Group: dbmi-nlp - with tag annotation [31 articles] Export

Recent papers posted by members of the dbmi-nlp group with tag annotation

	BioDEAL: community generation of biological annotations. [My Copy] BMC medical informatics and decision making, Vol. 9 Suppl 1 (2009) by Paul Breimyer, Nathan Green, Vinay Kumar, Nagiza F. Samatova posted to semi-automation semantic-annotation nlp curation biology annotation by henk-cul to the group dbmi-nlp on 2009-12-03 14:11:58 as
	Construction of an annotated corpus to support biomedical information extraction [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 October 2009), 349. by Paul Thompson, Syed Iqbal, John McNaught, Sophia Ananiadou posted to syntax semantics semantic-roles information-extraction biomedical annotation by henk-cul to the group dbmi-nlp on 2009-10-28 18:23:48 as along with 3 people and 2 groups kshameer cisevol Effie BergmanLab NaCTeM
	Introduction to Linguistic Annotation and Text Analytics [My Copy] (2009) by Graham Wilcock posted to xml uima stanford-tools opennlp gate annotation by henk-cul to the group dbmi-nlp on 2009-10-16 19:13:02 as
	Developing a manually annotated clinical document corpus to identify phenotypic information for inflammatory bowel disease. [My Copy] BMC bioinformatics, Vol. 10 Suppl 9 (2009) by Brett R. South, Shuying Shen, Makoto Jones, et al.Jennifer Garvin, Matthew H. Samore, Wendy W. Chapman, Adi V. Gundlapalli posted to reference-standard annotation by henk-cul to the group dbmi-nlp on 2009-10-01 15:56:18 as
	Manual annotation of protein interactions. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 563 (2009), pp. 75-95. by S. Bureeva, S. Zvereva, V. Romanov, T. Serebryiskaya posted to annotation biomedical curation protein-interactions by henk-cul to the group dbmi-nlp on 2009-07-23 14:52:06 as along with 1 person kshameer
	Estimating Annotation Cost for Active Learning in a Multi-Annotator Environment [My Copy] In Proceedings of the NAACL HLT 2009 Workshop on Active Learning for Natural Language Processing (June 2009), pp. 18-26. by Shilpa Arora, Eric Nyberg, Carolyn P. Rosé posted to active-learning annotation by henk-cul to the group dbmi-nlp on 2009-07-10 14:52:14 as
	A reliability study for evaluating information extraction from radiology reports. [My Copy] Journal of the American Medical Informatics Association : JAMIA, Vol. 6, No. 2. (r 1999), pp. 143-150. by G. Hripcsak, G. J. Kuperman, C. Friedman, D. F. Heitjan posted to annotation experts generalizability information-extraction reference-standards reliability by henk-cul to the group dbmi-nlp on 2009-06-23 21:24:04 as along with 1 person brendano
	Incorporating GENETAG-style annotation to GENIA corpus [My Copy] In Proceedings of the BioNLP 2009 Workshop (June 2009), pp. 106-107. by Tomoko Ohta, Jin D. Kim, Sampo Pyysalo, Yue Wang, Jun'ichi Tsujii posted to annotation genetag genia by henk-cul to the group dbmi-nlp on 2009-06-18 16:46:59 as
	Automatic annotation of context and speech acts for dialogue corpora [My Copy] Natural Language Engineering, Vol. 15, No. 03. (2009), pp. 315-353. by Kallirroi Georgila, Oliver Lemon, James Henderson, Johanna D. Moore posted to annotation dialogue speech speech-acts by henk-cul to the group dbmi-nlp on 2009-06-08 15:00:22 as
	Annotating Expressions of Opinions and Emotions in Language [My Copy] Language Resources and Evaluation, Vol. 1, No. 2. (2005), pp. 0-0. by Janyce Wiebe, Theresa Wilson, Claire Cardie posted to annotation sentiment-analysis by henk-cul to the group dbmi-nlp on 2009-06-01 15:03:01 as along with 1 person zador
	Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition [My Copy] In LREC (2008) by Philip Ogren, Guergana Savova, Christopher Chute posted to annotation clinical named-entities snomed-ct by henk-cul to the group dbmi-nlp on 2009-05-01 14:57:33 as
	A System for Ontology-Based Annotation of Biomedical Data [My Copy] Data Integration in the Life Sciences (2008), pp. 144-152. by Clement Jonquet, Mark Musen, Nigam Shah posted to annotation biomedical ontologies by henk-cul to the group dbmi-nlp on 2009-04-29 15:26:33 as along with 1 person irenas
	An Approach to Text Corpus Construction which Cuts Annotation Costs and Maintains Reusability of Annotated Data [My Copy] In Proceedings of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL) (June 2007), pp. 486-495. by Katrin Tomanek, Joachim Wermter, Udo Hahn posted to active-learning annotation by henk-cul to the group dbmi-nlp on 2009-04-24 15:43:57 as
	Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection [My Copy] In Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (June 2008), pp. 30-37. by Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou posted to active-learning annotation named-entities by henk-cul to the group dbmi-nlp on 2009-04-24 15:40:06 as
	On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA [My Copy] In Biological, translational, and clinical language processing (June 2007), pp. 25-32. by Sampo Pyysalo, Filip Ginter, Veronika Laippala, Katri Haverinen, Juho Heimonen, Tapio Salakoski posted to annotation parsing by henk-cul to the group dbmi-nlp on 2009-04-24 15:37:02 as
