlp on 2009-06-08 15:00:22 as
	Bayesian networks for knowledge discovery in large datasets: basics for nurse researchers [My Copy] Journal of Biomedical Informatics, Vol. 36, No. 4-5. (October 2003), pp. 389-399. by S. Lee posted to bayesian clinical review by henk-cul to the group dbmi-nlp on 2009-05-09 00:10:49 as
	Discourse structures in medical reports--watch out! The generation of referentially coherent and valid text knowledge bases in the MEDSYNDIKATE system. [My Copy] International journal of medical informatics, Vol. 53, No. 1. (January 1999), pp. 1-28. by U. Hahn, M. Romacker, S. Schulz posted to coreference-resolution discourse ellipsis medical by henk-cul to the group dbmi-nlp on 2009-05-07 17:52:12 as
	Improved Identification of Noun Phrases in Clinical Radiology Reports Using a High-Performance Statistical Natural Language Parser Augmented with the UMLS Specialist Lexicon [My Copy] J Am Med Inform Assoc, Vol. 12, No. 3. (1 May 2005), pp. 275-285. by Yang Huang, Henry J. Lowe, Dan Klein, Russell J. Cucina posted to chunking parsing umls by henk-cul to the group dbmi-nlp on 2009-05-07 17:47:43 as along with 1 person ville
	Measurement of observer agreement. [My Copy] Radiology, Vol. 228, No. 2. (August 2003), pp. 303-308. by H. L. Kundel, M. Polansky posted to agreement statistics by henk-cul to the group dbmi-nlp on 2009-02-27 19:14:58 as along with 2 people Borelli maddin
	Active Annotation [My Copy] In Proceedings of ATEM in EACL06 (2006) by Andreas Vlachos posted to active-learning all annotation machine-learning nlp semi-supervised by hpiwowar to the group dbmi-nlp on 2008-07-31 15:39:17 as along with 2 people vlachmore henk-cul
	An Entity-Mention Model for Coreference Resolution with Inductive Logic Programming [My Copy] In Proceedings of ACL-08: HLT (June 2008), pp. 843-851. by Xiaofeng Yang, Jian Su, Jun Lang, Chew L. Tan, Ting Liu, Sheng Li posted to coreference inductive_logic_programming by wchapman to the group dbmi-nlp on 2008-06-24 18:56:15 as along with 2 people and 1 group jpzheng henk-cul Coreference Resolution
	Evaluation of Coreferences and Coreference Resolution Systems [My Copy] (1998) by B. Amit posted to annotation coreference by wchapman to the group dbmi-nlp on 2008-04-14 19:56:36 as
	Neurolinguistic Approach to Natural Language Processing with Applications to Medical Text Analysis [My Copy] Neurolinguistics (2008), in press. by J. Pestian posted to neurolinguistics nlp semantic_network by wchapman to the group dbmi-nlp on 2008-04-10 16:00:05 as along with 1 person henk-cul
	Domain Adaptation with Structural Correspondence Learning [My Copy] In Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing (July 2006), pp. 120-128. by John Blitzer, Ryan Mcdonald, Fernando Pereira posted to adaptation nll parsing by student_t to the group dbmi-nlp on 2008-02-14 19:29:36 as along with 1 person vlachmore
	New directions in biomedical text annotation: definitions, guidelines and corpus construction [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (25 July 2006), 356. by W. John Wilbur, Andrey Rzhetsky, Hagit Shatkay posted to annotation literature by wchapman to the group dbmi-nlp on 2008-02-06 04:24:12 as along with 8 people and 1 group artaban421 lmichan liblab henk-cul fisherp helliontroy jacky957 balex biomedical-nlp
	Corpus annotation for mining biomedical events from literature [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 10. by Jin D. Kim, Tomoko Ohta, Jun'ichi Tsujii posted to annotation literature nlp by wchapman to the group dbmi-nlp on 2008-01-15 19:31:35 as along with 15 people and 1 group satre kekeeo arafalov Cluster guhjy yas dullhunk bhaddow sobolevnrm gmonce vlachmore mircea henk-cul gilesc aliekens baker-group
	An alternative to the hand searching gold standard: validating methodological search filters using relative recall. [My Copy] BMC medical research methodology, Vol. 6 (18 July 2006), 33. by Margaret Sampson, Li Zhang, Andra Morrison, et al.Nicholas J. Barrowman, Tammy J. Clifford, Robert W. Platt, Terry P. Klassen, David Moher posted to all evaluation method nlp research-ideas by hpiwowar to the group dbmi-nlp on 2007-11-29 03:02:12 as along with 4 people radagabriel msampson A_Hoogendam Carol_Perryman
	Beyond genes, proteins, and abstracts: Identifying scientific claims from full-text biomedical articles. [My Copy] Journal of biomedical informatics (6 November 2009) by Catherine Blake posted to syntactic-features semantic-features relation-extraction observations evidence correlations comparison claims biomedical by henk-cul to the group dbmi-nlp on 2009-11-11 17:29:39 as
	Feature Selection for Text Classification [My Copy] In Computational Methods of Feature Selection (2007) by George Forman edited by Huan Liu, Huan Motoda posted to text-classification n-grams feature-selection character-n-grams by henk-cul to the group dbmi-nlp on 2009-11-09 15:30:52 as
	The Role of Information Technology in Medical Research [My Copy] In 2009 Atlanta Conference on Science, Technology and Innovation Policy (2009) by Daniel Castro posted to usa uk overview nhs medical-research health-informatics by henk-cul to the group dbmi-nlp on 2009-10-29 16:42:08 as
	Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D. [My Copy] Bioinformatics (Oxford, England) (22 October 2009), btp602. by Yun Niu, David Otasek, Igor Jurisica posted to protein-interactions features feature-evaluation by henk-cul to the group dbmi-nlp on 2009-10-28 18:25:08 as along with 1 person druvus
	Construction of an annotated corpus to support biomedical information extraction [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 October 2009), 349. by Paul Thompson, Syed Iqbal, John McNaught, Sophia Ananiadou posted to syntax semantics semantic-roles information-extraction biomedical annotation by henk-cul to the group dbmi-nlp on 2009-10-28 18:23:48 as along with 3 people and 2 groups kshameer cisevol Effie BergmanLab NaCTeM
	In search of dialogue and discourse in applied clinical informatics [My Copy] Applied Clinical Informatics, Vol. 1, No. 1. (2009) by G. R. Kim, C. U. Lehman posted to overview medical-informatics information-technology definitions clinical-informatics by henk-cul to the group dbmi-nlp on 2009-10-23 18:57:40 as
	Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. [My Copy] Academic medicine : journal of the Association of American Medical Colleges, Vol. 84, No. 7. (July 2009), pp. 964-970. by Elmer V. Bernstam, William R. Hersh, Stephen B. Johnson, et al.Christopher G. Chute, Hien Nguyen, Ida Sim, Meredith Nahm, Mark G. Weiner, Perry Miller, Robert P. DiLaura, Marc Overcash, Harold P. Lehmann, David Eichmann, Brian D. Athey, Richard H. Scheuermann, Nick Anderson, Justin Starren, Paul A. Harris, Jack W. Smith, Ed Barbour, Jonathan C. Silverstein, David A. Krusch, Rakesh Nagarajan, Michael J. Becich, CTSA Biomedical Informatics Key Function Committee posted to research-it overview operational-it information-technology informaticians by henk-cul to the group dbmi-nlp on 2009-10-02 18:04:28 as
	The first step in the development of text mining technology for cancer risk assessment: identifying and organizing scientific evidence in risk assessment literature. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (22 September 2009), 303. by Anna Korhonen, Ilona Silins, Lin Sun, Ulla Stenius posted to user-needs text-mining clinical cancer application by henk-cul to the group dbmi-nlp on 2009-10-01 15:59:28 as along with 1 person nuin
	Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3174-3180. by Shashank Agarwal, Hong Yu posted to sentence-classification by henk-cul to the group dbmi-nlp on 2009-10-01 15:57:51 as along with 4 people and 1 group artaban421 shashank_hi Gaetan lmichan Journal picks
	Empirical distributional semantics: methods and biomedical applications. [My Copy] Journal of biomedical informatics, Vol. 42, No. 2. (13 April 2009), pp. 390-405. by Trevor Cohen, Dominic Widdows posted to word-meaning semantics semantic-relatedness biomedical applications by henk-cul to the group dbmi-nlp on 2009-09-22 15:31:47 as along with 5 people artaban421 briordan mitko vlachmore dullhunk
	An interactive and user-centered computer system to predict physician's disease judgments in discharge summaries. [My Copy] Journal of biomedical informatics (2 September 2009) by Jonathan P. Deshazo, Anne M. Turner posted to svm nlp i2b2 classification by henk-cul to the group dbmi-nlp on 2009-09-10 14:37:30 as
	Experiments with Sentence Classification [My Copy] In Proceedings of the 2006 Australasian Language Technology Workshop (ALTW2006) (2006), pp. 18-25. by Anthony Khoo, Yuval Marom, David Albrecht posted to sentence-classification feature-selection by henk-cul to the group dbmi-nlp on 2009-08-22 16:26:19 as
	Feature Generation and Representations for Protein-Protein Interaction Classification. [My Copy] Journal of biomedical informatics (16 July 2009) by Man Lan, Jian Su, Chew Lim L. Tan posted to biomedical feature-engineering feature-representation nlp protein-interactions by henk-cul to the group dbmi-nlp on 2009-07-23 14:57:13 as
	Quality performance measurement using the text of electronic medical records. [My Copy] Medical decision making : an international journal of the Society for Medical Decision Making, Vol. 28, No. 4. (1 July 2008), pp. 462-470. by S. Pakhomov, S. Bjornsen, P. Hanson, S. Smith posted to foot-examinations quality by henk-cul to the group dbmi-nlp on 2009-07-15 20:21:22 as along with 1 person MGHPIDIV
	The BioScope corpus: annotation for negation, uncertainty and their scope in biomedical texts [My Copy] In Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (June 2008), pp. 38-45. by György Szarvas, Veronika Vincze, Richárd Farkas, János Csirik posted to biomedical bioscope clinical hedging negation scope uncertainty by henk-cul to the group dbmi-nlp on 2009-07-15 02:43:27 as
	Categorising Modality in Biomedical Texts [My Copy] In LREC 2008 (2008) by Paul Thompson, Giulia Venturi, John Mcnaught, Simonetta Montemagni, Sophia Ananiadou posted to biomedical hedging modality by henk-cul to the group dbmi-nlp on 2009-07-15 02:41:45 as

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