	Creating reference datasets for systems biology applications using text mining. [My Copy] Annals of the New York Academy of Sciences, Vol. 1158, No. 1. (March 2009), pp. 14-28. by M. Krallinger, A. M. Rojas, A. Valencia posted to annotation biomedical knowledge-base text-mining by henk-cul to the group dbmi-nlp on 2009-04-15 14:55:14 as along with 3 people lmichan liblab zimbo1
	Corpus Design for Biomedical Natural Language Processing [My Copy] In Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics (June 2005), pp. 38-45. by Bretonnel K. Cohen, Lynne Fox, Philip V. Ogren, Lawrence Hunter posted to annotation biomedical by henk-cul to the group dbmi-nlp on 2009-03-07 00:41:31 as
	Definitional and human constraints on structural annotation of English [My Copy] Journal of Natural Language Engineering, Vol. 14, No. 4. (October 2008), pp. 471-494. by Geoffrey Sampson, Anna Babarczy posted to agreement annotation statistics by henk-cul to the group dbmi-nlp on 2009-03-03 15:03:50 as
	Building a semantically annotated corpus of clinical texts [My Copy] Journal of Biomedical Informatics (23 January 2009) by A. Roberts, R. Gaizauskas, M. Hepple, et al.G. Demetriou, Y. Guo, I. Roberts, A. Setzer posted to annotation corpus ie nlp by hpiwowar to the group dbmi-nlp on 2009-01-25 23:20:41 as along with 3 people mikel_egana dullhunk henk-cul
	Chocolate bar as an incentive did not increase response rate among physiotherapists: a randomised controlled trial [My Copy] BMC Research Notes, Vol. 1, No. 1. (2008) by Gro Jamtvedt, Sarah Rosenbaum, Kristin Dahm, Signe Flottorp posted to all annotation chocolate evaluation by hpiwowar to the group dbmi-nlp on 2008-09-24 22:02:57 as
	TimeML: Robust Specification of Event and Temporal Expression in Text [My Copy] IWCS-5, Fifth International Workshop on Computational Semantics. (2003) by J. Pustejovsky, J. Castano, R. Ingria, et al.R. Sauri, R. Gauzauskas, A. Setzer, G. Katz posted to annotation temporal by wchapman to the group dbmi-nlp on 2008-09-18 15:45:32 as
	Assigning time-stamps to event-clauses [My Copy] (2001) by Elena Filatova, Eduard Hovy posted to annotation temporality by Belle1 to the group dbmi-nlp on 2008-09-06 01:25:17 as
	Shallow parsing using noisy and non-stationary training material [My Copy] J. Mach. Learn. Res., Vol. 2 (2002), pp. 695-719. by Miles Osborne posted to all annotation evaluation machine-learning nlp by hpiwowar to the group dbmi-nlp on 2008-08-05 17:48:27 as
	Active Learning and the Total Cost of Annotation [My Copy] posted to active-learning all annotation evaluation nlp by hpiwowar to the group dbmi-nlp on 2008-08-05 17:39:30 as
	Active Annotation [My Copy] In Proceedings of ATEM in EACL06 (2006) by Andreas Vlachos posted to active-learning all annotation machine-learning nlp semi-supervised by hpiwowar to the group dbmi-nlp on 2008-07-31 15:39:17 as along with 2 people vlachmore henk-cul
	Evaluation of Coreferences and Coreference Resolution Systems [My Copy] (1998) by B. Amit posted to annotation coreference by wchapman to the group dbmi-nlp on 2008-04-14 19:56:36 as
	The CLEF Corpus: Semantic Annotation of Clinical Text [My Copy] In {American Medical Informatics Association 2007 Proceedings. Biomedical and Health Informatics: From Foundations to Applications to Policy} (November 2007), pp. 625-629. by A. Roberts, R. Gaizauskas, M. Hepple, et al.N. Davis, G. Demetriou, Y. Guo, J. Kola, I. Roberts, A. Setzer, A. Tapuria, B. Wheeldin edited by J. M. Teich, J. Suermondt, G. Hripcsak posted to annotation medical nlp by henk-cul to the group dbmi-nlp on 2008-03-10 15:37:50 as
	Annotation of anaphoric relations in biomedical full-text articles using a domain-relevant scheme [My Copy] Proceedings of DAARC (2007), pp. 19-24. by C. Gasperin, N. Karamanis, R. Seal posted to annotation coreference by wchapman to the group dbmi-nlp on 2008-02-18 16:45:57 as
	New directions in biomedical text annotation: definitions, guidelines and corpus construction [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (25 July 2006), 356. by W. John Wilbur, Andrey Rzhetsky, Hagit Shatkay posted to annotation literature by wchapman to the group dbmi-nlp on 2008-02-06 04:24:12 as along with 8 people and 1 group artaban421 lmichan liblab henk-cul fisherp helliontroy jacky957 balex biomedical-nlp
	Corpus annotation for mining biomedical events from literature [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 10. by Jin D. Kim, Tomoko Ohta, Jun'ichi Tsujii posted to annotation literature nlp by wchapman to the group dbmi-nlp on 2008-01-15 19:31:35 as along with 15 people and 1 group satre kekeeo arafalov Cluster guhjy yas dullhunk bhaddow sobolevnrm gmonce vlachmore mircea henk-cul gilesc aliekens baker-group
	Evaluation of training with an annotation schema for manual annotation of clinical conditions from emergency department reports. [My Copy] Int J Med Inform (19 February 2007) by Wendy W W. Chapman, John N N. Dowling, George Hripcsak posted to annotation chapmanww clinicalconditions training by hpiwowar to the group dbmi-nlp on 2007-11-05 14:31:05 as

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genome	181
bioinformatics	109
database	104
video	99
software	96
ontology	87
image	82
evolution	80
genomics	80
semantic	72
tagging	66
review	64
tools	64
microarray	55
web	52
transposon	51
protein	50
gene	49
collaboration	48
www	39
analysis	37
go	37
metagenomics	36
social	36
generals	32
social-navigation	31
nlp	29
sequence	29
vision	29
function	28
structure	28
hypertext	26
proteomics	26
algorithm	25
multimedia	25
prediction	25
tool	25
retrieval	24
search	24
classification	23
cscw	23
functional	23
corpus	22
clustering	21
electronic-textbook	21
curation	20
digital-library	20
functional-genomics	20
proteome	20
biomedical	19
expression	19
network	18
ppi	18
semantics	18
affymetrix	17
alignment	17
bacteria	17
das	17
integration	17
pipeline	17
rna	17
text-mining	17
wiki	17
data	16
methods	16
sequencing	16
tag	16
affy	15
b2gpaper2	15
drosophila	15
pimprj	15
visualization	15
bookmarking	14
collaborative	14
comparative	14
eece519	14
fungi	14
gene-expression	14
pathway	14
rate5	14
data_integration	13
est	13
folksonomy	13
human	13
learning	13
service	13
454	12
binding	12
context	12
hypermedia	12
informaion-retrieval	12
ir	12
metadata	12
semanticweb	12
automatic	11
classic	11
proj_assembly	11
semantic-web	11
snp	11
text	11

Group: dbmi-nlp - with tag annotation [31 articles] Export

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